ID: uc002zdm.3_intron_0_0_chr21_45139263_f.5p
GENE: (1)
chr21:45139213-45139462+


(11)
B-CELL
(1)
BRAIN
(4)
BREAST
(19)
CELL-LINE
(10)
CERVIX
(1)
HEART
(2)
HELA
(6)
LIVER
(3)
OTHER
(1)
RRP40.ip
(11)
SKIN

Sense strand
ACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGGTACGCATCCGCCCGCAGCCCGGGCTTACGTAACCCGAGCCCGTGACCTTGGCGGGGCTGCCCGAGACGAGCCTCAGTTCCCCGAGGGAGGCTCGGGAGCTGCGGGCAGAGCCTGGCGCGGGCGCCCTGGAGGCAGGCGCGGGATGAGCCTCCCGCTCTGCTTGGCTTGCGGGGGCGGAAGCGGAGGGCTGAGCGCTCTG
...........................................................................................................................................((((((....(((((.((....((.((((....))))..))..))...)))))..))))))..................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040006(GSM532891)
G601N. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189784
..........................................................................................................................................AGGCTCGGGAGCTGCGGG..............................................................................................1817.007.00--1.00---1.00---1.00-1.00---------------1.00------------1.00-------------1.00-----------------
......................CAACCGGGCGGCCACACCA.................................................................................................................................................................................................................195.000.00-3.00------------1.00-----------------------1.00----------------------------------
...............................................................................................................................................CGGGAGCTGCGGGCAGAG.........................................................................................1814.004.00-----3.00-----------------------1.00-------------------------------------------
..........................................................................................................................................AGGCTCGGGAGCTGCGG...............................................................................................1713.003.00-------2.00----------------------------1.00------------------------------------
.............................................................................................................................................CTCGGGAGCTGCGGGCAG...........................................................................................1813.003.00---------------------------------1.00------------------------1.00---------1.00----
.................................................................................................................................................................................................................GCTTGGCTTGCGGGGGA........................172.000.00------------------1.00--------------------------------------1.00---------------
.......................AACCGGGCGGCCACGCCA.................................................................................................................................................................................................................182.000.00-1.00-----------------------------------------------------------------1.00-----
...............................................................................................................................................CGGGAGCTGCGGGCAGAGCCTGG....................................................................................2312.002.00--2.00----------------------------------------------------------------------
.................................................................................................................................................................................................................................CGGAAGCGGAGGGCTGAG.......1812.002.00--------1.00------------------------------------------1.00---------------------
..........................................................................................................................................AGGCTCGGGAGCTGCGGGCAG...........................................................................................2112.002.00-----------2.00-------------------------------------------------------------
................................................................................................................................................................................................................................GCGGAAGCGGAGGGCTGAGC......2012.002.00---2.00---------------------------------------------------------------------
..................................................................................................................................................................................GGAGGCAGGCGCGGGAT.......................................................1712.002.00----2.00--------------------------------------------------------------------
................................................................................................................................................GGGAGCTGCGGGCAGAGCCTGG....................................................................................2212.002.00------2.00------------------------------------------------------------------
.............................................................................................................................................................................................................................GGGGCGGAAGCGGAGGACGA.........201.000.00-------------1.00-----------------------------------------------------------
............................................................................................................................................GCTCGGGAGCTGCGGGCAGAG.........................................................................................2111.001.00------------------------1.00------------------------------------------------
..........................................................................................................................................AGGCTCGGGAGCTGCGGGCAGAGCCTGGCGCGG...............................................................................3311.001.00-------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................CAGGCGCGGGATGAGCCTC................................................1911.001.00------------------------------------------------------------------1.00------
...............................................................................................................................................CGGGAGCTGCGGGCAGAGCCTGGCG..................................................................................2511.001.00-------1.00-----------------------------------------------------------------
...............................................................................................................................................CGGGAGCTGCGGGCAGGC.........................................................................................181.000.00-----------------------------------------------------1.00-------------------
.......................AACCGGGCGGCCACGCCC.................................................................................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------
....CATCCGCGGCTACGTGGGC...................................................................................................................................................................................................................................1911.001.00----------1.00--------------------------------------------------------------
.......................................................................................................................................................GCGGGCAGAGCCTGGCGCGGG..............................................................................2111.001.00-----------------------------------------------1.00-------------------------
................................................................................................................................................GGGAGCTGCGGGCAGAGCCT......................................................................................2011.001.00------------1.00------------------------------------------------------------
