ID: uc002zmj.1_intron_4_0_chr22_17670923_r.5p
GENE: CECR1(2)
chr22:17672373-17672622-


(1)
AGO1.ip OTHER.mut
(7)
B-CELL
(4)
BRAIN
(6)
BREAST
(16)
CELL-LINE
(4)
CERVIX
(2)
HEART
(3)
LIVER
(5)
OTHER
(9)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GAAACTCACCCTGAGTTTATTGGAATCAAAATCATTTATTCGGATCACAGGTGAGAGAGAATATTGCTGAAAAGCTCGGGTTGGGAGGCTGGGATGCAGGCAGAGCTACTAGGCTGGGAGGGGAGGGGTGAGAAGCGGGGCTGGGAGGCCGGGAGAGGCCCAGCACTGGTGCCAAGGAGCTGTGCTGTGCCTGTGTGAGAGCACAGTCCTAGGTAAGTGCGGTGACCCAACAATGAATTGCTGCCTGAAG
........................................................................................................(((.((..(((...........))).)).)))..((((....))))....................................................................................................
....................................................................................................101................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189785SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
...................................................................................................................................GAAGCGGGGCTGGGATC......................................................................................................1716.000.0016.00---------------------------------------------------------
....................................................................................................................................AAGCGGGGCTGGGAGCGCG...................................................................................................199.000.00--1.003.00--2.00--------------1.00-------------1.001.00---------------------
..................................................................................................................................AGAAGCGGGGCTGGGCGCG.....................................................................................................197.000.00----------1.00-----1.001.00-1.00--------------------1.00--1.00--1.00-----------
................................CATTTATTCGGATCACAG........................................................................................................................................................................................................1813.003.00-------------1.00--------------1.00---------------1.00-------------
...................................................................................................................................GAAGCGGGGCTGGGAACG.....................................................................................................182.000.00----1.00----------------------------1.00------------------------
.................................................................................................................................GAGAAGCGGGGCTGGGC........................................................................................................172.000.00-------1.00--------------------------1.00-----------------------
.........................................................................................................CTACTAGGCTGGGAGGACC..............................................................................................................................192.000.00-----2.00----------------------------------------------------
.................................ATTTATTCGGATCACAG........................................................................................................................................................................................................1721.501.50-------------------------------------------------0.50-0.500.50-----
........CCCTGAGTTTATTGG...................................................................................................................................................................................................................................1591.441.44--------1.33--0.11----------------------------------------------
..................................................................................GGGAGGCTGGGATGCAGGCAG...................................................................................................................................................2111.001.00-----------------------------------------1.00----------------
........................................................................................CTGGGATGCAGGCAGAGCG...............................................................................................................................................191.000.00--1.00-------------------------------------------------------
...................................................................................................................................GAAGCGGGGCTGGGAA.......................................................................................................161.000.00--------------------1.00-------------------------------------
....................................................................................................................................AAGCGGGGCTGGGAGTT.....................................................................................................171.000.00-----------------------------------------------1.00----------
................................................................................TTGGGAGGCTGGGATGGGGT......................................................................................................................................................201.000.00------------------1.00---------------------------------------
.................................ATTTATTCGGATCACAGGT......................................................................................................................................................................................................1911.001.00------------------------------------------1.00---------------
...................................................................................................................................GAAGCGGGGCTGGGAAT......................................................................................................171.000.00--------------1.00-------------------------------------------
............GAGTTTATTGGAATCAAAATCATTTATTCGG...............................................................................................................................................................................................................3111.001.00---------1.00------------------------------------------------
.............................................................................................................TAGGCTGGGAGGGGAAGCG..........................................................................................................................191.000.00--1.00-------------------------------------------------------
.................................ATTTATTCGGATCACAGGTG.....................................................................................................................................................................................................2011.001.00---------------------------------------------1.00------------
....................................................................................................................................AAGCGGGGCTGGGAGCACA...................................................................................................191.000.00-------1.00--------------------------------------------------
..................................................................................................................................AGAAGCGGGGCTGGGAGGGCGG..................................................................................................221.000.00---------------1.00------------------------------------------
...........................AAAATCATTTATTCGGATCACAGATC.....................................................................................................................................................................................................261.000.00-------------------------------------1.00--------------------
.................................ATTTATTCGGATCACAGGTGA....................................................................................................................................................................................................2111.001.00--------------------------1.00-------------------------------
............................................................................................................................GGGGTGAGAAGCGGGGC.............................................................................................................1711.001.00-------------------------1.00--------------------------------
................................................................................TTGGGAGGCTGGGATGCC........................................................................................................................................................181.000.00------------------------------------------------1.00---------
