ID: uc002zpf.1_intron_10_0_chr22_19363316_r.3p
GENE: HIRA(14)
chr22:19363266-19363515-


(1)
AGO2.ip 		(4)
B-CELL 		(6)
BRAIN 		(21)
BREAST 		(14)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CACAACCTTCTAGGTGTCCATAATTTTGACACATGAAAATTTTAAAGAAATGGGAGTAGTAGATTGTATCTTGACATTTTTTGTGTTTATGGAAGTTTGATATTTGTGCCTTTTTTAGTAGGCTCCAAATAATGCAAATACTAGACCTCCAGATCCTTTCAGGATTGCGCTTGACATGCCTCCCCTCTTCTTCACCCCAGTATGAATGCTACCTCTACTCCTGCTGCATTGTCACCTTCTGTGTTAACGA
...................................................(((((((.((((((...(((.(((((.....)))))...))))))))).)))))...))............................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040024(GSM532909)
G613N. (cervix)		SRR189782SRR040038(GSM532923)
G531N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040040(GSM532925)
G612N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)		SRR189785SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......................................................AGTAGTAGATTGTATAGTT.................................................................................................................................................................................1952.000.007.008.003.006.00---3.00--1.00--1.002.00---2.002.00-----1.001.00--1.00-1.00-1.001.00--------1.00-----1.00----1.00--------1.001.00-1.00------1.00---1.00--1.001.00---1.00--
.....................................................GAGTAGTAGATTGTATAGTT.................................................................................................................................................................................2050.000.006.004.004.002.006.001.001.001.00--3.00-2.00--1.00-2.00---1.002.00-2.00-----------1.00-------1.00-1.001.00-----1.00----1.00---1.00----1.00-1.00-1.001.00----------1.00----
.....................................................GAGTAGTAGATTGTATAGT..................................................................................................................................................................................1924.000.0011.006.004.00------------------1.00-----------------------------------1.00------------------------1.00-----
......................................................AGTAGTAGATTGTATAGT..................................................................................................................................................................................1820.000.005.004.00------1.00---1.00-1.00---1.001.00------------1.00--1.00---1.00-1.00-----------------1.00-----1.00----------------------
....................................................GGAGTAGTAGATTGTATAGTT.................................................................................................................................................................................2114.000.00----1.00-1.00-2.00--2.00----1.00---1.00--2.00------1.00------1.001.00------------------------------------1.00------------
.....................................................GAGTAGTAGATTGTATAG...................................................................................................................................................................................189.000.00-----5.00-------3.00--------------------------1.00-----------------------------------------------
.......................................................GTAGTAGATTGTATCGTT.................................................................................................................................................................................188.000.00------1.001.00---1.00------------------------------1.00--------1.00---1.001.00----1.00--------------------------
....................................................GGAGTAGTAGATTGTATAGT..................................................................................................................................................................................205.000.00--------1.00-------2.00----------------------------1.00--------------------------------------1.00---
........................................................................................ATGGAAGTTTGATATTTGTGCCTCT.........................................................................................................................................253.000.00---------3.00------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACTCCTGCTGCATTGTCACCTTCTGTGTC.....292.000.00---------2.00------------------------------------------------------------------------------
...................................................GGGAGTAGTAGATTGTATAGTT.................................................................................................................................................................................222.000.00--------1.00--------1.00----------------------------------------------------------------------
.....................................................GAGTAGTAGATTGTATAGA..................................................................................................................................................................................192.000.001.001.00--------------------------------------------------------------------------------------
....................................................GGAGTAGTAGATTGTATAATT.................................................................................................................................................................................212.000.00------1.00------------------------------------------------------------------------1.00--------
................................................................................................................................................................................................................CTACCTCTACTCCTGCTGCATTG...................2311.001.00---------------1.00------------------------------------------------------------------------
...................................................GGGAGTAGTAGATTGTATAA...................................................................................................................................................................................201.000.00--------------------1.00-------------------------------------------------------------------
...................................................GGGAGTAGTAGATTGTATAGG..................................................................................................................................................................................211.000.00----------------------------------------------------------------------1.00-----------------
....................................................GGAGTAGTAGATTGTATAAT..................................................................................................................................................................................201.000.00-----------1.00----------------------------------------------------------------------------