.............CTACGTGGGCAACCGGGCGGCC.......................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------1.00-----------
...................................................................................................................................................AGCTGCGGGCAGAGCCTGGCGCGG...............................................................................2411.001.00------------------------------------------------1.00------------------------
........CGCGGCTACGTGGGCAACCG..............................................................................................................................................................................................................................2011.001.00---------------------1.00---------------------------------------------------
.................................................................................................................................................................................TGGAGGCAGGCGCGGGA........................................................1711.001.00--------------------------1.00----------------------------------------------
..........................................................................................................................................................................................GCGCGGGATGAGCCTCC...............................................1711.001.00---------------------------------------------1.00---------------------------
.............................................................................................................................................CTCGGGAGCTGCGGGCAGAGCCTGGCGCGGG..............................................................................3111.001.00-----------------------------------------------------------------1.00-------
....................................................................................................................................CGAGGGAGGCTCGGGT......................................................................................................161.000.00----------------------------------1.00--------------------------------------
........CGCGGCTACGTGGGCAACC...............................................................................................................................................................................................................................1911.001.00--------------------------------------------------------1.00----------------
.................................................................................................................................................GGAGCTGCGGGCAGAGCC.......................................................................................1811.001.00-----------------------------------1.00-------------------------------------
................................................................................................................................................................................................................................GCGGAAGCGGAGGGCTGAGCG.....2111.001.00---1.00---------------------------------------------------------------------
..................................................................................................................................CCCGAGGGAGGCTCGGGAGCTGCGGGCAGA..........................................................................................3011.001.00-----------------------------------------------------------1.00-------------
...............................................................................................................................................CGGGAGCTGCGGGCAGAGCCT......................................................................................2111.001.00--1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................GCGGAGGGCTGAGCGGCG..181.000.00----------------------------------------------------------------1.00--------
.......................................................................................................................................GGGAGGCTCGGGAGCTGC.................................................................................................1811.001.00-----------------1.00-------------------------------------------------------
.......................AACCGGGCGGCCACGCGAA................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------1.00--
...................................................................................................................................................................TGGCGCGGGCGCCCTGGAG....................................................................1911.001.00----------------1.00--------------------------------------------------------
..........................................................................................................................................AGGCTCGGGAGCTGCG................................................................................................1611.001.00----------------------------------------------------1.00--------------------
..........................CGGGCGGCCACGTTCCC...............................................................................................................................................................................................................1711.001.00----1.00--------------------------------------------------------------------
..............TACGTGGGCAACCGGGCGG.........................................................................................................................................................................................................................1911.001.00---------1.00---------------------------------------------------------------
....................................................................................................................................................................................................................................AAGCGGAGGGCTGAGCGCT...1911.001.00-------------------------------------------1.00-----------------------------
.............................................................................................................................................CTCGGGAGCTGCGGGCA............................................................................................1711.001.00--------------------------------------------------1.00----------------------
........CGCGGCTACGTGGGCGGT................................................................................................................................................................................................................................181.000.00----------------------------------------------1.00--------------------------
......................................................................................................................................AGGGAGGCTCGGGAGCTGCGGGCAGAG.........................................................................................2711.001.00----------------------------------------1.00--------------------------------
........CGCGGCTACGTGGGCAACCGG.............................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------1.00---
................................................................................................................................................GGGAGCTGCGGGCAGAGCCTGGCGCGGG..............................................................................2811.001.00-------------------------1.00-----------------------------------------------
..................................................................................................................................................................................................................................GGAAGCGGAGGGCTGCCA......181.000.00--------------------1.00----------------------------------------------------
........CGCGGCTACGTGGGCAACCGGGCGG.........................................................................................................................................................................................................................2511.001.00-------------------------------------------------1.00-----------------------
