ID: uc002zdz.2_intron_0_0_chr21_45432442_f.5p
GENE: (1)
chr21:45432392-45432641+


(5)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(15)
CELL-LINE 		(5)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
GCCGCTGCCGCCGGTGATCTACACCATGGAGAACAAGCCCATCGTCACCTGTGAGTGCCCGGAGGCGGGGAGGGCGCGGCGGTCGTTGGGCGGGCCCGGGCCCTGGCGTTATGCACCCGGCGCCCCCAGACCTTCAGCCCCCGGCGCGCTCCGGGCTGGGCCGCTTCCTGGAGGTGTGACCAGGGCTGCGGCTGAGGCGGGGCCCTCTGACTTTTCGGGGACGCCCTCTGACCTTCCCGCCGGGCGACCT
...............................................................((...((.((((((...((((((...((((((....))))..))...))).)))..))))))))...))......................................................................................................................
...............................................................64.....................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR343335SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532887(GSM532887)
G761N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
....................................................................GGAGGGCGCGGCGGTCGCTG..................................................................................................................................................................20122.002.0016.006.00----------------------------------------------------
.....................................................................GAGGGCGCGGCGGTCGCTG..................................................................................................................................................................1919.000.0018.001.00----------------------------------------------------
....................................................................GGAGGGCGCGGCGGTCGCTGC.................................................................................................................................................................21110.002.008.00---------------------1.00--------------1.00----------------
.....................................................................GAGGGCGCGGCGGTCGCTGC.................................................................................................................................................................205.000.005.00-----------------------------------------------------
......................................................................AGGGCGCGGCGGTCGCTGC.................................................................................................................................................................195.000.002.002.00----1.00-----------------------------------------------
................................................................................................................GCACCCGGCGCCCCCCCGG.......................................................................................................................194.000.00------1.00------1.00--1.00---------------------------1.00---------
.....................................................................GAGGGCGCGGCGGTCGCT...................................................................................................................................................................183.000.001.002.00----------------------------------------------------
....................................................................GGAGGGCGCGGCGGTCGC....................................................................................................................................................................1813.002.00----3.00-------------------------------------------------
....................................GCCCATCGTCACCTGG......................................................................................................................................................................................................163.000.00-----3.00------------------------------------------------
....................................................................GGAGGGCGCGGCGGTCG.....................................................................................................................................................................1712.002.00---2.00--------------------------------------------------
........................................................................................................................................GCCCCCGGCGCGCTCCC.................................................................................................171.000.00---------------------------1.00--------------------------
.........................................................................................................................................................................................CTGCGGCTGAGGCGGCGGG..............................................191.000.00---------1.00--------------------------------------------
....................................................................GGAGGGCGCGGCGGTC......................................................................................................................................................................1611.001.00------------1.00-----------------------------------------
............................................................................................................................................................................................CGGCTGAGGCGGGGCCGG............................................181.000.00--------------------------------------1.00---------------
....................................................................GGAGGGCGCGGCGGTCGCCG..................................................................................................................................................................2011.002.00-1.00----------------------------------------------------
......................................................................................................................................CAGCCCCCGGCGCGCAAGG.................................................................................................191.000.00----------------------------------------1.00-------------
...........................................................................GCGGCGGTCGTTGGGC...............................................................................................................................................................1611.001.00------------------1.00-----------------------------------
.....................................................................GAGGGCGCGGCGGTCGCGG..................................................................................................................................................................191.000.00-----------------------------------------1.00------------
................................................................................................................GCACCCGGCGCCCCCCC.........................................................................................................................171.000.00-------------1.00----------------------------------------
......................................................................................................CTGGCGTTATGCACCCTGG.................................................................................................................................191.000.00----------------------------1.00-------------------------
......................................................................AGGGCGCGGCGGTCGCTA..................................................................................................................................................................181.000.001.00-----------------------------------------------------
..........................................................CCGGAGGCGGGGAGGGGT..............................................................................................................................................................................181.000.00------------------------------------------------1.00-----
............................................................................CGGCGGTCGTTGGGCGGCGG..........................................................................................................................................................201.000.00--------1.00---------------------------------------------
...........................................................................................................................................................................................GCGGCTGAGGCGGGGAGGG............................................191.000.00--------------1.00---------------------------------------
.....................................................................................................................................TCAGCCCCCGGCGCGCTCCGG................................................................................................2111.001.00-----------------------1.00------------------------------
