ID: uc002zpm.2_intron_2_0_chr22_19443292_r.5p
GENE: UFD1L(9)
chr22:19443910-19444159-


(1)
AGO1.ip
(1)
AGO2.ip
(11)
B-CELL
(8)
BRAIN
(18)
BREAST
(46)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(2)
HELA
(5)
LIVER
(4)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGGAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGCGTGAGTACCAGACCACTTGACTTATATTGCTGTGCCCTCTGCTCCTTGAAATTAGAGCACTCACTCAAGGTGTTCTCCATGATGCTCGATGGACATCAGCAGGGGTTAGGCCTCTGGGTACCTGTGCATATGCAAATCTGCCACTCGCTCAGTTACCAAACCCTTTTGTATCCACTCTCTCCTGGAATCTTCCCAACAGC
.................................................................................((((((((((..(((((.....((((((((.......))))))))...(((((.((....))))))).)))))..)))).....))))))...............................................................................
...........................................................................76.............................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040040(GSM532925)
G612N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR343335SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.....................................................................................................................................................CAGGGGTTAGGCCTCTAA...................................................................................183270.0024.33-24.3342.3323.0024.0026.0019.3318.0010.679.3315.6711.338.6712.00-6.003.67-2.331.332.33-2.331.67---2.001.67------1.00-------0.33-0.33--------------------------------------0.33--------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTG....................................................................................17263.0063.0058.50-------------3.50--0.50--------------------------0.50------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAA..................................................................................19359.0024.33-6.671.335.334.004.333.672.336.675.332.675.332.671.00-1.672.00-2.00-0.33-0.330.33-----------0.33-----0.33----------------------0.33----------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTC......................................................................................15551.8051.8049.60-------------0.40--0.20-----------0.20------0.20-----0.20------------------0.40-----0.20-----0.20-0.20-----------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTTA..................................................................................19336.3324.33-5.33-0.331.004.332.004.001.002.331.332.331.671.001.33-0.67-0.671.000.33-1.000.33---0.67-0.33-0.33--------------------1.00-------0.67----0.33----------0.33---0.33--------0.33---------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAACA.................................................................................20325.6724.33-1.331.671.334.670.33-1.333.671.002.672.331.001.001.000.670.33-0.330.67---------------0.33---------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCT.....................................................................................16324.3324.3314.33-------------3.67--2.33----------------1.00-------1.00-0.670.33----------0.33----------0.33------------------------0.33------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAA..................................................................................19324.3324.33-6.67-3.002.67--2.000.331.001.330.671.001.00-1.00---1.67--0.330.33----0.67-----------------------------------------------------0.33-------0.33--------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTTTA.................................................................................20323.0024.33-6.67-0.332.00--2.331.006.330.670.330.330.33--1.33-0.67-0.33--------------------------------------------------------------0.33---------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTA....................................................................................17321.6724.3315.33-------------4.33--0.33--------------0.33-0.33--------------------------------------------------0.33-------0.33-0.33---------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTACC..................................................................................19320.0024.33-0.673.675.67-2.332.330.671.330.670.330.670.331.00----------------------------------------------------0.33--------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTTG..................................................................................19317.3324.339.33-3.001.000.33--0.33-0.330.33---1.67-0.33--0.67-------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAAA.................................................................................20315.0024.33-1.332.000.673.672.00-0.33-0.330.33--1.331.33-0.33--1.33-------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTG...................................................................................18314.3324.334.00-3.67-0.33---1.67--1.00--0.67-0.67-1.00-1.00-------0.33----------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTTAA.................................................................................20314.3324.33-5.33-0.670.33-4.33--0.671.00-------0.670.330.33-0.330.33---------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAAA.................................................................................20313.6724.33-1.00-0.670.33--2.004.001.67-2.67------0.67-------------0.33--------0.33---------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAC..................................................................................19312.3324.33--0.334.332.332.000.330.330.67-0.330.67-0.33--0.33--------------------------0.33-------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCT.....................................................................................15511.2011.204.00----------------4.80----------------0.60-0.20-------------------0.20----0.20-0.400.20--------0.200.200.20-----------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAC...................................................................................18311.0024.33--0.674.000.670.33--0.331.001.33-1.001.33--------------------------0.33----------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTA...................................................................................1838.3324.33-1.00-0.330.67----1.000.33-1.33----0.330.67-0.33---0.33-0.33--------------------0.67-------------------------------0.33-0.33---------0.33-------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTTA.................................................................................1956.8011.20-5.40-0.20------------0.40-0.20-0.20--------0.20----------------------------------------------------------------------0.20----------------
......................................................................................................................................................AGGGGTTAGGCCTCTTAA..................................................................................1856.4011.20-2.401.60-0.20--0.40-0.40--0.60--0.20--0.200.20----------------------------------------------------------------------------------0.20--------------
......................................................................................................................................................AGGGGTTAGGCCTCTGAA..................................................................................186.000.00------------------------2.00-----2.00--1.00---------------------1.00-------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAAAA..................................................................................1955.2051.80--0.20----0.402.40-0.401.40--------0.20-----0.20------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGACC.................................................................................2025.0063.00--1.001.00--1.00--1.000.50-----------------------------------------------------------0.50----------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAAA...................................................................................1854.4051.80-0.60-0.600.40-1.20---0.40--0.20-0.40----------0.40--------------0.20---------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTA..................................................................................1854.2011.20-0.80-------0.600.20--0.60------0.20--------0.80-------0.20-0.20-----------------0.20---------------------------------------0.20---0.20---------------
......................................................................................................................................................AGGGGTTAGGCCTCTGACC.................................................................................193.000.00---3.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCA.....................................................................................1652.8051.801.00-------------0.60--0.40-----------------------0.20--------------0.40-------------------------------------------------------0.20----
