ID: uc002zxr.1_intron_0_0_chr22_24081551_r.5p
GENE: (1)
chr22:24082270-24082519-


(1)
AGO1.ip 		(5)
AGO2.ip 		(4)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(32)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(3)
HELA 		(4)
LIVER 		(3)
OTHER 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCTTTTTTCTTTTTTCTTTTTTTGAGATGGAGTCTTGCTTTGTCACCCAGGCTGTAGTGCAGTGGGGCGATCTCGGCTTACTGCAAGCTCTACCTCCCAGGTTCAGACCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACCGTGTTAGCCAAGATGGTATCTATCTCCTGAGCTCGTGATCCGCC
...........................................................................................................................................((......(((....)))...((.((((.(((.................)))...))))))....))............................................
...........................................................................................................................................140..................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040042(GSM532927)
G428N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..TTTTTTCTTTTTTCTTTTTTTAGGC...............................................................................................................................................................................................................................2513.000.009.004.00--------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCGGCC.................................................................................258.000.008.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTAG....................................................................................................................................................................................................................................217.000.00----2.00-2.00-2.00----1.00--------------------------------------------------------------
...........................................CACCCAGGCTGTAGTGCTCTG..........................................................................................................................................................................................216.000.00-------4.00---------1.00----------1.00-----------------------------------------------
........................................................................................................................................................................................TTAATAGAGACGGGGTTTAGA.............................................214.000.00-----------4.00----------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTTAAG................................................................................................................................................................................................................................254.000.00----1.00-1.00-1.00----1.00--------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCGGCA.................................................................................254.000.004.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCGGCG.................................................................................253.000.003.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCGGGC..................................................................................243.000.002.001.00--------------------------------------------------------------------------
..................................................................................................................................AAGTAGCTGGGACTACAGGCACCCGCCCCCC.........................................................................................312.000.001.00--------1.00------------------------------------------------------------------
..................................................................GCGATCTCGGCTTACTGCAAT...................................................................................................................................................................212.000.00--------------2.00-------------------------------------------------------------
..........................................TCACCCAGGCTGTAGTGCGGC...........................................................................................................................................................................................212.000.002.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTATA...................................................................................................................................................................................................................................222.000.00-2.00--------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGCTAATTCC..........................................................................322.000.002.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTCAG.................................................................................................................................................................................................................................242.000.00----1.00-1.00---------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCGGAC.................................................................................252.000.002.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGGG................................................................................261.000.00-1.00--------------------------------------------------------------------------
.........................................GTCACCCAGGCTGTAGTGCAGTGG.........................................................................................................................................................................................2401.001.00----------1.00-----------------------------------------------------------------
...........................................CACCCAGGCTGTAGTGCAGTG..........................................................................................................................................................................................2101.001.00---1.00------------------------------------------------------------------------
.........................................GTCACCCAGGCTGTAGTGCTCTG..........................................................................................................................................................................................231.000.00-------------------------------------1.00--------------------------------------
..........................................TCACCCAGGCTGTAGTGCAGCTGC........................................................................................................................................................................................241.000.00-1.00--------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGACCC...............................................................................271.000.001.00---------------------------------------------------------------------------
............................................................................................................................................GACTACAGGCACCCGCCACCACGCCCGGC.................................................................................2901.001.00-----1.00----------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTCTAG.................................................................................................................................................................................................................................241.000.00----1.00-----------------------------------------------------------------------
............................................ACCCAGGCTGTAGTGCAGTGG.........................................................................................................................................................................................2101.001.00-----1.00----------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGCTCACT............................................................................301.000.001.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTCTTG................................................................................................................................................................................................................................251.000.00--------1.00-------------------------------------------------------------------
............................................ACCCAGGCTGTAGTGCAGCCAT........................................................................................................................................................................................221.000.00-1.00--------------------------------------------------------------------------
................................................AGGCTGTAGTGCAGTGGGACC.....................................................................................................................................................................................211.000.00---------------1.00------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCGCCC.................................................................................251.000.001.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACCGGC....................................................................................221.000.00-1.00--------------------------------------------------------------------------