....................................................................GGAGGGCGCGGCGGTCGCCGC.................................................................................................................................................................2111.002.001.00-----------------------------------------------------
...............................................CCTGTGAGTGCCCGGAGGCGGGGAGGGC...............................................................................................................................................................................2811.001.00----------1.00-------------------------------------------
.................................................................................................................CACCCGGCGCCCCCACGT.......................................................................................................................181.000.00---------------------------------------1.00--------------
.........................................................CCCGGAGGCGGGGAGGGC...............................................................................................................................................................................1811.001.00---------------------------------------------1.00--------
.....................................................................GAGGGCGCGGCGGTCGG....................................................................................................................................................................171.000.001.00-----------------------------------------------------
....................................................................................GTTGGGCGGGCCCGGGGCC...................................................................................................................................................191.000.00---------1.00--------------------------------------------
...........................................................................................................................................................................................GCGGCTGAGGCGGGGATGG............................................191.000.00-------------------------------------------1.00----------
...................................................................GGGAGGGCGCGGCGGTCGCT...................................................................................................................................................................201.000.001.00-----------------------------------------------------
....................................................................GGAGGGCGCGGCGGTCGCTTC.................................................................................................................................................................2111.002.001.00-----------------------------------------------------
.............................................................................GGCGGTCGTTGGGCGGCG...........................................................................................................................................................181.000.00--------1.00---------------------------------------------
.....................................................................GAGGGCGCGGCGGTC......................................................................................................................................................................1511.001.00------1.00-----------------------------------------------
.....................................................................GAGGGCGCGGCGGTCGCA...................................................................................................................................................................181.000.00------------1.00-----------------------------------------
.....................................................................GAGGGCGCGGCGGTCTCT...................................................................................................................................................................1811.001.001.00-----------------------------------------------------
.......................................................................................................................................................................................GGCTGCGGCTGAGGCGCAA................................................191.000.00---------------1.00--------------------------------------
....................................................GAGTGCCCGGAGGCGGCGGC..................................................................................................................................................................................201.000.00--------------------------------1.00---------------------
..........................TGGAGAACAAGCCCATCGTC............................................................................................................................................................................................................2011.001.00-------------------------1.00----------------------------
......................................................................AGGGCGCGGCGGTCGCTG..................................................................................................................................................................181.000.00-1.00----------------------------------------------------
....................................................................GGAGGGCGCGGCGGTCGGCGA.................................................................................................................................................................2111.002.00---------------------1.00--------------------------------
................................................................................................................................................CGCGCTCCGGGCTGGA..........................................................................................161.000.00--1.00---------------------------------------------------
.........................................................................GCGCGGCGGTCGTTGCA................................................................................................................................................................171.000.00------------------------------------------1.00-----------
...........................................................................................................................................................................................................CCTCTGACTTTTCGGGGACGC..........................2111.001.00---------------1.00--------------------------------------
....................................................................GGAGGGCGCGGCGGTCGCGG..................................................................................................................................................................2011.002.001.00-----------------------------------------------------
......................................................................AGGGCGCGGCGGTCGCT...................................................................................................................................................................171.000.00--------------------1.00---------------------------------
....................................................................GGAGGGCGCGGCGGTCGGT...................................................................................................................................................................1911.002.00-----------------------------------------------1.00------
.....................................................................GAGGGCGCGGCGGTCGGT...................................................................................................................................................................181.000.001.00-----------------------------------------------------
....................................................................GGAGGGCGCGGCGGTATTC...................................................................................................................................................................1930.330.330.33-----------------------------------------------------
....................................................................GGAGGGCGCGGCGGT.......................................................................................................................................................................1530.330.33--------0.33---------------------------------------------

Antisense strand
GCCGCTGCCGCCGGTGATCTACACCATGGAGAACAAGCCCATCGTCACCTGTGAGTGCCCGGAGGCGGGGAGGGCGCGGCGGTCGTTGGGCGGGCCCGGGCCCTGGCGTTATGCACCCGGCGCCCCCAGACCTTCAGCCCCCGGCGCGCTCCGGGCTGGGCCGCTTCCTGGAGGTGTGACCAGGGCTGCGGCTGAGGCGGGGCCCTCTGACTTTTCGGGGACGCCCTCTGACCTTCCCGCCGGGCGACCT
...............................................................((...((.((((((...((((((...((((((....))))..))...))).)))..))))))))...))......................................................................................................................
