ID: uc002zsj.1_intron_1_0_chr22_20781838_r.3p
GENE: (9)
chr22:20781788-20782037-


(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
BREAST 		(10)
CELL-LINE 		(11)
CERVIX 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(5)
SKIN

Sense strand
GTTTCTTTTCTGGGTTCACCTCTACCCATTCTCCAGTCCTGGCCCAGTGTCACTGTACCTGTTGAGTTGCCTGTGCCCCCTGCAGTCCAAGAATAGGGCTGGTCTTGGTCACCCCATCAACATTTGTCACAGCAGGGGCTAATGAGGGCACCGGCTGGGGCAGAGTGGACCCCTGGCAGCTCTGCCTCATCCTTCCCCAGTGGCCCACCACGACCTGGATAACACACTCAACTGCAGCTTCCTGGAGCCA
.........................................................................................................(((...((((((.....(((((....))))).....))).)))....((.(((((((((((...((...))..))))))))))).))....)))...................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040011(GSM532896)
G529T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR040013(GSM532898)
G648T. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
...........................................................................................................GTCACCCCATCAACACCA.............................................................................................................................1851.000.0012.009.007.00-5.004.00--3.002.003.00-2.00--2.00--1.00----------1.00---------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCAGA.................................................2117.005.00------4.001.00-----1.00-------------------1.00-----
................................................................................................................................................AGGGCACCGGCTGGGGCAGAGT....................................................................................2217.007.00---1.00---3.00-----1.00------------1.00---1.00--------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCAGT.................................................2117.007.00---1.00--1.00----------1.00----1.00-1.00------1.001.00------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCAG..................................................2015.005.00---4.00-----------------1.00-----------------
..........................................................................................................GGTCACCCCATCAACACCA.............................................................................................................................193.000.001.001.00-------1.00-----------------------------
.....................................................................................................................................................ACCGGCTGGGGCAGAGACCA.................................................................................202.000.00-----------2.00---------------------------
..................................................................................................................................................................................................................CGACCTGGATAACACACTCAACTGCA..............2612.002.00--------------2.00------------------------
...........................................................................................................GTCACCCCATCAACACCC.............................................................................................................................182.000.00-1.00--1.00----------------------------------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCAGTAG...............................................2311.007.00-------------------1.00-------------------
...........................................................................................................GTCACCCCATCAACACCT.............................................................................................................................181.000.00--1.00------------------------------------
..................................................................................................................................................................................................................CGACCTGGATAACACGG.......................171.000.00--------------------1.00------------------
................................................................................................................................................AGGGCACCGGCTGGGGCAGAG.....................................................................................2111.001.00---------------------------1.00-----------
..........................................................................................................GGTCACCCCATCAACACC..............................................................................................................................181.000.00--1.00------------------------------------
................................................................................................................................................AGGGCACCGGCTGGGGCAG.......................................................................................1911.001.00---1.00-----------------------------------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCAGTT................................................2211.007.00----------------1.00----------------------
...........................................................................................................GTCACCCCATCAACATCA.............................................................................................................................181.000.00-----1.00---------------------------------
....................................................................................................................................................................................TCTGCCTCATCCTTCCCCCGT.................................................211.000.00----------------------------1.00----------

Antisense strand
GTTTCTTTTCTGGGTTCACCTCTACCCATTCTCCAGTCCTGGCCCAGTGTCACTGTACCTGTTGAGTTGCCTGTGCCCCCTGCAGTCCAAGAATAGGGCTGGTCTTGGTCACCCCATCAACATTTGTCACAGCAGGGGCTAATGAGGGCACCGGCTGGGGCAGAGTGGACCCCTGGCAGCTCTGCCTCATCCTTCCCCAGTGGCCCACCACGACCTGGATAACACACTCAACTGCAGCTTCCTGGAGCCA
.........................................................................................................(((...((((((.....(((((....))))).....))).)))....((.(((((((((((...((...))..))))))))))).))....)))...................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040011(GSM532896)
G529T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR040013(GSM532898)
G648T. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.................................................................................................................................................GGGCACCGGCTGGGGGAGA...................................................................................... 191.000.00-------------------------1.00-------------
..........................................................................................................................................................................CCCTGGCAGCTCTGCCTT.............................................................. 181.000.00----------------------------------1.00----
...................................................................TGCCTGTGCCCCCTGCCGG.................................................................................................................................................................... 191.000.00-----------------------------------1.00---
............................................CAGTGTCACTGTACCCGAA........................................................................................................................................................................................... 191.000.00-----------------------1.00---------------
...................................................................................................................................................................................................................................TCAACTGCAGCTTCCTATC.... 190.220.00-------------------------------------0.110.11
...................................................................................................................................................................................................................................AGGAAGCTGCAGTTGA....... 1690.110.11------------------------------------0.11--