.....................................CTTTGTCACCCAGGCTGTAGTGCTCTG..........................................................................................................................................................................................271.000.00-------------------------------------------1.00--------------------------------
...........................TGGAGTCTTGCTTTGTCACCCAGGACGG...................................................................................................................................................................................................281.000.00-1.00--------------------------------------------------------------------------
..................................................................................................................................................AGGCACCCGCCACCACGCCCGGCCAGG.............................................................................271.000.001.00---------------------------------------------------------------------------
.................................................................GGCGATCTCGGCTTACTGCAGG...................................................................................................................................................................221.000.00--------------------------------------------------------------------1.00-------
.....................................................................................................................................................................................TTTTTAATAGAGACGGGGGTGC...............................................221.000.00---------------------------------------------------------------1.00------------
........................................TGTCACCCAGGCTGTAGTGCAGGCG.........................................................................................................................................................................................251.000.001.00---------------------------------------------------------------------------
...............................................................................................................................................TACAGGCACCCGCCACCACGCCCGGGC................................................................................271.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................TTTAATAGAGACGGGGTTTGTAT............................................231.000.00-----------1.00----------------------------------------------------------------
....TTTTCTTTTTTCTTTTTTTGAGGGGG............................................................................................................................................................................................................................261.000.001.00---------------------------------------------------------------------------
..........................................TCACCCAGGCTGTAGTGCAGGGCG........................................................................................................................................................................................241.000.001.00---------------------------------------------------------------------------
..........................................................GCAGTGGGGCGATCTCGG..............................................................................................................................................................................1801.001.00----------1.00-----------------------------------------------------------------
.................................................................................................................................CAAGTAGCTGGGACTACCG......................................................................................................191.000.00-------------------------------------------------1.00--------------------------
...............................................................................................................................................TACAGGCACCCGCCACCACGCCGGCC.................................................................................261.000.001.00---------------------------------------------------------------------------
..........TTTTTCTTTTTTTGAGATGGAGACTG......................................................................................................................................................................................................................261.000.00-1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................ATAGAGACGGGGTTTCACCGTGCTC......................................251.000.001.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTGGAG................................................................................................................................................................................................................................251.000.001.00---------------------------------------------------------------------------
............................................ACCCAGGCTGTAGTGCTCTG..........................................................................................................................................................................................201.000.00------------------------------------------------------1.00---------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGCTAATCCA..........................................................................321.000.00-1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................ATCTCCTGAGCTCGTGATCCC..211.000.00-----------------------------------------1.00----------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAACTCT..........................................................................251.000.00---------1.00------------------------------------------------------------------
...........................................CACCCAGGCTGTAGTGCAGGTG.........................................................................................................................................................................................2201.001.00------------------------------------1.00---------------------------------------
.........................................GTCACCCAGGCTGTAGTG...............................................................................................................................................................................................1801.001.00--1.00-------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCAAGGA.....................................................................................211.000.00------------------------------------------------------------------1.00---------
..............TCTTTTTTTGAGATGGAGTCCCC.....................................................................................................................................................................................................................231.000.00-1.00--------------------------------------------------------------------------
.................................................GGCTGTAGTGCAGTGTTT.......................................................................................................................................................................................181.000.00----------------------1.00-----------------------------------------------------
...............................................................................................................................................TACAGGCACCCGCCACCACGCCCGGCTGATC............................................................................311.000.001.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTCAG.....................................................................................................................................................................................................................................201.000.00------1.00---------------------------------------------------------------------
..........................................TCACCCAGGCTGTAGTGAAT............................................................................................................................................................................................201.000.00-----------------------------------1.00----------------------------------------
.CTTTTTTCTTTTTTCTTTTTCTGG.................................................................................................................................................................................................................................241.000.001.00---------------------------------------------------------------------------
..................................................................................................................................................AGGCACCCGCCACCACGCCCGGCTAATTCTTC........................................................................321.000.00-1.00--------------------------------------------------------------------------
...........................................CACCCAGGCTGTAGTGCAGTGG.........................................................................................................................................................................................2201.001.00--------------1.00-------------------------------------------------------------
...........................................CACCCAGGCTGTAGTGCAG............................................................................................................................................................................................1901.001.00--------------------------------------------------------------1.00-------------
