ID: uc002zzi.1_intron_20_0_chr22_24480739_f
GENE: CABIN1(21)
chr22:24480689-24481008+


(1)
B-CELL 		(1)
BRAIN 		(7)
CELL-LINE 		(27)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
CCCTTAGCCTGGACAAAGTCTCTGCCTACATTGAGGGAACTTCAACTGAGGTGGGCCCACAACCTTGAGGACGTGGGGGACAGGGCTGGGTCACACTCTTCCGCTCTGCCACTGCTGTATATGCTCCTTTGCTTCTTTTTCTGCTCTGTACCAGACTGAGGGGCAGGAGAGGCTGGAGAGTCTGTCCTGTGACTAAACAGTCCTGGGTTTACTGGTCACATCTGAGTCCTTGACTCCACCTCCCCTCATACTTTTCCTCTCACCTGCCAGGTACCCTGCCTCCCAGAGGGGGCTGACCCCTCCCCTCCAGTGGTGAACGA
........................................................................................((.((.(((((((.(((..((....))........((((..(((..(((..((((........))))..)))..))))))).))).))))))).)).)).....................................................................................................................................
.......................................................................................88.................................................................................................187...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM532879(GSM532879)
G659N. (cervix)		GSM532873(GSM532873)
G699N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		SRR040032(GSM532917)
G603N. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		GSM532882(GSM532882)
G696T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR040017(GSM532902)
G645T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
............................................................................................ACACTCTTCCGCTCTAAA..................................................................................................................................................................................................................1820.000.00-7.006.00--2.00-1.00----2.00-----1.00-------------1.00------------------
............................................................................................ACACTCTTCCGCTCTCCC..................................................................................................................................................................................................................1815.000.00---5.00--3.00-3.00-1.00-------------1.00-----------1.00--1.00-----------
............................................................................................ACACTCTTCCGCTCTGGG..................................................................................................................................................................................................................189.000.00----3.00----1.00-3.00-2.00-------------------------------------
............................................................................................ACACTCTTCCGCTCTTTT..................................................................................................................................................................................................................187.000.00--------------2.00-------1.00---1.00--1.00---1.00------1.00----------
............................................................................................ACACTCTTCCGCTCTACA..................................................................................................................................................................................................................186.000.00-3.002.00--1.00---------------------------------------------
.................................AGGGAACTTCAACTGAG..............................................................................................................................................................................................................................................................................1723.503.50----------------1.00--------------------------0.500.50-0.50-0.500.50-
............................................................................................ACACTCTTCCGCTCTCAA..................................................................................................................................................................................................................182.000.00-1.00---1.00---------------------------------------------
............................................................................................ACACTCTTCCGCTCTCTG..................................................................................................................................................................................................................182.000.00-------------------------------1.00----------1.00--------
............................................................................................ACACTCTTCCGCTCTACC..................................................................................................................................................................................................................182.000.00---1.00------1.00----------------------------------------
............................................................................................ACACTCTTCCGCTCTAAC..................................................................................................................................................................................................................182.000.00-1.001.00------------------------------------------------
.............................................................................................CACTCTTCCGCTCTGTTA.................................................................................................................................................................................................................181.000.00--------------------1.00------------------------------
...................................................................................................................................................................CAGGAGAGGCTGGAGAACAG.........................................................................................................................................201.000.00---------------------1.00-----------------------------
.............................ATTGAGGGAACTTCAACTGAGGT............................................................................................................................................................................................................................................................................2311.001.00--------------------------------------1.00------------
............................................................................................ACACTCTTCCGCTCTCCA..................................................................................................................................................................................................................181.000.00-------1.00-------------------------------------------
.....................CTGCCTACATTGAGGGAACTTCAACTGAG..............................................................................................................................................................................................................................................................................2911.001.00-----------------------------------1.00---------------
............................................................................................ACACTCTTCCGCTCTTCC..................................................................................................................................................................................................................181.000.00------1.00--------------------------------------------
............................................................................................ACACTCTTCCGCTCTCTA..................................................................................................................................................................................................................181.000.00------------1.00--------------------------------------
............................................................................................ACACTCTTCCGCTCTGCT..................................................................................................................................................................................................................181.000.00---------1.00-----------------------------------------
............................................................................................................................TCCTTTGCTTCTTTTATCC.................................................................................................................................................................................191.000.00----------------------------1.00----------------------
....................TCTGCCTACATTGAGGGAACTTC.....................................................................................................................................................................................................................................................................................2311.001.00---------------1.00-----------------------------------
............................................................................................ACACTCTTCCGCTCTATA..................................................................................................................................................................................................................181.000.00-1.00-------------------------------------------------
............................................................................................ACACTCTTCCGCTCTTAA..................................................................................................................................................................................................................181.000.00-------1.00-------------------------------------------
............................................................................................ACACTCTTCCGCTCTGGC..................................................................................................................................................................................................................181.000.00----1.00----------------------------------------------
............................................................................................ACACTCTTCCGCTCTGGA..................................................................................................................................................................................................................181.000.00-----------------------1.00---------------------------
