ID: uc002zrq.2_intron_0_0_chr22_20119575_f.5p
GENE: (1)
chr22:20119525-20119774+


(1)
AGO1.ip OTHER.mut
(10)
B-CELL
(2)
BRAIN
(9)
BREAST
(17)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(10)
SKIN
(1)
UTERUS

Sense strand
ACGGCCGCCGCGCTGCTGGTCGGCTCCAGCACCCTCTTCTTCGTGTTCACGTGAGTCGGCGCCGCGTCTGGGGGCACGCGGGCAGCGATGGGCAGGGCCCGCACAGCCCGGGCACGGGGGCAGCGGTCGCGGGGGCTGGCGGGGCCCCGGGCAGTGGGCGGGCGGGGCGCCGGCTGCAGGCGATGGCAGTCCCTCTCCACCCGCTGGGGCTGGGGGAGTTGAAGCGGTGTGCCGGCGTCCCGGGCACCGG
.......................................................................................................((((((..((......)).((....))..)))))).(((.((((((.((.....))...)))))).)))..............................................................................
......................................................................................................103....................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR189785SRR038858(GSM458541)
MEL202. (cell line)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................GTGGGCGGGCGGGGCTT................................................................................179.000.006.00--1.00-----------------1.00----------------1.00-----------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCAA................................................................................178.000.00------1.00-2.00-2.00----1.00---------1.00-----1.00------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCATT...............................................................................187.000.00-1.00-----1.00---2.00--1.00----------------------------------1.00-----1.00------
.........................................................................................................................................................GTGGGCGGGCGGGGCAAA...............................................................................185.000.00----1.00---------------------1.00--------1.00----1.00----1.00----------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTGG...............................................................................185.000.00-2.00-1.00------------------1.00------------------1.00--------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCATA...............................................................................183.000.00-------------------1.00----------------------------1.00---1.00---------
.........................................................................................................................................................GTGGGCGGGCGGGGCTG................................................................................173.000.00---1.00------------------------------1.00-----------1.00---------------
.........................................................................................................................................................GTGGGCGGGCGGGGCATTT..............................................................................193.000.00--------------------1.00-------1.00---------------1.00-----------------
.........................................................................................................................................................GTGGGCGGGCGGGGCAT................................................................................172.000.00-----1.00------------------1.00-------------------------------------
...........................................................................................................CCGGGCACGGGGGCAGCGGT...........................................................................................................................2012.002.00--2.00-----------------------------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTA................................................................................172.000.00-------------1.00---------------------------------1.00--------------
.........................................................................................................................................................GTGGGCGGGCGGGGCAAAA..............................................................................192.000.00----1.00----1.00----------------------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCATTA..............................................................................192.000.00-----------------1.00-------------------1.00------------------------
.....................................................................................................................GGGCAGCGGTCGCGGGGCT..................................................................................................................191.000.00-----------------------1.00--------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTTT...............................................................................181.000.00------------------------------------1.00-------------------------
..............................................................................................................................................................................................................GGGCTGGGGGAGTTGCCTT.........................191.000.00---------------------------1.00----------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCAAC...............................................................................181.000.00-------1.00------------------------------------------------------
..................................................................................................................................................CCGGGCAGTGGGCGGTGT......................................................................................181.000.00---------1.00----------------------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCAAG...............................................................................181.000.00---------------------------------1.00----------------------------
.............................................................................................................GGGCACGGGGGCAGCGCGC..........................................................................................................................191.000.00---------------------------------------1.00----------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTTA...............................................................................181.000.00-1.00------------------------------------------------------------
...........................................................................................................................................................GGGCGGGCGGGGCGCCCC.............................................................................181.000.00----1.00---------------------------------------------------------
.................................................................................................CCCGCACAGCCCGGGCGCGA.....................................................................................................................................201.000.00------------------------------1.00-------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTGGG..............................................................................191.000.00------------------1.00-------------------------------------------
........................................................CGGCGCCGCGTCTGGAGC................................................................................................................................................................................181.000.00---------------------------------------------------1.00----------
.........GCGCTGCTGGTCGGCGGCC..............................................................................................................................................................................................................................191.000.00-----------------------------------------------------1.00--------
..........................................................................CACGCGGGCAGCGATGGG..............................................................................................................................................................1811.001.00------1.00-------------------------------------------------------
................................................................................................................................................................GGCGGGGCGCCGGCTTTTT.......................................................................191.000.00--------------------------------1.00-----------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCTAA...............................................................................181.000.00----------------1.00---------------------------------------------
.....................................................................................................................................GGCTGGCGGGGCCCCGG....................................................................................................1711.001.00--1.00-----------------------------------------------------------
.........................................CGTGTTCACGTGAGTCGGC..............................................................................................................................................................................................1911.001.00--------------------------------------------------1.00-----------
..................................................................................................................................................CCGGGCAGTGGGCGGTACA.....................................................................................191.000.00-------------------------------------------1.00------------------
.............................................................................................................................................................................................................GGGGCTGGGGGAGTTTTTT..........................191.000.00------------------------------------------------------1.00-------
.........................................................................................................................................................GTGGGCGGGCGGGGCAAT...............................................................................181.000.00-----1.00--------------------------------------------------------
................................................ACGTGAGTCGGCGCCGCGTCTGGGGGCA..............................................................................................................................................................................2811.001.00------------1.00-------------------------------------------------
..................................................................................................................................................................CGGGGCGCCGGCTGCTGGT.....................................................................191.000.00------------------------------------------1.00-------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCGGT...............................................................................1840.250.25------------0.25-------------------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCGTT...............................................................................1840.250.25-----0.25--------------------------------------------------------
.........................................................................................................................................................GTGGGCGGGCGGGGCGGGTG.............................................................................2040.250.25----------------------------------------------------------0.25---
.........................................................................................................................................................GTGGGCGGGCGGGGCG.................................................................................1640.250.25--------------------------------------------------------0.25-----
.........................................................................................................................................................GTGGGCGGGCGGGGCGTA...............................................................................1840.250.25---------------------------------------------------------0.25----
..........................................................................................................CCCGGGCACGGGGGC.................................................................................................................................1550.200.20-----------------------------------------------------------0.20--
........................................................................................................................................................AGTGGGCGGGCGGGG...................................................................................1560.170.17------------------------------------------------------------0.17-
.........................................................................................................GCCCGGGCACGGGGG..................................................................................................................................1570.140.14-------------------------------------------------------------0.14

Antisense strand
ACGGCCGCCGCGCTGCTGGTCGGCTCCAGCACCCTCTTCTTCGTGTTCACGTGAGTCGGCGCCGCGTCTGGGGGCACGCGGGCAGCGATGGGCAGGGCCCGCACAGCCCGGGCACGGGGGCAGCGGTCGCGGGGGCTGGCGGGGCCCCGGGCAGTGGGCGGGCGGGGCGCCGGCTGCAGGCGATGGCAGTCCCTCTCCACCCGCTGGGGCTGGGGGAGTTGAAGCGGTGTGCCGGCGTCCCGGGCACCGG
.......................................................................................................((((((..((......)).((....))..)))))).(((.((((((.((.....))...)))))).)))..............................................................................
......................................................................................................103....................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR189785SRR038858(GSM458541)
MEL202. (cell line)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................TCCCTCTCCACCCGCTATAG......................................... 201.000.00-----------------------------1.00--------------------------------