..............................AGTCTTGCTTTGTCACCCATGAA.....................................................................................................................................................................................................231.000.00--------------------------------------------------------1.00-------------------
.CTTTTTTCTTTTTTCTTTTTTTAAAA...............................................................................................................................................................................................................................261.000.00------1.00---------------------------------------------------------------------
.......................................................................................................................................................................................TTTAATAGAGACGGGGTTTTG..............................................211.000.00--1.00-------------------------------------------------------------------------
.......TCTTTTTTCTTTTTTTGAGATGGAC..........................................................................................................................................................................................................................251.000.001.00---------------------------------------------------------------------------
...............................................................................................................................................................................................AGACGGGGTTTCACCGTGTAACC....................................231.000.001.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGCTCT..............................................................................281.000.00-1.00--------------------------------------------------------------------------
.........................................GTCACCCAGGCTGTAGTGCAGAGT.........................................................................................................................................................................................241.000.00-------------------------1.00--------------------------------------------------
...............................................CAGGCTGTAGTGCAGTGGG........................................................................................................................................................................................1901.001.00--1.00-------------------------------------------------------------------------
......................................................................................................TCAGACCATTCTCCTGCCTCAGCCCC..........................................................................................................................261.000.00-1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................AGAGACGGGGTTTCACCGGGTC.......................................221.000.001.00---------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGGCCC...............................................................................271.000.001.00---------------------------------------------------------------------------
............TTTCTTTTTTTGAGATGGAGTCTTGGTG..................................................................................................................................................................................................................281.000.00-1.00--------------------------------------------------------------------------
................................................................................................................................................ACAGGCACCCGCCACCACGCCCGCCA................................................................................261.000.001.00---------------------------------------------------------------------------
................................................AGGCTGTAGTGCAGTTACG.......................................................................................................................................................................................191.000.00-------------------1.00--------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATTACTG........................................................................271.000.00---------1.00------------------------------------------------------------------
........................................TGTCACCCAGGCTGTAGTGCTCTG..........................................................................................................................................................................................241.000.00----------------1.00-----------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATTTTTCCG......................................................................291.000.00---------1.00------------------------------------------------------------------
.....................................................................................................................................TAGCTGGGACTACAGGCACCCGCCACCACCTGG....................................................................................331.000.001.00---------------------------------------------------------------------------
.............................................CCCAGGCTGTAGTGCAGTGGGTTT.....................................................................................................................................................................................241.000.00------------1.00---------------------------------------------------------------
.....................................................................................................................................TAGCTGGGACTACAGGCACCCCAGC............................................................................................251.000.00-1.00--------------------------------------------------------------------------
.....................................................................................................................................................CACCCGCCACCACGCCCGGCTAATTACTG........................................................................291.000.00---------1.00------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTCCG.................................................................................................................................................................................................................................241.000.00----1.00-----------------------------------------------------------------------
...............................................................................................................................................TACAGGCACCCGCCACCACGCCGACA.................................................................................261.000.001.00---------------------------------------------------------------------------
.....................................................................................................................................................CACCCGCCACCACGCCCGGCTAATTATCG........................................................................291.000.00---------1.00------------------------------------------------------------------
..........................................................................................................ACCATTCTCCTGCCTCAGCCCTGG........................................................................................................................241.000.001.00---------------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTAATAGAGACGGGGTTTAAAA............................................251.000.00----------------------------------------------------------1.00-----------------
...............................................CAGGCTGTAGTGCAGTGGGATA.....................................................................................................................................................................................2201.001.00---------------1.00------------------------------------------------------------
...............................................CAGGCTGTAGTGCAGTGGGTT......................................................................................................................................................................................2101.001.00---------------1.00------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTCTAG................................................................................................................................................................................................................................251.000.00--------1.00-------------------------------------------------------------------
.....................................................................................................................................TAGCTGGGACTACAGGCACCCGCCGTC..........................................................................................271.000.001.00---------------------------------------------------------------------------
