ID: uc002zdf.2_intron_11_0_chr21_44845404_r
GENE: SIK1(2)
chr21:44845354-44845952-


(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(3)
BREAST
(14)
CELL-LINE
(4)
CERVIX
(4)
HEART
(9)
HELA
(5)
LIVER
(4)
OTHER
(1)
RRP40.ip
(20)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GCAACTTCGCGGTGGTGAAGCTGGCGCGGCATCGAGTCACCAAAACGCAGGTGCGTGGGGGCGGTGGGACCCAGCCGGCGGGGCCTCCCCACTGGACCCGGGGCGACCCGACCTTTGGCGGGTGGACCCCATGCAGATTCACTGCTCCAGGCTTGATTGTCGTGGTGGGTAAATAGTAACCGTTTTTAGTTCGGTAAAGAAAAATAATGCTTTATATTATGTTGCTGCATAATTTGGACATATATTGGGAGAAAGCAGAGAGGATAATAGCAAAAAAAAGGACCAACCTAAGATTGCAGTGGTTCATGGACTCAGAGCTAAACCCTGTAAAGTGAGCCTGCAAATACTTAAGTCACTTACTTAACTCTGATTATTTTAAATAACATTAGTGGTTACTTTGGTTATGTTTTCCCAACTTCTTGTGACCTTCTGGAGACAGAGTGTTGAGAAATTAACTTGCAAAAAATGAAATGTGTAAATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAGGTTGCAATAAAAATAATTGATAAAACACGATTAGATTCAAGCAATTTGGA
.........................................................(((((((((((......((((.((((...)))).))))....((((..(((((.((...)))))))...)))).......)))))))))))...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...............................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM359178(GSM359178)
hela_nucl_t. (hela)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAG..................................................7716.006.00---5.00-----------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTAAATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAG..................................................7916.006.00---5.00--1.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................GATTGCAGTGGTTCATGGACTCAGAGCT........................................................................................................................................................................................................................................................................................2814.004.00----------3.00---------------------------1.00----------------------------
.................................................................................................................................................................................................................................................................................................AAGATTGCAGTGGTTCATGG..................................................................................................................................................................................................................................................................................................2014.004.00-2.002.00----------------------------------------------------------------
.................................................................................................................................................................................................................................................ATATTGGGAGAAAGCAGAGA..................................................................................................................................................................................................................................................................................................................................................2014.004.004.00------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAGT.................................................724.000.00------4.00------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................AAGATTGCAGTGGTTCATGGACTCAGAGCT........................................................................................................................................................................................................................................................................................3013.003.00------------2.00--------------------------------------1.00---------------
............................................................................................................................................................................................................................................................................................AACCTAAGATTGCAGTGGTTCATGG..................................................................................................................................................................................................................................................................................................2513.003.00-1.002.00----------------------------------------------------------------
.........................................................................GCCGGCGGGGCCTCCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00---------3.00---------------------------------------------------------
............................................................................................................................................................................................................................................................................................AACCTAAGATTGCAGTGGTTCATGGACT...............................................................................................................................................................................................................................................................................................2813.003.00-------------3.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ACTCTGATTATTTTAAACTTT.......................................................................................................................................................................................................................213.000.00----------------3.00--------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACACGATTAGATTCAAGC........2213.003.003.00------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTAGGTTGAGGGTTTCTTTTG...................................................................................................263.000.003.00------------------------------------------------------------------
.........................................................................................................................................................................................................................................TTGGACATATATTGGGAG............................................................................................................................................................................................................................................................................................................................................................1813.003.003.00------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAATATCCTTTTTCTTTTTAAATTTGTAG..................................................3312.002.00-----2.00-------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCTTGTGACCTTCTG.......................................................................................................................................................................1912.002.00----2.00--------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGGTTGAGGGTTTCT.......................................................................................................1912.002.00-2.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACGATTAGATTCAAGCAATTTGGA2812.002.00--2.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTTTTTCTTTTTAAATTT......................................................2312.002.00--------------2.00----------------------------------------------------
........GCGGTGGTGAAGCTGGCGCGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................232.000.00--2.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................ACCAACCTAAGATTGCAGT...........................................................................................................................................................................................................................................................................................................1912.002.00-----------2.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAGA.................................................662.000.00------2.00------------------------------------------------------------
....................................................GCGTGGGGGCGGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................162.000.00------------------------------------------------1.00---1.00--------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAG..................................................7612.002.00-------------------------2.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................TGGACTCAGAGCTAAACCCTGTAAAG...........................................................................................................................................................................................................................................................................2612.002.00-----2.00-------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTTTCTTTTTAATAG.......................................................202.000.00-------2.00-----------------------------------------------------------
