ID: uc002ztg.1_intron_2_0_chr22_21304216_f.3p
GENE: (3)
chr22:21307294-21307543+


(1)
AGO1.ip 		(1)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(3)
HELA 		(8)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTCCTTTACAGCTGTTTACAGACAAGGCAGGCCTGAGGCAGATGGCCACTGCTCTTGTGATGTTTGCTCAGAGGAATATGAACATTTTATTTTTGAAAAGGGATGATGTGGTTTTTTGCCAGGTGTTTATAATTAATCCTTTAATATTATGGTTATTAACCTCTTAAACATGAATGAATTCTTGATTGTTTTAACACAGTACCTAAGACTAATGCTTTCTGTGGACACCACTGAGCTCTGCCTCAACTC
...........................................................................................................................(((((.((((((((...((((...(((((.(((.........))).))))).))))...))))))))...)))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532886(GSM532886)
G850T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..............................................................................................................................TTTATAATTAATCCTTTAATATTATG..................................................................................................2617.007.00--3.00-------------3.00-------------1.00--------------------------------------
..............................................................................................................................................................................ATGAATTCTTGATTGTTTTAA.......................................................2116.006.00---------------3.00---3.00-------------------------------------------------
...............................................................................................................................TTATAATTAATCCTTTAATATTATG..................................................................................................2516.006.00--5.00----1.00-------------------------------------------------------------
...............................................................TTTGCTCAGAGGAATATGAACATTTC.................................................................................................................................................................264.000.00---------4.00-----------------------------------------------------------
.........................AGGCAGGCCTGAGGCAGATGGCCACTGCCCT..................................................................................................................................................................................................314.000.00-4.00-------------------------------------------------------------------
........................................................................................TATTTTTGAAAAGGGATGATGTGG..........................................................................................................................................2412.002.00----------------------------2.00----------------------------------------
..................................................................................................AAGGGATGATGTGGTTTTTTGCCAGGTGC...........................................................................................................................292.000.002.00--------------------------------------------------------------------
................................................................................................................................TATAATTAATCCTTTAATATTAT...................................................................................................2312.002.00----2.00----------------------------------------------------------------
..................................................................................................................................................................................ATTCTTGATTGTTTTAACACAG..................................................2212.002.00-------2.00-------------------------------------------------------------
.........................................................................................ATTTTTGAAAAGGGATGATGTGGTTTTTTGC..................................................................................................................................3112.002.00----------2.00----------------------------------------------------------
................................................................................................AAAAGGGATGATGTGGTT........................................................................................................................................1812.002.00-------------1.00----1.00--------------------------------------------------
..........................................ATGGCCACTGCTCTTGTGATGTTTGCTCAG..................................................................................................................................................................................3012.002.001.001.00-------------------------------------------------------------------
......................................................................................................................................................................................................AGTACCTAAGACTAATGCTTTCTGTG..........................2612.002.00------------2.00--------------------------------------------------------
.......................................CAGATGGCCACTGCTCTTGTGACG...........................................................................................................................................................................................2412.001.002.00--------------------------------------------------------------------
............................................................................................................................................................................................................TAAGACTAATGCTTTCTGTGGACACC....................2612.002.00--------------1.00------1.00-----------------------------------------------
.................TACAGACAAGGCAGGCCTGAGGTAAT...............................................................................................................................................................................................................262.000.00----------------------2.00----------------------------------------------
.........................................................................................................................................................................................................ACCTAAGACTAATGCTTTCTGT...........................2212.002.00-----------------2.00---------------------------------------------------
....................................................................................................................................................................................................ACAGTACCTAAGACTAATGCTTTCTG............................2612.002.00----------2.00----------------------------------------------------------
.............................................................................................TTGAAAAGGGATGATGTAAA.........................................................................................................................................202.000.00--------2.00------------------------------------------------------------
.............................................................................................TTGAAAAGGGATGATGTGGTT........................................................................................................................................2111.001.00-------------------------------------------------------------1.00-------
.............................................................................................TTGAAAAGGGATGATGTGGTTTT......................................................................................................................................2311.001.00--------------------------------------------------------1.00------------
...................................................................................................AGGGATGATGTGGTTTTTTGCCAGGT.............................................................................................................................2611.001.001.00--------------------------------------------------------------------
........................................................................................................................................................................................................................TTTCTGTGGACACCACTGAGCTCTGCCT......2811.001.00-------------------------1.00-------------------------------------------