.....TTTCTTTTTTCTTTTTTTGGGTT..............................................................................................................................................................................................................................231.000.001.00---------------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTTTGGG.................................................................................................................................................................................................................................241.000.001.00---------------------------------------------------------------------------
.........................................GTCACCCAGGCTGTAGTGCAGTTGCC.......................................................................................................................................................................................261.000.00-------------------------------------------------------------1.00--------------
...............................................CAGGCTGTAGTGCAGTGGGCCAA....................................................................................................................................................................................2301.001.00------------1.00---------------------------------------------------------------
.....................................................................................................................................................CACCCGCCACCACGCCCGGCTAATTTCTCG.......................................................................301.000.001.00---------------------------------------------------------------------------
..........................................................................................................................AGCCTCCCAAGTAGCTGGGACTACAGGCAGGGG...............................................................................................331.000.001.00---------------------------------------------------------------------------
...........................................................................................................................................................................................ATAGAGACGGGGTTTCATTT...........................................201.000.00------------------------------------------------------------1.00---------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCGTTC.............................................................................221.000.00----------------------------------------------------------------1.00-----------
................................................................................................................................................................ACGCCCGGCTAATTTTTTGTATTTCCGG..............................................................281.000.001.00---------------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTAATAGAGACGGGGAA.................................................201.000.00-----------1.00----------------------------------------------------------------
..........................ATGGAGTCTTGCTTTGTGTCC...........................................................................................................................................................................................................211.000.001.00---------------------------------------------------------------------------
.............................................CCCAGGCTGTAGTGCAGTGGGGCGAA...................................................................................................................................................................................261.000.00-----------------------------1.00----------------------------------------------
..........................................TCACCCAGGCTGTAGTGCAGCGAG........................................................................................................................................................................................241.000.00-1.00--------------------------------------------------------------------------
.............................GAGTCTTGCTTTGTCACCCATC.......................................................................................................................................................................................................221.000.00----------------------------------1.00-----------------------------------------
................................................AGGCTGTAGTGCAGTGGGACAA....................................................................................................................................................................................221.000.00------------------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................CTCCTGAGCTCGTGATCCGCCAA231.000.00---------------------1.00------------------------------------------------------
............................................ACCCAGGCTGTAGTGCAGTGGGAGA.....................................................................................................................................................................................251.000.00-----------------------1.00----------------------------------------------------
..TTTTTTCTTTTTTCTTTTTTTGCTTG..............................................................................................................................................................................................................................261.000.00---------1.00------------------------------------------------------------------
.CTTTTTTCTTTTTTCTTTTAAT...................................................................................................................................................................................................................................221.000.00------1.00---------------------------------------------------------------------
.........................................GTCACCCAGGCTGTAGTGCAGTGGGGCG.....................................................................................................................................................................................2820.500.50--------------------0.50-------------------------------------------------------
...............................................CAGGCTGTAGTGCAGTGGGGCG.....................................................................................................................................................................................2280.250.25-----------------------------------------------------------------------0.25----
..............................................................................................TCCCAGGTTCAGACCATTCTCCTGCCTCA...............................................................................................................................2960.170.17-------0.17--------------------------------------------------------------------
................................................AGGCTGTAGTGCAGTGGGGCGATCTC................................................................................................................................................................................2660.170.17----------------------------------------------------------------------0.17-----
......................................................TAGTGCAGTGGGGCGATCTCG...............................................................................................................................................................................2170.140.14------------------------------------------------------------------------0.14---
...............................................CAGGCTGTAGTGCAGTGGGGCGG....................................................................................................................................................................................2380.120.25-------------------------------------------------------------------------0.12--
................................................AGGCTGTAGTGCAGTGGGGCGA....................................................................................................................................................................................2290.110.11----------------------------------------------------------------------0.11-----
................................................AGGCTGTAGTGCAGTGGGGCGAT...................................................................................................................................................................................2390.110.11--------------------------------------------------------------------------0.11-
............................................ACCCAGGCTGTAGTGCAGTGGGG.......................................................................................................................................................................................2390.110.11------------0.11---------------------------------------------------------------
................................................AGGCTGTAGTGCAGTGGGGCG.....................................................................................................................................................................................2190.110.11---------------------------------------------------------------------------0.11

Antisense strand
TCTTTTTTCTTTTTTCTTTTTTTGAGATGGAGTCTTGCTTTGTCACCCAGGCTGTAGTGCAGTGGGGCGATCTCGGCTTACTGCAAGCTCTACCTCCCAGGTTCAGACCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACCGTGTTAGCCAAGATGGTATCTATCTCCTGAGCTCGTGATCCGCC
...........................................................................................................................................((......(((....)))...((.((((.(((.................)))...))))))....))............................................
