ID: uc002ztn.2_intron_16_0_chr22_21349316_f.5p
GENE: (17)
chr22:21349266-21349515+


(3)
B-CELL 		(12)
BRAIN 		(13)
BREAST 		(22)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS

Sense strand
GAAGCAGCAGCCGCCCCCTCGCACTCCCTTGGACCAGCCAGTGGACATTGGTAGGGAGCCCCGTTCCCCTTCCCTGGGGGCTGGGAGGGATGGTGTTCATCTGCGGTAGGAGATTGGGAGCCATGGAGAGCACCTGCCAGGCCCTCGGGGTGGGGGTGGGTGCCATGGGACCCCAGAGTGCTCTCCTGGGTACAGGGAGGAAACAGATGAAGGCAGAAGCCCCCGACCCATGGGGCTTGCCACAGTGGGC
..................................................(((((((((.((((((((((.(((...)))..))).))))))).)))).)))))..................................................................................................................................................
..................................................51......................................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784TAX577746(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................TGCGGTAGGAGATTGTAT...................................................................................................................................1840.000.0010.002.00--2.001.00-----1.002.00--2.001.001.002.001.002.00-1.00-2.00--1.00---1.00-1.001.00----1.00----------------1.00-1.00---1.00-1.00-----1.00----
.....................................................................................................TGCGGTAGGAGATTGTA....................................................................................................................................1720.000.00--2.005.001.001.00-2.00-1.001.00------2.00-1.001.00--2.00--1.00------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTATA..................................................................................................................................1917.000.001.001.002.001.001.001.00--2.00--1.00---1.00---1.00--------2.00------------1.00-1.00---------------------1.00---------
.....................................................................................................TGCGGTAGGAGATTGGATAG.................................................................................................................................208.000.00-3.00------1.001.001.00----------1.00----------------1.00------------------------------------
.....................................................................................................TGCGGTAGGAGATTGAAT...................................................................................................................................187.000.006.00-----------------------------1.00--------------------------------------------
..........................................................................................................TAGGAGATTGGGAGCCATGGAGA.........................................................................................................................2315.005.00------5.00--------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGA....................................................................................................................................174.000.00--1.00-1.00--------2.00-------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGCA....................................................................................................................................174.000.00----2.00----1.00----------------1.00------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGCAT...................................................................................................................................184.000.001.00------1.00--------1.00---------------------------------1.00------------------------
.....................................................................................................TGCGGTAGGAGATTGTCTA..................................................................................................................................193.000.00-----1.00---1.00---1.00-------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTATC..................................................................................................................................193.000.00-1.00---1.00-----1.00---------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTC....................................................................................................................................172.000.00-------1.00----------------------1.00--------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGATA..................................................................................................................................192.000.00----------------1.00-------------------------------------------------1.00--------
.....................................................................................................TGCGGTAGGAGATTGTGT...................................................................................................................................182.000.00----------1.00------------------------------------------1.00---------------------
.....................................................................................................TGCGGTAGGAGATTGTAA...................................................................................................................................182.000.002.00--------------------------------------------------------------------------
.......CAGCCGCCCCCTCGCCCG.................................................................................................................................................................................................................................1812.001.00----------------------------------------------------1.00--------1.00-------------
.....................................................................................................TGCGGTAGGAGATTGGT....................................................................................................................................172.000.00--1.00--------1.00---------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTCT...................................................................................................................................182.000.00----------------------------------------1.00-------------------1.00--------------
..........................................................CCCCGTTCCCCTTCCTCC..............................................................................................................................................................................181.000.00------------------------------------------1.00--------------------------------
.......CAGCCGCCCCCTCGCCC..................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------------1.00---------------
.....................................................................................................TGCGGTAGGAGATTGTACC..................................................................................................................................191.000.00-----------------------------1.00---------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTATT..................................................................................................................................191.000.00-1.00-------------------------------------------------------------------------
.......CAGCCGCCCCCTCGC....................................................................................................................................................................................................................................1511.001.00--------------------------------------------1.00------------------------------
.....................................................................................................TGCGGTAGGAGATTGGAT...................................................................................................................................181.000.001.00--------------------------------------------------------------------------
......GCAGCCGCCCCCTCGCC...................................................................................................................................................................................................................................171.000.00----------1.00----------------------------------------------------------------
............................................................CCGTTCCCCTTCCCTTGCC...........................................................................................................................................................................191.000.00-------------------------------------1.00-------------------------------------
......................................................................................................................................................TGGGGGTGGGTGCCATGGGTGA..............................................................................221.000.00----------------------------------------------1.00----------------------------
.....................................................................................................TGCGGTAGGAGATTGGGTTGT................................................................................................................................211.000.00---------------------------1.00-----------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGAGAG.................................................................................................................................201.000.00--------1.00------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTCTC..................................................................................................................................191.000.00-----1.00---------------------------------------------------------------------
...........................................................................GGGGGCTGGGAGGGATGTACT..........................................................................................................................................................211.000.00--1.00------------------------------------------------------------------------
..............................................................................................................................................................................................TACAGGGAGGAAACACCA..........................................181.000.00------------------------------------1.00--------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTTTA..................................................................................................................................191.000.00--1.00------------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTAC...................................................................................................................................181.000.00-----------------------------------------------------------------------1.00---
.....................................................................................................................................................................................................................................ATGGGGCTTGCCACAGTGAGG211.000.00-------------------------1.00-------------------------------------------------
...........................................................................GGGGGCTGGGAGGGATTT.............................................................................................................................................................181.000.00---------------------------------------------------1.00-----------------------
.....................................................................................................TGCGGTAGGAGATTGCATC..................................................................................................................................191.000.00------------------------------------------------1.00--------------------------
......GCAGCCGCCCCCTCGCCC..................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00-----------------------------
.....................................................................................................TGCGGTAGGAGATTGGGTAGT................................................................................................................................211.000.00---1.00-----------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGATTG.................................................................................................................................201.000.00-1.00-------------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGTTCG.................................................................................................................................201.000.00----------------------1.00----------------------------------------------------
...............................................................................................................................................................................................ACAGGGAGGAAACAGGAGC........................................191.000.00-------------------------------------------------------1.00-------------------
............GCCCCCTCGCACTCCTTTT...........................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00-------------------------
.....................................................................................................TGCGGTAGGAGATTGAC....................................................................................................................................171.000.00------------------1.00--------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGAAA...................................................................................................................................181.000.001.00--------------------------------------------------------------------------
....CAGCAGCCGCCCCCTTG.....................................................................................................................................................................................................................................171.000.00-1.00-------------------------------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGGGCAG.................................................................................................................................201.000.00---------------------1.00-----------------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTTGA..................................................................................................................................191.000.00--------------------------------------------------------------------1.00------
.....................................................................................................TGCGGTAGGAGATTGAAGA..................................................................................................................................191.000.00-----------------------------1.00---------------------------------------------
.....................................................................................................TGCGGTAGGAGATTGTGTA..................................................................................................................................191.000.00------------1.00--------------------------------------------------------------
.........................................................................................................................................CAGGCCCTCGGGGTGG.................................................................................................1630.330.33-------------------------------------------------------------------------0.33-