......................................................................................................................................................AGGGGTTAGGCCTCTAAA..................................................................................1852.6011.20---0.800.40----0.200.60-0.20-----0.20----------------0.20---------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTACC.................................................................................2032.3324.33------2.33--------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTAACA.................................................................................1952.2011.20---0.20--1.80--0.20-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCACA...................................................................................1852.2051.80---0.20-0.40----0.20-0.200.80----------------------------------------------------------------------------------0.20-------------0.20------
.....................................................................................................................................................CAGGGGTTAGGCCTCCCA...................................................................................1852.2051.80----0.40-------0.20-----------------0.20------0.200.20------------------0.200.20---0.20---------------------------------------------0.20-----0.20--
......................................................................................................................................................AGGGGTTAGGCCTCTACCA.................................................................................1952.0011.20------------------------0.20----0.80------0.20---0.20---------------------0.20--0.20-------------------------------------0.20-------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAAC.................................................................................2032.0024.33--1.001.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTAA.................................................................................1952.0011.20--------1.00--1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GGGGTTAGGCCTCTGACCA................................................................................192.000.00--------------------------2.00------------------------------------------------------------------------------------------
................................................................................TGTGCCCTCTGCTCCTTGTGG.....................................................................................................................................................212.000.00---------------------2.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACTCTCTCCTGGAATCTG.........182.000.00----------------------------------------------1.00------1.00---------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAC..................................................................................1932.0024.33---0.33-----0.33--0.33---------0.330.33--------------------------------------------------------------0.33------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTAAA.................................................................................1951.8011.20----0.20--0.40--0.20-0.20------0.60------------------0.20------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTTAC.................................................................................2031.6724.33----0.67-------0.67------0.33-------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTACCA.................................................................................2031.6724.33----1.000.33------0.33--------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTAAAA.................................................................................1951.6011.20---0.20---0.20----0.200.80---------------------------0.20---------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCACCA..................................................................................1951.6051.80----0.40-----0.60-0.40---------------------------0.20----------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGAA..................................................................................1921.5063.00-0.50--------------------0.500.50---------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGACCA................................................................................2121.5063.00-0.50----------------------0.500.50-------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGAC..................................................................................1921.5063.00-------------------------1.00------------------------------------------0.50------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCACC...................................................................................1851.4051.80--0.40-------0.20-0.40--0.40-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTACA..................................................................................1931.3324.33----0.33-------0.67--------------------------------------------0.33-----------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCG...................................................................................1831.3324.33-1.33-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTACA.................................................................................2031.3324.33----1.00--------------0.33-------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTACCC.................................................................................1951.2011.201.20--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAAC.................................................................................2031.0024.33-------------------1.00-------------------------------------------------------------------------------------------------
................................................................................TGTGCCCTCTGCTCCTTGGGTA....................................................................................................................................................221.000.00---------------------1.00-----------------------------------------------------------------------------------------------
.................................................................................GTGCCCTCTGCTCCTTGTG......................................................................................................................................................191.000.00---------------------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................GCAGGGGTTAGGCCTCTAACA.................................................................................211.000.00---1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTGAC..................................................................................181.000.00--------------------------------------1.00------------------------------------------------------------------------------
.................................................................................GTGCCCTCTGCTCCTTGTGG.....................................................................................................................................................201.000.00---------------------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTACCC.................................................................................2031.0024.33---1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTGCCA.................................................................................191.000.00--------------------------------1.00------------------------------------------------------------------------------------
.................................................................................GTGCCCTCTGCTCCTTGTGGG....................................................................................................................................................211.000.00---------------------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................GCAGGGGTTAGGCCTCTTA...................................................................................191.000.00-------------------------------1.00-------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTC...................................................................................1831.0024.33-------0.33-----0.33--0.33----------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGCCA.................................................................................2021.0063.00-------------------------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCC...................................................................................1831.0024.33---0.670.33----------------------------------------------------------------------------------------------------------------
