ID: uc002zdf.2_intron_12_0_chr21_44846073_r.3p
GENE: SIK1(1)
chr21:44846023-44846272-


(1)
AGO1.ip 		(5)
AGO2.ip 		(3)
B-CELL 		(5)
BRAIN 		(13)
BREAST 		(18)
CELL-LINE 		(10)
CERVIX 		(5)
HEART 		(9)
HELA 		(3)
LIVER 		(1)
OTHER 		(34)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CGGGGGTCCGGGTGGAGCGGGCGGCGGGGGCGGGTCCACACCTCCCACGGGGCTGGAGGGGCCCGTGGATAGAGTGGGGGCGACAGGCGTGGGAGCAGGTCCCTGCGTCCCGTGGGGACTGGGGGCTCCGCGGGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGGTGCGCGCGGAGCCATGGTTATCATGTCGGAGTTCAGCGCGGACCCCGCG
................................................................................................................................................(((.......))).((((((.(((....((((.....))))...))).))))))....................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040041(GSM532926)
G612T. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		GSM532877(GSM532877)
G691N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGCC........................................................30187.0087.0087.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................CGCTGGTGGGCTCTGAGCTCTGTGCGGC.........................................................28128.0028.0027.00-------------1.00----------------------------------------------------------------------------------------
......................................................................................................................................CACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAG..................................................66117.0017.00-15.002.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCA...................................................64114.0014.00-10.004.00----------------------------------------------------------------------------------------------------
......................................................................................................................................CACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGC....................................................64110.0010.00-10.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................................GCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCA...................................................6619.009.00-9.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAGT.................................................2319.002.00----------2.00---------1.00-------1.001.00---------1.001.00-----------------------------1.00--------------1.00-----------------
............................................................................................................................................................................................................................ATCATGTCGGAGTTCAGCGCGG........2216.006.00---------3.00--3.00------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGCGGGCGGCGGGGCGGG..................................................................................195.000.00--------1.00----------------2.00------------------------------------1.00--1.00-------------------------------------
...................................................................................................................................................................GGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCC.......................................................3215.005.005.00------------------------------------------------------------------------------------------------------
....................................................................................................................................GGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGC....................................................6614.004.00-4.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCAGT.................................................2414.002.00-------2.00-------------------1.00----------------------------1.00----------------------------------------------
....................................................................................................................................GGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAG..................................................6814.004.00--4.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGCGGGCGGCGGGGCGG...................................................................................183.000.00------------------1.00-----------------------1.00---------------------------------------1.00--------------------
........................................................................................................................................CGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAG..................................................6413.003.00-1.00-----------2.00-----------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGG..........................................................2813.003.003.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAGTT................................................2413.002.00-1.00-----------------------------------------------------1.00----1.00------------------------------------------
.......................................................................................................................................................................CTGGTGGGCTCTGAGCTCTG...............................................................2013.003.00--------1.00-------------1.00----------------------------------------------------------------1.00---------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAG..................................................6513.003.00--2.00----------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................GCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGT.................................................682.000.00-2.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGA.................................................6612.003.00--2.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCC.......................................................1712.002.00--------------------------2.00----------------------------------------------------------------------------
........................................................................................................................................................................TGGTGGGCTCTGAGCTCTG...............................................................1912.002.00---------------------1.00-----------------------------------1.00---------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAGA.................................................2312.002.00-------1.00--------------------------------------------------1.00--------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAG..................................................2212.002.00-----------------------1.00---------------------1.00---------------------------------------------------------
................................................................................................................TGGGGACTGGGGGCTCCGCGGGCACGGAT.............................................................................................................2912.002.00-----------2.00-------------------------------------------------------------------------------------------
......................................................................................................................................CACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCA...................................................6512.002.00--2.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCAG..................................................2312.002.00-------1.00----------------------------------------------------------------------------1.00------------------
.....................CGGCGGGGGCGGGTCTGG...................................................................................................................................................................................................................182.000.00---1.001.00--------------------------------------------------------------------------------------------------
............................................................................................................................................TGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGT.................................................612.000.00-2.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCGGGGGCGCTGGTGGGCTC........................................................................2012.002.00-----------------------------------------------------------1.00-1.00-----------------------------------------