.........GCGGCTACGTGGGCAACCGG.............................................................................................................................................................................................................................2011.001.00---------------------------1.00---------------------------------------------
......................CAACCGGGCGGCCACACTA.................................................................................................................................................................................................................191.000.00--------------------------------------------1.00----------------------------
..........CGGCTACGTGGGCAACCGGGC...........................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------1.00----------
..................................................................................................................................CCCGAGGGAGGCTCGGGAGC....................................................................................................2011.001.00------------------------------------------------------1.00------------------
..GTCATCCGCGGCTACGTGGG....................................................................................................................................................................................................................................2011.001.00---------------1.00---------------------------------------------------------
................................................AGGTACGCATCCGCCCGC........................................................................................................................................................................................1811.001.00---------------1.00---------------------------------------------------------
................................................................................................................................................................................................................................GCGGAAGCGGAGGGCTGAG.......1911.001.00-----------------------------------------------------------------------1.00-
.............................................................................................................................................CTCGGGAGCTGCGGGCAGAG.........................................................................................2011.001.00--1.00----------------------------------------------------------------------
.....................GCAACCGGGCGGCCACACCC.................................................................................................................................................................................................................201.000.00-------------1.00-----------------------------------------------------------
..........CGGCTACGTGGGCAACCGGGCG..........................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------1.00---------
.........................................................................................................................................GAGGCTCGGGAGCTGCGGGC.............................................................................................2011.001.00--------1.00----------------------------------------------------------------
.......................................................................................................................................GGGAGGCTCGGGAGCTGCGGGC.............................................................................................2211.001.00-----------------------1.00-------------------------------------------------
.............CTACGTGGGCAACCGGGC...........................................................................................................................................................................................................................1811.001.00--------------1.00----------------------------------------------------------
..................................................................................................................................................GAGCTGCGGGCAGAGCAT......................................................................................181.000.00----------------------1.00--------------------------------------------------
.....................GCAACCGGGCGGCCACACC..................................................................................................................................................................................................................191.000.00-------------------------------------1.00-----------------------------------
................................................................................................................................................................................................................................GCGGAAGCGGAGGGC...........1520.500.50------------------------------------------------------------------------0.50
........................................................................................GCCCGTGACCTTGGC...................................................................................................................................................1560.170.17----------------0.17--------------------------------------------------------

Antisense strand
ACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGGTACGCATCCGCCCGCAGCCCGGGCTTACGTAACCCGAGCCCGTGACCTTGGCGGGGCTGCCCGAGACGAGCCTCAGTTCCCCGAGGGAGGCTCGGGAGCTGCGGGCAGAGCCTGGCGCGGGCGCCCTGGAGGCAGGCGCGGGATGAGCCTCCCGCTCTGCTTGGCTTGCGGGGGCGGAAGCGGAGGGCTGAGCGCTCTG
...........................................................................................................................................((((((....(((((.((....((.((((....))))..))..))...)))))..))))))..................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040006(GSM532891)
G601N. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189784
..............................................................CCGCAGCCCGGGCTTCTA.......................................................................................................................................................................... 185.000.005.00------------------------------------------------------------------------
.........................................................................................CGCCAAGGTCACGGG.................................................................................................................................................. 1512.002.00-------------------------------1.00-------1.00---------------------------------
...........................................................................................................................................................................................................................CGGGGGCGGAAGCGGGGGC............ 191.000.00---------1.00---------------------------------------------------------------
.......................................................CATCCGCCCGCAGCCGAT................................................................................................................................................................................. 181.000.00------------------------------------------1.00------------------------------
......................................................GCCCGGGCTGCGGGCGGATGC............................................................................................................................................................................... 2111.001.00--------------------------------1.00----------------------------------------
............................................CTGCAGGTACGCATCTAC............................................................................................................................................................................................ 181.000.00------------------------------------------------------------1.00------------
................................................................................................................................................................GCCTGGCGCGGGCGCGGAT....................................................................... 191.000.00------------------------------1.00------------------------------------------