..................................................................................TGCCCTCTGCTCCTTGTGGG....................................................................................................................................................201.000.00---------------------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................GCAGGGGTTAGGCCTCTT....................................................................................181.000.00------------------------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTG..................................................................................1851.0011.201.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTGGT..................................................................................181.000.00-------------------------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTGACCA................................................................................201.000.00------------------------------------1.00--------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTGCC..................................................................................181.000.00---------------------------------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTACC..................................................................................1850.8011.20-------------0.40----------------0.20-0.20------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCAA..................................................................................1930.6724.33-0.33--------------------------------------------------------------------------------------0.33----------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCCA..................................................................................1930.6724.33----------0.33--------------------------------0.33-------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTC....................................................................................1730.6724.330.67--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTACG..................................................................................1930.6724.33------------0.67--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAG...................................................................................1830.6724.33--0.67------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAG..................................................................................1930.6724.33-0.330.33------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAAC...................................................................................1850.6051.80----0.20-----0.20----0.20-----------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTACA..................................................................................1850.6011.20------------0.200.20------------------------------------------------0.20------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTCCA..................................................................................1850.6011.20-----------------------------0.20--0.20-----------------------------------------------------------------------0.20------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGACCC................................................................................2120.5063.00-------------------------0.50-------------------------------------------------------------------------------------------
.......TGAAGCCGACCACAGTGG.................................................................................................................................................................................................................................1820.500.50---------------------------------------------0.50-----------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGTT..................................................................................1920.5063.00-0.50-------------------------------------------------------------------------------------------------------------------
...........................ATGCTGGAGAGCTGGGCT.............................................................................................................................................................................................................1820.500.50-----------------------------------------------------------------------0.50---------------------------------------------
..........................TATGCTGGAGAGCTGGGCTTC...........................................................................................................................................................................................................2120.500.50---------------------------------------------------------------------0.50-----------------------------------------------
........................GCTATGCTGGAGAGCTGGG...............................................................................................................................................................................................................1920.500.50----------------------------------------------------------0.50----------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAACC..................................................................................1950.4051.80----0.40----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTAAAC.................................................................................1950.4011.20---0.40-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCCAA...................................................................................1850.4051.80----------0.20------------------------------------------------------------------------------------------------0.20---------
......................................................................................................................................................AGGGGTTAGGCCTCTCAA..................................................................................1850.4011.20------------------------------------------------------------------------0.40--------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCCACC..................................................................................1950.4051.80------------0.20---------------------------0.20----------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTGA..................................................................................1850.4011.20--0.40------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAC....................................................................................1750.4051.80----------------------------------------0.40----------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTAC.................................................................................1950.4011.20----------0.20----------------------------0.20-----------------------------------------------------------------------------
..................................................................................................................................................CAGCAGGGGTTAGGC.........................................................................................1550.400.40----------------------------------------------------------------------------------------------------------0.20------0.20---
.....................................................................................................................................................CAGGGGTTAGGCCTCTCACA.................................................................................2030.3324.33----0.33----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTGAA.................................................................................2030.3324.33-0.33-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAGC.................................................................................2030.3324.33-----------------------------------------------------------------------------0.33---------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCCC..................................................................................1930.3324.33------------0.33--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAAT..................................................................................1930.3324.33----0.33----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTGC..................................................................................1930.3324.33--------0.33------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCACC.................................................................................2030.3324.33--0.33------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAT..................................................................................1930.3324.33-0.33-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTCT...................................................................................1830.3324.33---------0.33-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTAACC.................................................................................2030.3324.33----0.33----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTC..................................................................................1850.2011.20--------------------------------------------------------------------------------------------------0.20------------------