................................................................TTGCTCAGAGGAATATGAACATTTTATTTT............................................................................................................................................................3011.001.00---------------------1.00-----------------------------------------------
..............................................................................................................................TTTATAATTAATCCTTTAATATTATA..................................................................................................261.000.00--1.00------------------------------------------------------------------
.........................AGGCAGGCCTGAGGCAGATGGCCACTGCTCTC.................................................................................................................................................................................................321.000.00-1.00-------------------------------------------------------------------
...............................................CACTGCTCTTGTGATGTTTGCTCA...................................................................................................................................................................................2411.001.00-----------1.00---------------------------------------------------------
...................................................................................................................................................................................................................AATGCTTTCTGTGGACAC.....................1811.001.00--------------------------------------1.00------------------------------
.................TACAGACAAGGCAGGCC........................................................................................................................................................................................................................1711.001.00----------------------------------1.00----------------------------------
.........................AGGCAGGCCTGAGGCAGATGGCC..........................................................................................................................................................................................................2311.001.00-----------------------------1.00---------------------------------------
...................................................................................................................................................................................TTCTTGATTGTTTTAACACAG..................................................2111.001.00----1.00----------------------------------------------------------------
..........................................................................................................................................................................ATGAATGAATTCTTGATTGTTTT.........................................................2311.001.00--------------------------------------------------1.00------------------
................................................................................................AAAAGGGATGATGTGGTTTTTTGCCAGGCG............................................................................................................................301.000.00-----1.00---------------------------------------------------------------
..........................................................................................................................................................................................................................TCTGTGGACACCACTGAGCTCTGCCTC.....2711.001.001.00--------------------------------------------------------------------
....................AGACAAGGCAGGCCTGAGGC..................................................................................................................................................................................................................2011.001.00--------------------------------1.00------------------------------------
.......................................CAGATGGCCACTGCTCTTGTGA.............................................................................................................................................................................................2211.001.00-----------------------------------------------------1.00---------------
..........AGCTGTTTACAGACAAGGCAGGCCTGA.....................................................................................................................................................................................................................2711.001.00------------------------------------------1.00--------------------------
.........................................................................................ATTTTTGAAAAGGGATGATGTGG..........................................................................................................................................2311.001.00--------1.00------------------------------------------------------------
................TTACAGACAAGGCAGGCCTGAGGCAGACGG............................................................................................................................................................................................................301.000.001.00--------------------------------------------------------------------
......................................................................AGAGGAATATGAACATTT..................................................................................................................................................................1811.001.00------------------------------------1.00--------------------------------
..................................................................................................................................................................................ATTCTTGATTGTTTTAACA.....................................................1911.001.00------------------------------------------------1.00--------------------
.......................................................................................................................................................................................................................................CTGAGCTCTGCCTCAACTCCATA231.000.00---1.00-----------------------------------------------------------------
.......................................CAGATGGCCACTGCTCTTGCG..............................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------
...............................................................................................GAAAAGGGATGATGTGGTTTTT.....................................................................................................................................2211.001.00---------------------------------------------------------1.00-----------
.....................................................................CAGAGGAATATGAACTCTG..................................................................................................................................................................191.000.00------------------------1.00--------------------------------------------
...............TTTACAGACAAGGCAGGCCT.......................................................................................................................................................................................................................2011.001.00--------------------1.00------------------------------------------------
...........................................................................................TTTTGAAAAGGGATGATGTGGTT........................................................................................................................................2311.001.00--------------------------1.00------------------------------------------
.............................................................TGTTTGCTCAGAGGAATATGAAC......................................................................................................................................................................2311.001.00------------------------------------------------------1.00--------------
......................................................................AGAGGAATATGAACATTTTA................................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------------
