ID: uc002zio.1_intron_3_0_chr21_47662846_r.3p
GENE: MCM3AP(3)
chr21:47662796-47663045-


(4)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(6)
CELL-LINE 		(5)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
UTERUS

Sense strand
AACCCAAGTGTGGAAGTCACATAATTGTGTGACTTTAATCAAAGGTCTTGCACTTAAATCAGTGAATTTAAGCACATGCCACCTGTCGCTGTTTAAATATTATTTGTACCTGTTTTTGTTTTTTTGTGTGTGTTTTTTTTTTTTTTGAGACAGGGTTGGCCAGGCTGGCCTCTTTATCTGTTTTTGTATTGTTTTCTCAGAGGCGCTGAGTGAAGATGGTCAGATATGTGTGTATTTTTTTAAAAACGAT
..................................................................................................................................((((((..........)))))).(((..((...))..)))................................................................................
...................................................................................................................116..........................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCCTCG.............................................................................24110.002.008.002.00--------------------
....................................................................................................................................................................................................................AAGATGGTCAGATATGTGTG..................2014.004.00---2.00-----1.00----1.00-------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCCTCGAG...........................................................................2613.002.002.00-1.00-------------------
..............................................................................................................................TGTGTGTTTTTTTTTTTTTGTTG.....................................................................................................233.000.003.00---------------------
...........................................................................................................................................................................CTTTATCTGTTTTTGTATTGTTTTCTCAG..................................................2913.003.00------3.00---------------
..............................................................................................................................TGTGTGTTTTTTTTTTTTTTCTTG....................................................................................................242.000.002.00---------------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCCTC..............................................................................2312.002.002.00---------------------
.......................................................................................................................................................................................................GAGGCGCTGAGTGAAGATG................................1912.002.00----1.00---1.00-------------
........................................................................................................................TTTTTGTGTGTGTTTTTTTTTTTTC.........................................................................................................252.000.001.001.00--------------------
................................................................................................................................................................................................................AGTGAAGATGGTCAGATATGTGTG..................2412.002.00-----2.00----------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTGTTG.....................................................................................................251.000.001.00---------------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCCCCG.............................................................................241.000.001.00---------------------
.........................................................................................................................................................................................................GGCGCTGAGTGAAGATGGTCATA..........................231.000.00---1.00------------------
......................................................................................................................................................................................................AGAGGCGCTGAGTGAAGATT................................201.000.00-----------------1.00----
.............................................................................................................................GTGTGTGTTTTTTTTTTTTTTGGGCC...................................................................................................261.000.001.00---------------------
........................................................................................................................TTTTTGTGTGTGTTTTTTTTTTTTCTT.......................................................................................................271.000.001.00---------------------
........................................................................................................................................................................................................AGGCGCTGAGTGAAGATGGTCAGATACG......................281.000.00-1.00--------------------
............................................................................................................................................................................................................GCTGAGTGAAGATGGTCAG...........................1911.001.00-----1.00----------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCCGG..................................................................................191.000.001.00---------------------
.............................................................................................................................................................................................................CTGAGTGAAGATGGTCAGATATGCGTG..................271.000.00--1.00-------------------
.......................................................................................................................................................AGGGTTGGCCAGGCTGGCCTCG.............................................................................221.000.001.00---------------------
.........................................................................................................................................................................................................GGCGCTGAGTGAAGATGGTCAGA..........................2311.001.00---1.00------------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGGC................................................................................211.000.00-1.00--------------------
......................................................................................................................................................................................................AGAGGCGCTGAGTGAAGA..................................1811.001.00--------1.00-------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTGTTG......................................................................................................241.000.001.00---------------------
...................................................................................................................................................AGACAGGGTTGGCCAGGCTGGGG................................................................................231.000.00-1.00--------------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTCGAG.....................................................................................................251.000.00-1.00--------------------
...............................................................................................................................................................................................................GAGTGAAGATGGTCAGATATGTG....................2311.001.00-------------------1.00--
.....................................................................................................................................................................................................CAGAGGCGCTGAGTGAAGATGGTCA............................2511.001.00-----1.00----------------
...................................................................................................................................................AGACAGGGTTGGCCAGGCTGGCCTGA.............................................................................261.000.001.00---------------------
......................................................................................................................................................................................................AGAGGCGCTGAGTGAAGATGGTC.............................2311.001.00------------1.00---------
..............................................................................................................................TGTGTGTTTTTTTTTTTTTTCAGT....................................................................................................241.000.001.00---------------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTTGGAG....................................................................................................261.000.00-1.00--------------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTTCAG.....................................................................................................251.000.001.00---------------------
.......................................................................................................................TTTTTTGTGTGTGTTTTTTTTTTTTCC........................................................................................................271.000.001.00---------------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCCTCGAGC..........................................................................2711.002.001.00---------------------
......................................................................................................................................................CAGGGTTGGCCAGGCCGG..................................................................................181.000.001.00---------------------
...........................................................................................................ACCTGTTTTTGTTTTTTTGGC..........................................................................................................................211.000.001.00---------------------
..........................................................................................................................TTTGTGTGTGTTTTTTTTTTTCTG........................................................................................................241.000.00-1.00--------------------
.........................................................................................................................TTTTGTGTGTGTTTTTTTTTTTCCGG.......................................................................................................261.000.00-1.00--------------------
...........................................................................................................................................................................................................CGCTGAGTGAAGATGGTCAGA..........................2111.001.00----------------1.00-----