......................................................................................................................................................AGGGGTTAGGCCTCTAACC.................................................................................1950.2011.20------------------------------------------------------------------0.20--------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCCTAA..................................................................................1950.2051.80------0.20--------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCCACA..................................................................................1950.2051.80---------------------------------------------------------------------------------------------------0.20-----------------
......................................................................................................................................................AGGGGTTAGGCCTCTTCT..................................................................................1850.2011.20-------------------------------------------------------------------------------------------------------------0.20-------
......................................................................................................................................................AGGGGTTAGGCCTCTC....................................................................................1650.2011.20-----------------0.20---------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTCTT..................................................................................1850.2011.20------0.20--------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAACA..................................................................................1950.2051.80----0.20----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCCT....................................................................................1750.2051.80-----------------0.20---------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTTAT.................................................................................1950.2011.20-0.20-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCGAAA..................................................................................1950.2051.80-------0.20-------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCAA....................................................................................1750.2051.80---------------------------------------------------------------0.20-----------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTACA.................................................................................1950.2011.20-------0.20-------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTCTA..................................................................................1850.2011.20---------------------------------------------------------------------------------------------------------0.20-----------
......................................................................................................................................................AGGGGTTAGGCCTCTAA...................................................................................1750.2011.20--------------------------------------------------------------------------0.20------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTTAGA.................................................................................1950.2011.20--------------------0.20------------------------------------------------------------------------------------------------

Antisense strand
AGGAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGCGTGAGTACCAGACCACTTGACTTATATTGCTGTGCCCTCTGCTCCTTGAAATTAGAGCACTCACTCAAGGTGTTCTCCATGATGCTCGATGGACATCAGCAGGGGTTAGGCCTCTGGGTACCTGTGCATATGCAAATCTGCCACTCGCTCAGTTACCAAACCCTTTTGTATCCACTCTCTCCTGGAATCTTCCCAACAGC
.................................................................................((((((((((..(((((.....((((((((.......))))))))...(((((.((....))))))).)))))..)))).....))))))...............................................................................
...........................................................................76.............................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040040(GSM532925)
G612N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR343335SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.....................................................................................................................................................CAGGGGTTAGGCCTCTAA................................................................................... 1831.670.00----0.33-------0.33----------------------------------------------0.67------------------0.33--------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTA................................................................................... 1831.330.00--0.33-------------------0.330.33-----------------------0.33---------------------------------------------------------------------
......................................................................................................................................................AGGGGTTAGGCCTCTACC.................................................................................. 1851.000.00------------------------------------------------------1.00--------------------------------------------------------------
........................................................................................................................TGTTCTCCATGATGCAATG............................................................................................................... 191.000.00-------------------------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................TTAGGCCTCTGGGTATGG............................................................................. 181.000.00--------------------------------------------------1.00------------------------------------------------------------------
...........................................................................................................................................................TTAGGCCTCTGGGTATGGA............................................................................ 191.000.00-1.00-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................TTAGGCCTCTGGGTATGAA............................................................................ 191.000.00-1.00-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................TTAGGCCTCTGGGTATGTA............................................................................ 191.000.00-------------------------------------------------1.00-------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTGTC.................................................................................. 1921.000.00---------------------------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTCAA................................................................................. 2030.330.00----------------------------------------------------------------------------------------------0.33----------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTAA.................................................................................. 1930.330.00--------------------0.33------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGAGGCCTAACCCCTG..................................................................................... 1630.330.33-----------------0.33---------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTTCA.................................................................................. 1930.330.00---------------------------------------------------------------------------------------0.33-----------------------------
.....................................................................................................................................................CAGGGGTTAGGCCTCTA.................................................................................... 1750.200.00---------------------------------------------------------------------------------------------------------------0.20-----
.....................................................................................................................................................CAGGGGTTAGGCCTCAAA................................................................................... 1850.200.00-------------------------------------------0.20-------------------------------------------------------------------------
.....................................................................................................................................................GAGGCCTAACCCCTG...................................................................................... 1550.200.20-------------------------------------------------------------------------------------------------------------------0.20-
.........................................................................AGGGCACAGCAATAT.................................................................................................................................................................. 1580.120.12--------------------------------------------------------------------------------------------------------------------0.12