.................................................................................................................................................................................AATTCTTGATTGTTTTAACACAGTACCTAAG..........................................3111.001.00------------------------1.00--------------------------------------------
................................................................................................AAAAGGGATGATGTGGTTTTTTGCCAGGTG............................................................................................................................3011.001.00-----1.00---------------------------------------------------------------
.................................................................................................AAAGGGATGATGTGGTTTTGCC...................................................................................................................................221.000.001.00--------------------------------------------------------------------
.................................................................................................................................................................................AATTCTTGATTGTTTTAACACAGT.................................................2411.001.00-------------------------------1.00-------------------------------------
................................................................................................AAAAGGGATGATGTGGTTTTT.....................................................................................................................................2111.001.00----------------------1.00----------------------------------------------
.........................................................................................................................................................................................................................TTCTGTGGACACCACTGAGCTCTGCC.......2611.001.00---1.00-----------------------------------------------------------------
..........................................................................GAATATGAACATTTTATTTTTGAAAAGGGATG................................................................................................................................................3211.001.00-----1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................GTGGACACCACTGAGCTCTGC........2111.001.00--------------1.00------------------------------------------------------
....................AGACAAGGCAGGCCTGAGGCAGA...............................................................................................................................................................................................................2311.001.00---1.00-----------------------------------------------------------------
..................................................................................................AAGGGATGATGTGGTTTT......................................................................................................................................1811.001.00-------------------------------------------1.00-------------------------
....................................................................................................................................................................................................ACAGTACCTAAGACTAATGCTTCCTG............................261.000.00-1.00-------------------------------------------------------------------
...................................................................................................AGGGATGATGTGGTTTTTTGCCAGGCGTT..........................................................................................................................291.000.001.00--------------------------------------------------------------------
...................................................................................................AGGGATGATGTGGTTTTTCGC..................................................................................................................................211.000.001.00--------------------------------------------------------------------
....................................................................................................................................................................................................................ATGCTTTCTGTGGACACCACTG................2211.001.00-------------------------1.00-------------------------------------------
............................................................................................................................................................................................................TAAGACTAATGCTTTCTG............................1811.001.00----1.00----------------------------------------------------------------
..............................................................................................TGAAAAGGGATGATGTGGTTTTTTGCC.................................................................................................................................2711.001.00------1.00--------------------------------------------------------------
............................................................................................................................................................................................................TAAGACTAATGCTTTCTGTGGACACCACT.................2911.001.00-----------------------1.00---------------------------------------------
.................................................................................................AAAGGGATGATGTGGTTTTTCG...................................................................................................................................2211.001.001.00--------------------------------------------------------------------
..........................................................................................................ATGTGGTTTTTTGCCAGG..............................................................................................................................1811.001.00--------------------1.00------------------------------------------------
..........................................................................................................................................................................ATGAATGAATTCTTGATTT.............................................................191.000.00---------------------------------------------------1.00-----------------
....................................................................................................GGGATGATGTGGTTTTTTGCC.................................................................................................................................2111.001.00----------------------------------------------------------1.00----------
..............................................................................................................................................................................................TTTAACACAGTACCTAAG..........................................1811.001.00----1.00----------------------------------------------------------------
........................AAGGCAGGCCTGAGGCAGATGG............................................................................................................................................................................................................2211.001.00-----------------------1.00---------------------------------------------
.....TTTACAGCTGTTTACAGACAAGGCAGGCCG.......................................................................................................................................................................................................................301.000.00-1.00-------------------------------------------------------------------
....................AGACAAGGCAGGCCTGAGGCAGAT..............................................................................................................................................................................................................2411.001.00-------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................................CTTTCTGTGGACACCACTGA...............2011.001.00---------------------------1.00-----------------------------------------