................................................................................................................................................................................................................................................................................................TAAGATTGCAGTGGTTCATG...................................................................................................................................................................................................................................................................................................2012.002.00-2.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTTCTTTTTTTAAAAAG......................................................................................212.000.00-------2.00-----------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACCTTCTGGAGACA.................................................................................................................................................................1812.002.00-1.00-------------------------------------1.00---------------------------
............TGGTGAAGCTGGCGCGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.002.00------------------------------------------------------------------
....................................................................................................................................................................................................................TATATTATGTTGCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................182.000.00------------------------------1.00------------------------1.00-----------
................................................................................................................................................................................................................................................................AGAGAGGATAATAGCAAAAAAAAGGA.............................................................................................................................................................................................................................................................................................................................2612.002.00--2.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................ATTTGGACATATATTGGGAGAAAGCA......................................................................................................................................................................................................................................................................................................................................................2612.002.00--2.00----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACAGAGTGTAGGG.......................................................................................................................................................192.000.00-----------------------2.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTAGGTTGCAA...........................................1821.501.501.50------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TAAGTCACTTACTTAACT.........................................................................................................................................................................................................................................1821.501.50-1.50-----------------------------------------------------------------
....CTTCGCGGTGGTGAAGCTGGCGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------------------------------------------------------1.00------------
...........................................................................................................................................................................................................................TGTTGCTGCATAATTTGGACA.......................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGATTAGATTCAAGCAATT....2211.001.00-------------------------------------------------1.00-----------------
...........................................................................................................................................................................................................................................................................................................TGGTTCATGGACTCAGAGC.........................................................................................................................................................................................................................................................................................1911.001.00----1.00--------------------------------------------------------------
.......................................................................................................................................................................................TTTTAGTTCGGTAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------1.00----------------------------------------------------------
....................................................................................................................................................................................................................TATATTATGTTGCTGCAGT................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------1.00-----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTTTCTTTTTAATCAG......................................................211.000.00--------------------------1.00----------------------------------------
.........................................................................................................................................................................................TTAGTTCGGTAAAGAAAAATAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001.001.00------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTTGAGGGTTTCTTTTCTTTTT..............................................................................................2611.001.00-------------------------------------------------------------1.00-----
...................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTACTTTGGTTATGTT...............................................................................................................................................................................................2111.001.00----1.00--------------------------------------------------------------
......................................................................................................................................................................................................................................................GGGAGAAAGCAGAGAGGAT..............................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00-------------------------
..............................................................................................................................................................................................................................................................................................................TTCATGGACTCAGAGCTAAAC....................................................................................................................................................................................................................................................................................2111.001.00-------------------1.00-----------------------------------------------
.............................................................................................................................................................................................................................................ACATATATTGGGAGAAATAT......................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGTGACCTTCTGGAGACAGAG..............................................................................................................................................................2611.001.00----1.00--------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAACTTGCAAAAAAT....................................................................................................................................2011.001.00--------1.00----------------------------------------------------------
...............................................CAGGTGCGTGGGGGCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------1.00---------
....................................................GCGTGGGGGCGGTGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------------------------------------1.00--------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTTTTTAAAAAAACCCACAGA.............................................................................2611.001.00------------------------1.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTAGGTTGAGGGTTTC........................................................................................................2011.001.00--1.00----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTCTTGTGACCTTCT........................................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................................AATTTGGACATATATTGGGAGAA..........................................................................................................................................................................................................................................................................................................................................................2311.001.00----------1.00--------------------------------------------------------
.........CGGTGGTGAAGCTGGCGCGGCATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00----------------------------------------1.00--------------------------