......................................................AGTAGTAGATTGTATAGTA.................................................................................................................................................................................191.000.00------------1.00---------------------------------------------------------------------------
......................................................AGTAGTAGATTGTATGGTT.................................................................................................................................................................................191.000.00--------------1.00-------------------------------------------------------------------------
.......................................................GTAGTAGATTGTATCGTTA................................................................................................................................................................................191.000.00------------------------------------------------1.00---------------------------------------
...................................................GGGAGTAGTAGATTGTATAG...................................................................................................................................................................................201.000.00----------------------------------------------------------------------------1.00-----------
........................TTTGACACATGAAAATTTTAAAGAAATGG.....................................................................................................................................................................................................2911.001.00--------------------------------------------------1.00-------------------------------------
................................................................................................................................................................................................................CTACCTCTACTCCTGCTGCATTGTCACCTCCT..........321.000.00----------------------------1.00-----------------------------------------------------------
....................................................GGAGTAGTAGATTGTATAGAT.................................................................................................................................................................................211.000.00---------------------------1.00------------------------------------------------------------
............................................................................................................................................................................................................AATGCTACCTCTACTCCTGC..........................2011.001.00--------------------------------------------------------------------------1.00-------------
................................................................................................................................................................................................................CTACCTCTACTCCTGCTGCAGTG...................231.000.00---------------1.00------------------------------------------------------------------------
......................................................AGTAGTAGATTGTATACTT.................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------------------------------------
....................................................GGAGTAGTAGATTGTATAG...................................................................................................................................................................................191.000.00--------------------------------------------------------------------1.00-------------------
.......................................................GTAGTAGATTGTATCGTC.................................................................................................................................................................................181.000.00------------------------------------------------------------1.00---------------------------
..............................................................................................................................................................................................................................GCTGCATTGTCACCTTCTGTGTT.....2311.001.00------------------------------------------------------------------------------1.00---------
....................................................GGAGTAGTAGATTGTATAGGT.................................................................................................................................................................................211.000.00------1.00---------------------------------------------------------------------------------
....................................................GGAGTAGTAGATTGTATAAAT.................................................................................................................................................................................211.000.00------1.00---------------------------------------------------------------------------------
.................................................ATGGGAGTAGTAGAT..........................................................................................................................................................................................1540.250.25---------------------------------------------------------------------------------------0.25

Antisense strand
CACAACCTTCTAGGTGTCCATAATTTTGACACATGAAAATTTTAAAGAAATGGGAGTAGTAGATTGTATCTTGACATTTTTTGTGTTTATGGAAGTTTGATATTTGTGCCTTTTTTAGTAGGCTCCAAATAATGCAAATACTAGACCTCCAGATCCTTTCAGGATTGCGCTTGACATGCCTCCCCTCTTCTTCACCCCAGTATGAATGCTACCTCTACTCCTGCTGCATTGTCACCTTCTGTGTTAACGA
...................................................(((((((.((((((...(((.(((((.....)))))...))))))))).)))))...))............................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040024(GSM532909)
G613N. (cervix)		SRR189782SRR040038(GSM532923)
G531N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040040(GSM532925)
G612N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)		SRR189785SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................................................CTTCACCCCAGTATGAAT........................................... 181.000.00----------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................CTCCCCTCTTCTTCACGCA.................................................... 191.000.00--------------------------------------------------------------------------------------1.00-
...............................................................................................................................................AAGGATCTGGAGGTC............................................................................................ 1550.200.20-------------------------0.20--------------------------------------------------------------