............................................................................................ACACTCTTCCGCTCTCAC..................................................................................................................................................................................................................181.000.00----------1.00----------------------------------------
............................................................................................ACACTCTTCCGCTCTAAG..................................................................................................................................................................................................................181.000.00-1.00-------------------------------------------------
............................................................................................ACACTCTTCCGCTCTTAT..................................................................................................................................................................................................................181.000.00---------1.00-----------------------------------------
....................TCTGCCTACATTGAGGGAA.........................................................................................................................................................................................................................................................................................1911.001.00---------------1.00-----------------------------------
............ACAAAGTCTCTGCCTACATTGAGG............................................................................................................................................................................................................................................................................................2411.001.00-------------------------1.00-------------------------
.............................................................................................................................................................................TGGAGAGTCTGTCCTGTGAC...............................................................................................................................2011.001.00---------------------------1.00-----------------------
.................GTCTCTGCCTACATTG...............................................................................................................................................................................................................................................................................................1640.500.50---------------------------------------------0.50-----
..................................GGGAACTTCAACTGAG..............................................................................................................................................................................................................................................................................1650.400.40----------------0.20---------------------------------0.20

Antisense strand
CCCTTAGCCTGGACAAAGTCTCTGCCTACATTGAGGGAACTTCAACTGAGGTGGGCCCACAACCTTGAGGACGTGGGGGACAGGGCTGGGTCACACTCTTCCGCTCTGCCACTGCTGTATATGCTCCTTTGCTTCTTTTTCTGCTCTGTACCAGACTGAGGGGCAGGAGAGGCTGGAGAGTCTGTCCTGTGACTAAACAGTCCTGGGTTTACTGGTCACATCTGAGTCCTTGACTCCACCTCCCCTCATACTTTTCCTCTCACCTGCCAGGTACCCTGCCTCCCAGAGGGGGCTGACCCCTCCCCTCCAGTGGTGAACGA
........................................................................................((.((.(((((((.(((..((....))........((((..(((..(((..((((........))))..)))..))))))).))).))))))).)).)).....................................................................................................................................
.......................................................................................88.................................................................................................187...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM532879(GSM532879)
G659N. (cervix)		GSM532873(GSM532873)
G699N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		SRR040032(GSM532917)
G603N. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		GSM532882(GSM532882)
G696T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR040017(GSM532902)
G645T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...................................................................................................................................CTTCTTTTTCTGCTCTGTAGCGA...................................................................................................................................................................... 235.000.005.00--------------------------------------------------
...................................................................................................................................CTTCTTTTTCTGCTCTGCGA......................................................................................................................................................................... 204.000.004.00--------------------------------------------------
...................................................................................................................................CTTCTTTTTCTGCTCTGGCGA........................................................................................................................................................................ 213.000.003.00--------------------------------------------------
.................................................................................................................................................................................................................................................................TCTCACCTGCCAGGTATACC........................................... 202.000.00-------------------1.00---------------------1.00---------
...................................................................................................................................CTTCTTTTTCTGCTCTGTGGGA....................................................................................................................................................................... 221.000.001.00--------------------------------------------------
..........................................................................................................................GCTCCTTTGCTTCTTTTTGAA................................................................................................................................................................................. 211.000.00------------------------------1.00--------------------
................................................................................................................................................................................................................................................................CTCTCACCTGCCAGGCTG.............................................. 181.000.00-------------------------------------1.00-------------
................................................................................................TCTTCCGCTCTGCCACCCT............................................................................................................................................................................................................. 191.000.00-----------------1.00---------------------------------
....................................................................................................................................TTCTTTTTCTGCTCTGTAA......................................................................................................................................................................... 191.000.001.00--------------------------------------------------
....................................................................................................................................TTCTTTTTCTGCTCTGCCG......................................................................................................................................................................... 191.000.001.00--------------------------------------------------
.....................................................................................................................................................................................................................................TTGACTCCACCTCCCCTAGGT...................................................................... 211.000.00----------------------------------1.00----------------
.....................................................................................................................................TCTTTTTCTGCTCTGGCCG........................................................................................................................................................................ 191.000.001.00--------------------------------------------------
..................................................................................................................................GCTTCTTTTTCTGCTCTGA........................................................................................................................................................................... 191.000.001.00--------------------------------------------------
....................................................................................................................................TTCTTTTTCTGCTCTGTCCGA....................................................................................................................................................................... 211.000.001.00--------------------------------------------------
....................................................................................................................................TTCTTTTTCTGCTCTGTACGA....................................................................................................................................................................... 211.000.001.00--------------------------------------------------
...........................................................................................................................................................................CAGGACAGACTCTCCAGC................................................................................................................................... 1820.500.50-----------------------------------------------0.50---