...............................................................................................................GTGGGGACTGGGGGCTCCGCGGGCACGGATGG...........................................................................................................3212.002.00------2.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAA..................................................2211.001.00-----------1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGGTTATCATGTCGGAGTTCAGCGC..........2511.001.00-------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................GGCGCTGGTGGGCTCTGAGCTCTGTGCGG..........................................................2911.001.001.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................ATGGTTATCATGTCGGAGTT................2011.001.00----------------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGTTT..................................................221.000.00----------------------------------------------1.00--------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGCCAA......................................................3211.0087.001.00------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCAGTA................................................2511.002.00---------------------------------1.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................CATGTCGGAGTTCAGCGC..........1811.001.00------1.00------------------------------------------------------------------------------------------------
....................GCGGCGGGGGCGGGTCTCTT..................................................................................................................................................................................................................201.000.00-----------------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGG...........................................................................................2411.001.00-----------------------------------------------1.00-------------------------------------------------------
........................................................................................................................................................................................................................GGTTATCATGTCGGAGTTCAGCGCGGACC.....2911.001.00----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GCGCGCGGAGCCATGAG...............................171.000.00---------------------------------------------------------------------------------1.00---------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCCGA.................................................241.000.00----------------------------------------------------1.00--------------------------------------------------
............................................................................................................................................................................................................................ATCATGTCGGAGTTCAGCGCGGA.......2311.001.00------------------------1.00------------------------------------------------------------------------------
...............................................................................................................................................AGCCGACCGCGGGCGCCA.........................................................................................181.000.00---------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................................................................TCATGTCGGAGTTCAGCGCGGA.......2211.001.00------------------------------------------------------------------------------1.00------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTGGAC.............................................................................191.000.00----1.00--------------------------------------------------------------------------------------------------
.............GGAGCGGGCGGCGGGTTC...........................................................................................................................................................................................................................181.000.00------------------------------------------------1.00------------------------------------------------------
................................................................GTGGATAGAGTGGGGGCGACAGGCGTGG..............................................................................................................................................................2811.001.00--------------------------------1.00----------------------------------------------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGAC................................................6711.003.00--1.00----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CTCTGAGCTCTGTGCGGC.........................................................1811.001.00---------------------------------------------------1.00---------------------------------------------------
.....................................................................................................................................................................CGCTGGTGGGCTCTGAGCTCTGTGCGGA.........................................................281.000.001.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGGTTATCATGTCGGAG..................1711.001.00---------------------------------------------------------------------------1.00---------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTGGGCGG...........................................................................211.000.00----1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................CGCTGGTGGGCTCTGAGCTCTGTGCGGCA........................................................2911.0028.001.00------------------------------------------------------------------------------------------------------
.....................CGGCGGGGGCGGGTCTG....................................................................................................................................................................................................................171.000.00----1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGC.........................................................2911.001.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGCT........................................................3011.001.001.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TGGGCTCTGAGCTCTGTGCGGCCCCGC....................................................2711.001.00-------------------1.00-----------------------------------------------------------------------------------
........................................................................AGTGGGGGCGACAGGCGT................................................................................................................................................................1811.001.00--------------------------------------------1.00----------------------------------------------------------
.....................CGGCGGGGGCGGGTCCGGAC.................................................................................................................................................................................................................201.000.00----1.00--------------------------------------------------------------------------------------------------
..................................................................................................GTCCCTGCGTCCCGTGGGGACTGGGG..............................................................................................................................2611.001.00-------------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................................GCACGGATGGAGCCGACCGC.................................................................................................2011.001.00----------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................GGCGGGGGCGCTGGTAGTG..........................................................................191.000.00------------------------------------1.00------------------------------------------------------------------
................................................................GTGGATAGAGTGGGGGCGACAGGCG.................................................................................................................................................................2511.001.00-----------------------------------------------------------------------1.00-------------------------------
..............................................ACGGGGCTGGAGGGGCGG..........................................................................................................................................................................................181.000.00---1.00---------------------------------------------------------------------------------------------------
......................GGCGGGGGCGGGTCCAGGGT................................................................................................................................................................................................................201.000.00----------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCAGTTT...............................................2611.002.00-------------------------------------------------------------------1.00-----------------------------------
........................................................................................................................................................................................CTGTGCGGCCCCGCAGG.................................................1711.001.00---------------------1.00---------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCAAGA....................................................201.000.00------------------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCGCAT..................................................231.000.00------------------------------------------------------------------------1.00------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGAT................................................6711.003.00--1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................GGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCC.......................................................3411.001.00--------------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................GTGCGCGCGGAGCCATGGTTATC...........................2311.001.00-----------------------------------------1.00-------------------------------------------------------------