................................................................TTGCTCAGAGGAATATG.........................................................................................................................................................................1721.001.00--------------------------------------------------------------0.50--0.50---
.......................................CAGATGGCCACTGCTCTTGTGATGTTCGCT.....................................................................................................................................................................................301.000.001.00--------------------------------------------------------------------
..................................................................................................AAGGGATGATGTGGTTTTTTGCCA................................................................................................................................2411.001.00-----------1.00---------------------------------------------------------
.............................................................................................................................................................................AATGAATTCTTGATTGTTTTAACACAGA.................................................281.000.00----------------------------------------------1.00----------------------
.....................................................................................................................................................................................CTTGATTGTTTTAACACA...................................................1811.001.00-------------------------------------------------1.00-------------------
...................................................................CTCAGAGGAATATGAACATTTTATTTCTG..........................................................................................................................................................291.000.00-----1.00---------------------------------------------------------------
................................................................................................................................................................................................................ACTAATGCTTTCTGTGGACA......................2011.001.00-----------------------------1.00---------------------------------------
...........................................................................................................................................................................TGAATGAATTCTTGATTGTTTTAACA.....................................................2611.001.00---------------------1.00-----------------------------------------------
..............................................................................................................................................................................................................................TGGACACCACTGAGCTCTG.........1911.001.00------------------1.00--------------------------------------------------
.........................AGGCAGGCCTGAGGCAGATGGCCACCGC.....................................................................................................................................................................................................281.000.00---------1.00-----------------------------------------------------------
...............................................................................TGAACATTTTATTTTTGAAAAGGG...................................................................................................................................................2411.001.00----------------------------------------1.00----------------------------
.......................................................................................................................................................................AACATGAATGAATTCTTGATTGTT...........................................................2411.001.00------------------------1.00--------------------------------------------
..........................................................................................................................................................................................................................TCTGTGGACACCACTGAGCTCTGCCCC.....2711.001.00-1.00-------------------------------------------------------------------
....................AGACAAGGCAGGCCTGAGG...................................................................................................................................................................................................................1921.001.00-------------0.50-------------------------------------------------0.50-----
................................................................................................................................................................................................................ACTAATGCTTTCTGTGGACACC....................2211.001.00------1.00--------------------------------------------------------------
...................................................................CTCAGAGGAATATGAACA.....................................................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------
........................................................................................................................................................................ACATGAATGAATTCTTGATTGT............................................................2211.001.00-------------------------------------------------------1.00-------------
........................................................TGTGATGTTTGCTCAGAGG...............................................................................................................................................................................1911.001.00--------------------------------------------1.00------------------------
.............................................................................................................................................................................................TTTTAACACAGTACCTAAGACT.......................................2211.001.00----1.00----------------------------------------------------------------
..............................................................................................................................................................................................................AGACTAATGCTTTCTGTGGACAC.....................2311.001.00---1.00-----------------------------------------------------------------
............................................................................................................................................................................................................TAAGACTAATGCTTTCTGTGGA........................2211.001.00---1.00-----------------------------------------------------------------
...................................................................................................AGGGATGATGTGGTTTTTTGCCAGGGGT...........................................................................................................................281.000.00------1.00--------------------------------------------------------------
.............................................................................................................................................................TAACCTCTTAAACATGAATGAATTCTT..................................................................2711.001.00--------------------------1.00------------------------------------------
........................................................TGTGATGTTTGCTCAGAGGAATATGAACATTTTATTTTTGAAAAGGGATGATGTGGTTTTT.....................................................................................................................................6111.001.00----------------------------------------------------1.00----------------
..............................................................................................................................................................................................................AGACTAATGCTTTCTGTGGACACC....................2411.001.00--------------1.00------------------------------------------------------
.................................................................TGCTCAGAGGAATATGAACA.....................................................................................................................................................................2011.001.00---1.00-----------------------------------------------------------------