...........................................................................................................................................140..................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040042(GSM532927)
G428N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.......................................................................................................................................................CCCGCCACCACGCCCGGG................................................................................. 1830.000.00--13.006.00-9.00----2.00-----------------------------------------------------------------
....................................................................................AAGCTCTACCTCCCATG..................................................................................................................................................... 174.000.00-------3.00------------1.00-------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATTGGTC........................................................................ 273.000.001.002.00--------------------------------------------------------------------------
.....................................................................................AGCTCTACCTCCCAGGTTCACTG.............................................................................................................................................. 233.000.00------------------2.00------------1.00--------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGGGA............................................................................... 202.000.00---------------------------1.00-------------------1.00----------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGGAA............................................................................... 202.000.00------------------------1.00-----------------------1.00---------------------------
...........................................................................................................CCATTCTCCTGCCTCAGCCTCCCAGGCG................................................................................................................... 282.000.00-2.00--------------------------------------------------------------------------
...........................................................................................................................GGGTGCCTGTAGTCCCAGCTACTTGGGAGGC................................................................................................ 3102.002.00---2.00------------------------------------------------------------------------
.....................................................................................................AGGAGAATGGTCTGAA..................................................................................................................................... 1602.002.00--1.00-------------------------------------------------1.00-----------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGGTG............................................................................... 202.000.00-------------------1.00-------------------------1.00------------------------------
...........................................................................................................................................GGACTACAGGCACCCGTCTG........................................................................................... 202.000.00----------------1.00---------------------------1.00-------------------------------
...................................................................................................................CTGCCTCAGCCTCCCAAGTAGCTGGGACTCCGG...................................................................................................... 332.000.002.00---------------------------------------------------------------------------
...........................................................................................................CCATTCTCCTGCCTCAGCCTCCCAAGTGGCG................................................................................................................ 312.000.00-2.00--------------------------------------------------------------------------
......................................................................................................................................................GCCGGGCGTGGTGGCGGGT................................................................................. 1901.001.00---1.00------------------------------------------------------------------------
....................................................................................................GTTCAGACCATTCTCCTGA................................................................................................................................... 191.000.00------------1.00---------------------------------------------------------------
...................................................................................................................................................GGCACCCGCCACCACGCCCGGCTAGGC............................................................................ 271.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGGTA............................................................................... 201.000.00-----------------------------------------------------1.00----------------------
........................CCTGGGTGACAAAGCAAGACTCCATCT....................................................................................................................................................................................................... 2701.001.00-------------------------------------------------------1.00--------------------
...........................................................................................................................................................................................................ATCTTGGCTAACACGGT.............................. 1701.001.00----------1.00-----------------------------------------------------------------
...............................GTCTTGCTTTGTCACCCAGGCTGTCGT................................................................................................................................................................................................ 271.000.001.00---------------------------------------------------------------------------
............................GGAGTCTTGCTTTGTCACCCAGGCTGGC.................................................................................................................................................................................................. 281.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATGGTC......................................................................... 261.000.00-1.00--------------------------------------------------------------------------
.....................................................................................................................................................CACCCGCCACCACGCCCGGCGCA.............................................................................. 231.000.00----------------------------------------------1.00-----------------------------
.........................................................................................................................................GTGGTGGCGGGTGCCTGTAGTCCCA........................................................................................ 2501.001.00---------------------------------------------------1.00------------------------
............................................................................................................CATTCTCCTGCCTCAGCCTCCCAAGTAGTTGA.............................................................................................................. 321.000.00--------------------------------1.00-------------------------------------------
........................................................................................................................................................CCGCCACCACGCCCGGCCAT.............................................................................. 201.000.00---------------------------------------1.00------------------------------------
...........................................................................................................................GCCTCCCAAGTAGCTGGGACTACAGGCAGGC................................................................................................ 311.000.001.00---------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTGGT............................................................................. 221.000.00-1.00--------------------------------------------------------------------------