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGGCAG...............................................................................221.000.001.00---------------------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTCTTA.....................................................................................................251.000.00-1.00--------------------
........................................................................................................................................................................................................AGGCGCTGAGTGAAGATGGTTT............................221.000.00---1.00------------------
.........................................................................................................................TTTTGTGTGTGTTTTTTTTTTTCT.........................................................................................................241.000.001.00---------------------
.....................................................................................................................................................ACAGGGTTGGCCAGGCTGCTCG...............................................................................221.000.00-1.00--------------------
................................................................................................................................TGTGTTTTTTTTTTTTTTGCTC....................................................................................................221.000.00-1.00--------------------
......................................................................................................................................................................................................................GATGGTCAGATATGTGTGTA................2011.001.00-----------1.00----------
........................................................................................................................................................................................................AGGCGCTGAGTGAAGATGGTCA............................2211.001.00-------1.00--------------
..........................................................................................GTTTAAATATTATTTAGGT.............................................................................................................................................191.000.00----------1.00-----------
............................................................................................................................TGTGTGTGTTTTTTTTTTTTTTCTAG....................................................................................................261.000.00-1.00--------------------
....................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTTCCGC.........................................................................................291.000.00-1.00--------------------
........................................................................................................................................................................................................AGGCGCTGAGTGAAGATG................................1811.001.00----1.00-----------------
....................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG............................................................................................261.000.00------------------1.00---
................................................................................................................................TGTGTTTTTTTTTTTTTTGATC....................................................................................................221.000.00----------1.00-----------
...........................................................................................................ACCTGTTTTTGTTTTTTTGTTATT.......................................................................................................................241.000.001.00---------------------
....................................................................................................................................................................................................................AAGATGGTCAGATATGTGTGT.................2111.001.00---------------1.00------
..................................................................................................................................................................................................................TGAAGATGGTCAGATATGT.....................1911.001.00--1.00-------------------
..............................................................................................................................TGTGTGTTTTTTTTTTTTTTCGAG....................................................................................................241.000.001.00---------------------
....................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG...........................................................................................271.000.001.00---------------------
...................................................................................................................................................AGACAGGGTTGGCCAGGCTGGCCTCG.............................................................................261.000.001.00---------------------
.......................................................................................................................................................................................................GAGGCGCTGAGTGAAGATGGTC.............................2211.001.00-------1.00--------------
...........................................................................................................................................................................................................CGCTGAGTGAAGATGGTCAG...........................2011.001.00---------1.00------------
......................................................................................................TTTGTACCTGTTTTTGTTTTTTTGTGTG........................................................................................................................2811.001.001.00---------------------
..............................................................................................................................TGTGTGTTTTTTTTTTTTTTGAGACAGGG...............................................................................................2911.001.00-1.00--------------------
.................................................................................................................................................................................................................GTGAAGATGGTCAGATTT.......................181.000.00---------------------1.00
.....................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC...........................................................................................261.000.00-1.00--------------------
...........................................................................................................................TTGTGTGTGTTTTTTTTTTTTGTTG......................................................................................................251.000.00-1.00--------------------
....................................................................................................................................................................................................TCAGAGGCGCTGAGTGAA....................................1811.001.00--------------------1.00-
..................................................................................................................................TGTTTTTTTTTTTTTTGAGACAGGGGC.............................................................................................271.000.001.00---------------------
................................................................................................................................TGTGTTTTTTTTTTTTTTGGCAG...................................................................................................231.000.001.00---------------------
...................................................................................................................................................................................................................GAAGATGGTCAGATATGTG....................1911.001.00-------------1.00--------
..............................................................................................................................................................................................................TGAGTGAAGATGGTCAGATT........................201.000.00----1.00-----------------
................................................................................................................................................................................................................AGTGAAGATGGTCAGATTTT......................201.000.00----1.00-----------------
.................................................................................................................................................................................................TTCTCAGAGGCGCTG..........................................1530.670.67--0.67-------------------
......................................................................................................................................TTTTTTTTTTTTGAGACAGGGTTGGC..........................................................................................2620.500.50--0.50-------------------
..........................................................................................................................................TTTTTTTTGAGACAGGGTTGG...........................................................................................2150.200.200.20---------------------
..........................................................................................................................TTTGTGTGTGTTTTTTTTTTTTTTG.......................................................................................................2550.200.200.20---------------------

Antisense strand
AACCCAAGTGTGGAAGTCACATAATTGTGTGACTTTAATCAAAGGTCTTGCACTTAAATCAGTGAATTTAAGCACATGCCACCTGTCGCTGTTTAAATATTATTTGTACCTGTTTTTGTTTTTTTGTGTGTGTTTTTTTTTTTTTTGAGACAGGGTTGGCCAGGCTGGCCTCTTTATCTGTTTTTGTATTGTTTTCTCAGAGGCGCTGAGTGAAGATGGTCAGATATGTGTGTATTTTTTTAAAAACGAT
..................................................................................................................................((((((..........)))))).(((..((...))..)))................................................................................
...................................................................................................................116..........................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
.........................................................................................TGTTTAAATATTATTTTTA.............................................................................................................................................. 191.000.00--1.00-------------------