....................................................................................................................................AAGCGGGGCTGGGAGTGCG...................................................................................................191.000.00------------------------------1.00---------------------------
...................................................................................................................................GAAGCGGGGCTGGGAAGC.....................................................................................................181.000.00----1.00-----------------------------------------------------
.................................................................................................................................GAGAAGCGGGGCTGGGCGC......................................................................................................191.000.00-----------------------------1.00----------------------------
............................................................................................................CTAGGCTGGGAGGGGAGGA...........................................................................................................................191.000.00--1.00-------------------------------------------------------
.................................................................................TGGGAGGCTGGGATGAGTG......................................................................................................................................................191.000.00------------------------1.00---------------------------------
................................................AGGTGAGAGAGAATATTGCTGAAAAGC...............................................................................................................................................................................2711.001.00--------------------------------------1.00-------------------
.............................................................................................................TAGGCTGGGAGGGGAGGGCCTC.......................................................................................................................221.000.00-------------------------------1.00--------------------------
.....................GGAATCAAAATCATTTATTCGGATCACAGG.......................................................................................................................................................................................................3011.001.00----------------------1.00-----------------------------------
................................................................................................................................TGAGAAGCGGGGCTGGGC........................................................................................................181.000.00--------------------------------1.00-------------------------
..................................TTTATTCGGATCACAG........................................................................................................................................................................................................1620.500.50--------------------------------------------------0.50-------
...................................................................................................................................GAAGCGGGGCTGGGAGCGCG...................................................................................................2080.500.25----------0.12-------------------------------------------0.120.120.12-
...................................................................................................................................GAAGCGGGGCTGGGAG.......................................................................................................1680.250.25-----------------------------------------------------0.12---0.12

Antisense strand
GAAACTCACCCTGAGTTTATTGGAATCAAAATCATTTATTCGGATCACAGGTGAGAGAGAATATTGCTGAAAAGCTCGGGTTGGGAGGCTGGGATGCAGGCAGAGCTACTAGGCTGGGAGGGGAGGGGTGAGAAGCGGGGCTGGGAGGCCGGGAGAGGCCCAGCACTGGTGCCAAGGAGCTGTGCTGTGCCTGTGTGAGAGCACAGTCCTAGGTAAGTGCGGTGACCCAACAATGAATTGCTGCCTGAAG
........................................................................................................(((.((..(((...........))).)).)))..((((....))))....................................................................................................
....................................................................................................101................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189785SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
........................................................................................................................................................................................................GCACAGTCCTAGGTAAGT................................ 183.000.00-3.00--------------------------------------------------------
........................................................................................................................................................................................................GCACAGTCCTAGGTAAGTG............................... 192.000.00-2.00--------------------------------------------------------
........................................................................................................................................................................................................GCACAGTCCTAGGTAAG................................. 172.000.00-2.00--------------------------------------------------------
...................................................................................................GCAGAGCTACTAGGCTAGC.................................................................................................................................... 191.000.00-----------------------1.00----------------------------------
.........................................................................................................................................................................................................CACAGTCCTAGGTAATGT............................... 181.000.00-1.00--------------------------------------------------------
.........CCTGAGTTTATTGGAACAT.............................................................................................................................................................................................................................. 191.000.00------------1.00---------------------------------------------
........................................................................................................................................................................................................GCACAGTCCTAGGTAAGTGG.............................. 201.000.00-1.00--------------------------------------------------------
....................................................................................................................................................................................................................................AACAATGAATTGCTGTGA.... 181.000.00---------------------------1.00------------------------------
........................................................................................................................................................................................................GCACAGTCCTAGGTAAGTGA.............................. 201.000.00-1.00--------------------------------------------------------
.......................................................................................................................................................................................................AGCACAGTCCTAGGTAAT................................. 181.000.00-1.00--------------------------------------------------------
.........................................................................................................................................................................................................CACAGTCCTAGGTAAGCG............................... 181.000.00-1.00--------------------------------------------------------
.....................................ATTCGGATCACAGGTGATTGG................................................................................................................................................................................................ 211.000.00---------------------------------------1.00------------------
...................................................TGAGAGAGAATATTGTTT..................................................................................................................................................................................... 181.000.00-----------1.00----------------------------------------------
............................................................................................................................CCCGCTTCTCACCCC............................................................................................................... 1560.170.17---------0.17------------------------------------------------