................................................................................................................................TATAATTAATCCTTTAATATTATG..................................................................................................2411.001.00------------------------------1.00--------------------------------------
.............................................................................................................TGGTTTTTTGCCAGGGGT...........................................................................................................................181.000.00------------------------------------------------------------1.00--------
...................................................................CTCAGAGGAATATGAACATTTTATTTTCG..........................................................................................................................................................291.000.00-----1.00---------------------------------------------------------------
.............................................................................................................................................................................AATGAATTCTTGATTGTTTTAACACA...................................................2611.001.00------1.00--------------------------------------------------------------
.................................................................................................AAAGGGATGATGTGGTTTTT.....................................................................................................................................2011.001.00-----------1.00---------------------------------------------------------
..........................................................................................................................................................................................................................TCTGTGGACACCACTGAGC.............1921.001.00--------1.00------------------------------------------------------------
.................TACAGACAAGGCAGGCCTGAG....................................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00---------------------
..........................................................................................................................................................................ATGAATGAATTCTTGATTGT............................................................2011.001.00------------------1.00--------------------------------------------------
..................ACAGACAAGGCAGGCCTGA.....................................................................................................................................................................................................................1911.001.00-----------------1.00---------------------------------------------------
......................ACAAGGCAGGCCTGAGGCAGATGGCCACTG......................................................................................................................................................................................................3011.001.00-1.00-------------------------------------------------------------------
..............................................................................................TGAAAAGGGATGATGTGG..........................................................................................................................................1811.001.001.00--------------------------------------------------------------------
..............................................................................................................................TTTATAATTAATCCTTTAATAT......................................................................................................2211.001.00-------1.00-------------------------------------------------------------
..........................................ATGGCCACTGCTCTTGTGATGCTT........................................................................................................................................................................................241.000.00-1.00-------------------------------------------------------------------
.........................................................................................ATTTTTGAAAAGGGATGATG.............................................................................................................................................2011.001.001.00--------------------------------------------------------------------
................................................ACTGCTCTTGTGATGTTTGCTCA...................................................................................................................................................................................2311.001.00------1.00--------------------------------------------------------------
..................ACAGACAAGGCAGGCCTGAGGC..................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................TTCTGTGGACACCACTGAGCTCTGCCTCAAC..3111.001.00-------------------------1.00-------------------------------------------
...............................................................TTTGCTCAGAGGAATATGAACATCT..................................................................................................................................................................251.000.001.00--------------------------------------------------------------------
........................................................TGTGATGTTTGCTCAGAGGA..............................................................................................................................................................................2011.001.00---------------------------1.00-----------------------------------------
.................................................................................................AAAGGGATGATGTGGTTTTTGCC..................................................................................................................................2311.001.00-1.00-------------------------------------------------------------------
.....................................................................................................................................................................TAAACATGAATGAATTCTTG.................................................................2011.001.00--------------------1.00------------------------------------------------
...................................................................................................AGGGATGATGTGGTTTTTT....................................................................................................................................1911.001.00---1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................CTAAGACTAATGCTTTCTGTGGACA......................2511.001.00-----------------------------------------------------------1.00---------
.............................................................................................................................................................................................................AAGACTAATGCTTTCTGTGGACACC....................2511.001.00-------------1.00-------------------------------------------------------
.....................................................................................................................................TTAATCCTTTAATATTATG..................................................................................................1911.001.00--1.00------------------------------------------------------------------
........................................................................................TATTTTTGAAAAGGGATGATGTGGTA........................................................................................................................................261.000.00--------1.00------------------------------------------------------------
...............................................................TTTGCTCAGAGGAATATGAACA.....................................................................................................................................................................2211.001.00-----1.00---------------------------------------------------------------
...................................................................................................AGGGATGATGTGGTTTTTTGCC.................................................................................................................................2211.001.00---------------------------------------1.00-----------------------------