...............................................................64.....................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR343335SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532887(GSM532887)
G761N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
......................................................................................TGGGCGGGCCCGGGCGGCG................................................................................................................................................. 195.000.00--4.00-------------1.00-------------------------------------
............................................................................................................................................................CCTCCAGGAAGCGGCCCA............................................................................ 1812.002.00-------2.00----------------------------------------------
.................................................................................................................................CGCGCCGGGGGCTGAAGGT...................................................................................................... 1911.001.00---------------------------------1.00--------------------
..........................................................CCGGAGGCGGGGAGGGA............................................................................................................................................................................... 171.000.00-----------------------------------1.00------------------
.......................................................................................................................CTGAAGGTCTGGGGGCGC................................................................................................................. 1811.001.00-------------------------------1.00----------------------
..........................................................CCGGAGGCGGGGAGGAGC.............................................................................................................................................................................. 181.000.00-----------------1.00------------------------------------
..................TTGTTCTCCATGGTGTAG...................................................................................................................................................................................................................... 1811.001.00------------------------------------1.00-----------------
........................................................................................................................CGCCCCCAGACCTTCATTTT.............................................................................................................. 201.000.00-------------------1.00----------------------------------
..........................................................................................................................CCCGGAGCGCGCCGGGGGCTGAAGGTCTGGGGG............................................................................................... 3311.001.00-----------1.00------------------------------------------
.............................................................................................................................GCCCGGAGCGCGCCGGGGGCTGAAGGTCTGG.............................................................................................. 3111.001.00-----------1.00------------------------------------------
............................................................................................................................GCCGGGGGCTGAAGGTCTGGG......................................................................................................... 2111.001.00---1.00--------------------------------------------------
.....................................................................................................................GCTGAAGGTCTGGGGGCGCCG................................................................................................................ 2111.001.00------------------------1.00-----------------------------
....................................................................................................................................................CTCCGGGCTGGGCCGGCC.................................................................................... 181.000.00----------------------------------------------1.00-------
.................................................................................................................................GCGCCGGGGGCTGAAGGT....................................................................................................... 1811.001.00--------------1.00---------------------------------------
..................................................................................................................................................GCGGCCCAGCCCGGAGCG...................................................................................... 1811.001.00----------------------------------1.00-------------------
........................................................................GGCGCGGCGGTCGTTGG................................................................................................................................................................. 171.000.00-----------------1.00------------------------------------
.................................................................................................................................CGGAGCGCGCCGGGGGCTGAAGGT................................................................................................. 2411.001.00---1.00--------------------------------------------------
..........................................................................GCCCAACGACCGCCGCG............................................................................................................................................................... 1711.001.00----------1.00-------------------------------------------
........................................................CCGCCGCGCCCTCCCCGCCTCCGGGC........................................................................................................................................................................ 2611.001.00-----------------------------1.00------------------------
...................................................................................................................GAAGGTCTGGGGGCGCCGGG................................................................................................................... 2011.001.00---1.00--------------------------------------------------
..................................................................GGGGAGGGCGCGGCGGCGGA.................................................................................................................................................................... 201.000.00--------------------------1.00---------------------------
........................................................................................................................GCTGAAGGTCTGGGGGCG................................................................................................................ 1811.001.00------------------------------1.00-----------------------
........................................................................................GGCGGGCCCGGGCCCGGC................................................................................................................................................ 181.000.00--1.00---------------------------------------------------
..................................................................................................................................GCGCGCCGGGGGCTGAAGG..................................................................................................... 1920.500.50--------------------------------------------------0.50---
....................................................................................................................................GCGCCGGGGGCTGAA....................................................................................................... 1520.500.50---------------------------------------------------0.50--
...................................................................................................................................CGCCGGGGGCTGAAG........................................................................................................ 1520.500.50-------------------------------------------------0.50----
.............................................................................................ACGCCAGGGCCCGGGC............................................................................................................................................. 1630.330.33-------0.33----------------------------------------------
.........................................................................................................................CTGAAGGTCTGGGGGC................................................................................................................. 1630.330.33----------------------------------------------------0.33-
........................................................CTCCCCGCCTCCGGGC.................................................................................................................................................................................. 1630.330.33------------------0.33-----------------------------------
......................................................................................................................................................................................................................................GCCCGGCGGGAAGGT..... 1540.250.25-----------------------------------------------------0.25