...................................................................................................................................GGGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAG..................................................6911.001.00--1.00----------------------------------------------------------------------------------------------------
...........GTGGAGCGGGCGGCGGC..............................................................................................................................................................................................................................171.000.00-------------------------------1.00-----------------------------------------------------------------------
.............GGAGCGGGCGGCGGGGCGG..........................................................................................................................................................................................................................191.000.00----------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................................GCTGGTGGGCTCTGAGCTCTGTGCGGCC........................................................2811.001.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................ACCGCGGGCGGCGGGCGT....................................................................................181.000.00-----------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................CGGGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCA...................................................6911.001.00-1.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................................................TGGTGGGCTCTGAGCTC.................................................................1711.001.00------------------------------------------------------------------1.00------------------------------------
.......................................................................................................................................................................................TCTGTGCGGCCCCGCAG..................................................1721.001.00------------------------------------------------------------------------------------------0.50-0.50----------
......................................................................................................................................................................GCTGGTGGGCTCTGAGCTCTGTGCGGC.........................................................2711.001.00--------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................ACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGA.................................................531.000.00--1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................TCCGCGGGCACGGATGGAGC........................................................................................................2011.001.00-----------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................................................GGCGCTGGTGGGCTCTGAGCTCTGTGCGGCGC.......................................................321.000.001.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................GGTGGGCTCTGAGCTCTGTGCGGC.........................................................2411.001.00-------------------------------------------1.00-----------------------------------------------------------
..................................................................................................................GGGACTGGGGGCTCCGCGGGCACGGATGG...........................................................................................................2911.001.00---------------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................TGGTGGGCTCTGAGCTCTGTGC............................................................2211.001.00------1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTAC...............................................................................171.000.00------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................GCTGGTGGGCTCTGAGCTCTGTGCGGCCCCG.....................................................3111.001.00-----------------------------------------------------------------------------------------1.00-------------
................GCGGGCGGCGGGGGCGGGGG......................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------1.00----------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAGTTA...............................................2511.002.00--------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................GCTGGTGGGCTCTGAGCTCTGTGCGG..........................................................2611.001.00--------------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................ACGGATGGAGCCGACCGC.................................................................................................1811.001.00----------------1.00--------------------------------------------------------------------------------------
.......CCGGGTGGAGCGGGCGG..................................................................................................................................................................................................................................1711.001.00-------------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................................................TGGGCTCTGAGCTCTGTGCGGCCCCGCAGA.................................................301.000.00-----------------1.00-------------------------------------------------------------------------------------
...................GGCGGCGGGGGCGGGTCTGG...................................................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------1.00-------------------------
.........................................................................................................CGTCCCGTGGGGACTGGGG..............................................................................................................................1911.001.00---------------1.00---------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGTTATCATGTCGGAGTTCAGCGCGGA.......2711.001.00----1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................................................TGGTGGGCTCTGAGCTCTGTGCGGCCC.......................................................2711.001.00-------------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................CTGGTGGGCTCTGAGCTCTGTGCGGCCCCGC....................................................3111.001.00-------------------------------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCAT..................................................2211.001.00-----------------------------------------------------1.00-------------------------------------------------
...................GGCGGCGGGGGCGGGTTTGG...................................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------1.00--------------------------
................................................................................................................................................................................................CCCCGCAGGTGCGCGCCGGC......................................201.000.00--------------------------------------1.00----------------------------------------------------------------
.....................................................................................................................................................................CGCTGGTGGGCTCTGAGCTCTGTGCGGCCC.......................................................3011.001.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGCCA.......................................................3111.0087.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCTGGTGGGCTCTGAGCTCTGTGCGGT.........................................................2911.003.001.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGAGCTCTGTGCGGCCCCGCA...................................................2111.001.00------------------------------------------------------1.00------------------------------------------------
.......................................................................GAGTGGGGGCGACAGATGT................................................................................................................................................................191.000.00--------------------------------------------------1.00----------------------------------------------------
........CGGGTGGAGCGGGCG...................................................................................................................................................................................................................................1521.001.00---------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGCTCTGTGCGGCCCCG.....................................................2011.001.00------------------1.00------------------------------------------------------------------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTGGAAGC...........................................................................211.000.00----1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................GGGCTCTGAGCTCTGTGCGGC.........................................................2111.001.00--------------------------------------------------------------------------------------1.00----------------