....................................................................................................GGGATGATGTGGTTTTTTGC..................................................................................................................................2011.001.00-----------------------------------1.00---------------------------------
......................ACAAGGCAGGCCTGAGGCAGA...............................................................................................................................................................................................................2111.001.00------1.00--------------------------------------------------------------
............................................................................................TTTGAAAAGGGATGATGTGGT.........................................................................................................................................2111.001.00------------1.00--------------------------------------------------------
.................................................................................................................................ATAATTAATCCTTTAATATTATG..................................................................................................2311.001.00--1.00------------------------------------------------------------------
................................................................................................AAAAGGGATGATGTGGTTTTTT....................................................................................................................................2211.001.00---1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................................TCTGTGGACACCACTGAGCTCTGCC.......2511.001.001.00--------------------------------------------------------------------
..................................................................................................................................................................TCTTAAACATGAATGAATT.....................................................................1911.001.00-----------------------1.00---------------------------------------------
..............................................................................................................................................................................................................AGACTAATGCTTTCTGTGGACAA.....................231.000.00---1.00-----------------------------------------------------------------
............................................................................................TTTGAAAAGGGATGATGTGGTTTTTTGCCAGG..............................................................................................................................3211.001.001.00--------------------------------------------------------------------
...............................................................................................................................................................................................................................GGACACCACTGAGCTCTGCCTCAACT.2611.001.00------------1.00--------------------------------------------------------
..............................................................................................................GGTTTTTTGCCAGGTGTTT.........................................................................................................................1911.001.00-----------------------------------------1.00---------------------------
...................................................................CTCAGAGGAATATGAACAT....................................................................................................................................................................1911.001.00-------------------------------------1.00-------------------------------
..............................................................................................................................TTTATAATTAATCCTTTAATATTACG..................................................................................................261.000.00--1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................CTGTGGACACCACTGAGCTCTGC........2311.001.00---------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................AGACTAATGCTTTCTGTGG.........................1920.500.50------0.50--------------------------------------------------------------
.......................................................................................TTATTTTTGAAAAGGGATG................................................................................................................................................1920.500.500.50--------------------------------------------------------------------
............................CAGGCCTGAGGCAGATG.............................................................................................................................................................................................................1720.500.50----------------------------------------------------------------0.50----
.......................CAAGGCAGGCCTGAGGCAG................................................................................................................................................................................................................1920.500.50-0.50-------------------------------------------------------------------
...............................................................................................................................................................................................................GACTAATGCTTTCTGTGG.........................1830.330.33------------------------------------------------------------------0.33--
.....................................................TCTTGTGATGTTTGCT.....................................................................................................................................................................................1640.250.25-------------------------------------------------------------------0.25-
................................................................................................................................................................................GAATTCTTGATTGTTTT.........................................................1750.200.20--------------------------------------------------------------------0.20
....................................................................................................................................................................................................................ATGCTTTCTGTGGACA......................1660.170.17--------------0.17------------------------------------------------------
................................................................................................AAAAGGGATGATGTGG..........................................................................................................................................1670.140.14-0.14-------------------------------------------------------------------

Antisense strand
TTTCCTTTACAGCTGTTTACAGACAAGGCAGGCCTGAGGCAGATGGCCACTGCTCTTGTGATGTTTGCTCAGAGGAATATGAACATTTTATTTTTGAAAAGGGATGATGTGGTTTTTTGCCAGGTGTTTATAATTAATCCTTTAATATTATGGTTATTAACCTCTTAAACATGAATGAATTCTTGATTGTTTTAACACAGTACCTAAGACTAATGCTTTCTGTGGACACCACTGAGCTCTGCCTCAACTC
...........................................................................................................................(((((.((((((((...((((...(((((.(((.........))).))))).))))...))))))))...)))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532886(GSM532886)
G850T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
....................................................................TCAGAGGAATATGAATACA................................................................................................................................................................... 192.000.00-------2.00-------------------------------------------------------------
......................................................................................................................................................................................................................................ACTGAGCTCTGCCTCAATAG 201.000.00----1.00----------------------------------------------------------------