Antisense strand
GAAGCAGCAGCCGCCCCCTCGCACTCCCTTGGACCAGCCAGTGGACATTGGTAGGGAGCCCCGTTCCCCTTCCCTGGGGGCTGGGAGGGATGGTGTTCATCTGCGGTAGGAGATTGGGAGCCATGGAGAGCACCTGCCAGGCCCTCGGGGTGGGGGTGGGTGCCATGGGACCCCAGAGTGCTCTCCTGGGTACAGGGAGGAAACAGATGAAGGCAGAAGCCCCCGACCCATGGGGCTTGCCACAGTGGGC
..................................................(((((((((.((((((((((.(((...)))..))).))))))).)))).)))))..................................................................................................................................................
..................................................51......................................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189782GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784TAX577746(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................CTCCTGGGTACAGGGACTCA................................................ 203.000.00--------------3.00------------------------------------------------------------
.......................................................................................................................................GCCAGGCCCTCGGGGTCGTG............................................................................................... 201.000.00-1.00-------------------------------------------------------------------------
.....................................................................................................................................................GTGGGGGTGGGTGCCGGGG.................................................................................. 191.000.00-------------------------------1.00-------------------------------------------
.........TCCAAGGGAGTGCGAGGGGGCGGC......................................................................................................................................................................................................................... 2411.001.00------------------------------------------------------1.00--------------------
.....................................................................................................................................................GTGGGGGTGGGTGCCGGGC.................................................................................. 191.000.00--------------------------------1.00------------------------------------------
...................................................................................................................................................................................GCTCTCCTGGGTACATGC..................................................... 181.000.00-------------------------1.00-------------------------------------------------
............................................................................................................................................................................................................................CCCCGACCCATGGGGTG............. 171.000.00---------------------------------------------------------------1.00-----------
.....................................................................................................................................................GTGGGGGTGGGTGCCGGGA.................................................................................. 191.000.00-----------------------------------------------1.00---------------------------
.....................................................................................................................................................GTGGGGGTGGGTGCCGG.................................................................................... 171.000.00---------------------------------------------------------1.00-----------------
.........................................................................................................................................................................................................................CACTGTGGCAAGCCCCATGGGTCGGGGGCT... 3011.001.00-------------------------------------------------------------------1.00-------
.....................................................................................................................................................GTGGGGGTGGGTGCCGGG................................................................................... 181.000.00-----------------------------------1.00---------------------------------------
......................................................................................GGGATGGTGTTCATCGGAA................................................................................................................................................. 191.000.00---------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................TGGGTCGGGGGCTTCT.................... 1630.670.67------------------------------------------------------------------------0.67--
.........GTGCGAGGGGGCGGC.................................................................................................................................................................................................................................. 1540.250.25--------------------------------------------------------------------------0.25