......................................................................................................................................CACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCG.....................................................6311.001.00----------------------------------------------------------------------------------------1.00--------------
...GGGTCCGGGTGGAGC........................................................................................................................................................................................................................................1580.620.62--------0.12-------------------0.12---------------------------------------------------------------------0.120.12-0.12-
...................................................................................................................................................................GGCGCTGGTGGGCTCTG......................................................................1720.500.50---------------------------------------------------------------------------------------------0.50---------
.........................................................................................................................................................GGGCGGCGGGGGCGCTGG...............................................................................1820.500.50----0.50--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................GTGGGCTCTGAGCTCTG...............................................................1740.500.50-----------------------------0.25----------------------------------------------------------------0.25--------
...GGGTCCGGGTGGAGCCG......................................................................................................................................................................................................................................1780.380.62----------------------------0.12--0.12----------------------------------------------------------0.12------------
...GGGTCCGGGTGGAGCCGC.....................................................................................................................................................................................................................................1880.380.62----------------------------0.12------------------------------------------------------------------0.25-------
...................................CCACACCTCCCACGG........................................................................................................................................................................................................1590.220.22---------------0.22---------------------------------------------------------------------------------------
...............................................................................................................................................................CGGGGGCGCTGGTGG............................................................................1550.200.20------------------------------------------------------------------------------------------------0.20------
.....................................................................................................................................................CCGCGGGCGGCGGGGGC....................................................................................1760.170.17-------------------------------------------------------------------------------------------------0.17-----
..........................................................................................................................................................GGCGGCGGGGGCGCTGCAC.............................................................................1970.140.14------------------------------0.14------------------------------------------------------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTG................................................................................1670.140.14----------------------------------------------------------------------------------------------0.14--------
...GGGTCCGGGTGGAGCCGCC....................................................................................................................................................................................................................................1980.120.62----------------------------------------------------------------------------------------------------0.12--
.................CGGGCGGCGGGGGCGGGCGG.....................................................................................................................................................................................................................2090.110.11-----0.11-------------------------------------------------------------------------------------------------
.................CGGGCGGCGGGGGCGGG........................................................................................................................................................................................................................1790.110.11------------------------------------------------------------------------------------------------------0.11
...................................CCACACCTCCCACGGCG......................................................................................................................................................................................................1790.110.22---------------0.11---------------------------------------------------------------------------------------

Antisense strand
CGGGGGTCCGGGTGGAGCGGGCGGCGGGGGCGGGTCCACACCTCCCACGGGGCTGGAGGGGCCCGTGGATAGAGTGGGGGCGACAGGCGTGGGAGCAGGTCCCTGCGTCCCGTGGGGACTGGGGGCTCCGCGGGCACGGATGGAGCCGACCGCGGGCGGCGGGGGCGCTGGTGGGCTCTGAGCTCTGTGCGGCCCCGCAGGTGCGCGCGGAGCCATGGTTATCATGTCGGAGTTCAGCGCGGACCCCGCG
................................................................................................................................................(((.......))).((((((.(((....((((.....))))...))).))))))....................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040041(GSM532926)
G612T. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		GSM532877(GSM532877)
G691N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
.....................................................................................................................................................CCGCGGGCGGCGGGGGGGGG................................................................................. 205.000.00---3.00-2.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGCGGGCGGCGGGGGGGG.................................................................................. 195.000.00---3.00-2.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGCGGGCGGCGGGGGGGA.................................................................................. 192.000.00---1.00-1.00-------------------------------------------------------------------------------------------------
.............GGAGCGGGCGGCGGGGGGGG......................................................................................................................................................................................................................... 201.000.00-----1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTGCGCGCGGAGCCGCA................................. 181.000.00-----------------------------------------------------------------------------------1.00-------------------
........CGGGTGGAGCGGGCGCTA................................................................................................................................................................................................................................ 1821.000.00--------------------------------------------------------------------1.00----------------------------------
........CGGGTGGAGCGGGCGGCCC............................................................................................................................................................................................................................... 191.000.00---------------------------------------------------------------1.00---------------------------------------
..........................................................................................................................................................GGCGGCGGGGGCGCTGCA.............................................................................. 181.000.00----------------------------------------------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................CCGCGCTGAACTCCGACATGATA........ 2311.001.00--------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................GCGGGGCCGCACAGAG.................................................... 1620.500.50-------------------------------------------------------------------------------------------0.50-----------