..............................................................................................................................................GGCGTGGTGGCGGGTGCCTGTAG..................................................................................... 2301.001.00---1.00------------------------------------------------------------------------
.....................................................................................................................................TAGCTGGGACTACAGGCACGAGC.............................................................................................. 231.000.00------------------------------------------1.00---------------------------------
............................................................................................................................GGGTGCCTGTAGTCCCAGCTACTTGGGAGG................................................................................................ 3001.001.00----------1.00-----------------------------------------------------------------
..............................................................................................................................GGCGGGTGCCTGTAGTCCCAGCTACTTGGGA............................................................................................. 3101.001.00--1.00-------------------------------------------------------------------------
....................................................................................................................................................................CCGGCTAATTTTTTGTATTTCGGC.............................................................. 241.000.00-1.00--------------------------------------------------------------------------
..........................................................................................................................................GGGACTACAGGCACCCCGAA............................................................................................ 201.000.00---------------------------------1.00------------------------------------------
.........................................................................................................................................TGGGACTACAGGCACCCGCCA............................................................................................ 211.000.00---------------------------------------------------------1.00------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATTTGAA........................................................................ 271.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATGAGC......................................................................... 261.000.00-1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................GGTGAAACCCCGTCTCTATT............................................ 2001.001.00---1.00------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATGATC......................................................................... 261.000.001.00---------------------------------------------------------------------------
.................................................................................TGCAAGCTCTACCTCCCC....................................................................................................................................................... 181.000.00--------------------------------------1.00-------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTAATTTTGTCT...................................................................... 291.000.00-1.00--------------------------------------------------------------------------
....................................................................................................GTTCAGACCATTCTCCTGTCTG................................................................................................................................ 221.000.00-----------------1.00----------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGGCTGTGG............................................................................ 231.000.00-1.00--------------------------------------------------------------------------
...........................................................................................................................................................CCACCACGCCCGGCTAATAAGT......................................................................... 221.000.00-1.00--------------------------------------------------------------------------
.......................................................................................TGAACCTGGGAGGTAGAG................................................................................................................................................. 1801.001.00---1.00------------------------------------------------------------------------
...........................................................................................................................................GGACTACAGGCACCCGCGGCT.......................................................................................... 211.000.00-------------------------------------------------------------------1.00--------
....................................................................................AAGCTCTACCTCCCACTG.................................................................................................................................................... 181.000.00-------1.00--------------------------------------------------------------------
..........................................................................................................................................................GCCACCACGCCCGGCTAATTTTTTGTCTG................................................................... 291.000.00-----------------------------------------------------------1.00----------------
...........................................................................................................CCATTCTCCTGCCTCAGCCTCCCAAGCGA.................................................................................................................. 291.000.001.00---------------------------------------------------------------------------
..................................................................................................................................................................................................CGGGGTTTCACCGTGTTAGCCAAGTTC............................. 271.000.00-1.00--------------------------------------------------------------------------
.....................TTGAGATGGAGTCTTGCCAAG................................................................................................................................................................................................................ 211.000.00-----------------------------------------------------------------1.00----------
..................................................................................................................................................AGGCACCCGCCACCACGCCCGGAA................................................................................ 241.000.00--------------------------------------------------1.00-------------------------
.......................................................................................................................................GCTGGGACTACAGGCACGCTC.............................................................................................. 211.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................CCCGCCACCACGCCCGG.................................................................................. 171.000.00-----1.00----------------------------------------------------------------------
.....................................................................................................................................................CACCCGCCACCACGCCCGGCTGT.............................................................................. 231.000.00--------------------------1.00-------------------------------------------------
.........................................................................TGGGAGGTAGAGCTTGCAGTAAGCCG....................................................................................................................................................... 2620.500.50---------------------------------------------------------------------0.50------
............................................................................................TGGTCTGAACCTGGGAGG............................................................................................................................................ 1860.170.17---------------------0.17------------------------------------------------------