................................................................................................................................................................................................................................................................................................TAAGATTGCAGTGGTTCATC...................................................................................................................................................................................................................................................................................................201.000.00-1.00-----------------------------------------------------------------
................................................................................................................................................................................................................................................................................................TAAGATTGCAGTGGTTCATGGAC................................................................................................................................................................................................................................................................................................2311.001.00---------------------1.00---------------------------------------------
..................................................................................................................................................................................................................................................................................................AGATTGCAGTGGTTCATGGAC................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................................................AGTGGTTCATGGACTCAGAG..........................................................................................................................................................................................................................................................................................2011.001.00-----1.00-------------------------------------------------------------
.......CGCGGTGGTGAAGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--1.00----------------------------------------------------------------
.............................................................................................................................................................................................TTCGGTAAAGAAAAATAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----1.00--------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................TTCATGGACTCAGAGCTAAACCCTGT...............................................................................................................................................................................................................................................................................2611.001.001.00------------------------------------------------------------------
....................................................................................................................................................................................................................TATATTATGTTGCTGCAGTT...............................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------1.00------
................................................................................................................................................................................................................................................................................................TAAGATTGCAGTGGTTCATGG..................................................................................................................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTTCTTTTTAAATATAG....................................................211.000.00-----------------------------------------------------------1.00-------
.............................................................................................................................................................................................................................................................................................................................................................................................AACATTAGTGGTTACTTTG.......................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------
..................................................GTGCGTGGGGGCGGTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00------------------------------
....................................................GCGTGGGGGCGGTGGCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................ATGGACTCAGAGCTAAACCCTGT...............................................................................................................................................................................................................................................................................2311.001.001.00------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................AAGGACCAACCTAAGATTG...............................................................................................................................................................................................................................................................................................................1911.001.00--1.00----------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTTTTTAAATTTGTAGGTTGC.............................................2611.001.00----1.00--------------------------------------------------------------
..AACTTCGCGGTGGTGAAGCTGGCGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00-----------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................ATGTTGCTGCATAATTTGGACA.......................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00-----------------------
.................................................................................................................................................................................................................................................................................................AAGATTGCAGTGGTTCATA...................................................................................................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................AGATTGCAGTGGTTCATGGACTCAGA...........................................................................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00-------------
.................................................................................................................................................................................................................................................................................................AAGATTGCAGTGGTTCATGGA.................................................................................................................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTTTCTTTTTAATAT.......................................................201.000.00--------------------------1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTTCTTTTCTTTATT.............................................................................................181.000.00------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACGATTAGATTCAAG.........1911.001.00------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................CTAAACCCTGTAAAGTGAGCCTGCA.................................................................................................................................................................................................................................................................2511.001.00-----------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTTCTTTTTTTAAAAAAACCC..................................................................................2611.001.00------------------------1.00------------------------------------------
............................................................................................................................................................................................................................................................................................AACCTAAGATTGCAGTGGTTCATG...................................................................................................................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................ACCAACCTAAGATTGCAG............................................................................................................................................................................................................................................................................................................1811.001.00----1.00--------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................TGCAGTGGTTCATGGACTCAGA...........................................................................................................................................................................................................................................................................................2211.001.00------------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................TGGACTCAGAGCTAAGAA...................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------1.00----------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAG..................................................6811.001.00---1.00---------------------------------------------------------------
....................................................GCGTGGGGGCGGTGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTGTAAAGTGAGCCTGCAAATACT...........................................................................................................................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTTCTTTTCTTTTTTTTTTC........................................................................................241.000.00-----------------------------------------------1.00-------------------
......................................................................................................................................................................................................................................................................................................................................................AATACTTAAGTCACTTACTTAACT.........................................................................................................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTAGGTTGAGG.............................................................................................................1611.001.00-----1.00-------------------------------------------------------------
.....TTCGCGGTGGTGAAGCTGGCGCGGTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00----------------------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................ACCTAAGATTGCAGTGGTT.......................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------1.00---------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAAATTAGGTTGAGGG............................................................................................................2411.001.00-----------1.00-------------------------------------------------------
...................................................................................................................................................................................................................................................................................................GATTGCAGTGGTTCATGGA.................................................................................................................................................................................................................................................................................................1911.001.00-----------------1.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................GTGGTTCATGGACTCAGAGCTAAACC...................................................................................................................................................................................................................................................................................2611.001.00-------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTTTCTTTTTTTAAAAAG......................................................................................221.000.00-------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCTTTTTTTAAAACG......................................................................................201.000.00-------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTTCTTTTTTTAAATAA......................................................................................231.000.00------------------1.00------------------------------------------------
.................................GAGTCACCAAAACGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------------1.00----------
.................................................................................................................................................................................................................................................................................................................ATGGACTCAGAGCTAAACCCT.................................................................................................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................GTTGCTGCATAATTTGGAC........................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00----------------------------------------------------------------
...................................................................................................................TGGCGGGTGGACCCCATGCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------1.00----------------------------------
.....TTCGCGGTGGTGAAGCTGGCGCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00--------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................AAGATTGCAGTGGTTCATG...................................................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................AACCTAAGATTGCAGTGGTTCATGGAC................................................................................................................................................................................................................................................................................................2711.001.00-1.00-----------------------------------------------------------------
........................................................................................................................................................................................................................TTATGTTGCTGCATAATTTGGA.........................................................................................................................................................................................................................................................................................................................................................................2211.001.00--1.00----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TAAGTCACTTACTTAACTCTGATTATTTTAAATA.........................................................................................................................................................................................................................3411.001.00-----1.00-------------------------------------------------------------
..................................................................................................................................................................................................................................................TATTGGGAGAAAGCAG.....................................................................................................................................................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------0.50--
.......................................................................................................................................................................................................................................................................................................................................................................CTTAACTCTGATTATTT...............................................................................................................................................................................................................................1720.500.50-----------------------------------------------------------------0.50-
.....................................................................................................................................................GGCTTGATTGTCGTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------0.50---
..............................................................................................................................................................................................................................................................................................................TTCATGGACTCAGAGC.........................................................................................................................................................................................................................................................................................1660.170.17------------------------------------------------------------------0.17
..........................................................................CCGGCGGGGCCTCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.140.14---------------------------------------------------------------0.14---
...................................................................................................................................................................................................................................................................................................................................................................CTTACTTAACTCTGA.....................................................................................................................................................................................................................................1570.140.14------------------------------------------------------------------0.14

Antisense strand
GCAACTTCGCGGTGGTGAAGCTGGCGCGGCATCGAGTCACCAAAACGCAGGTGCGTGGGGGCGGTGGGACCCAGCCGGCGGGGCCTCCCCACTGGACCCGGGGCGACCCGACCTTTGGCGGGTGGACCCCATGCAGATTCACTGCTCCAGGCTTGATTGTCGTGGTGGGTAAATAGTAACCGTTTTTAGTTCGGTAAAGAAAAATAATGCTTTATATTATGTTGCTGCATAATTTGGACATATATTGGGAGAAAGCAGAGAGGATAATAGCAAAAAAAAGGACCAACCTAAGATTGCAGTGGTTCATGGACTCAGAGCTAAACCCTGTAAAGTGAGCCTGCAAATACTTAAGTCACTTACTTAACTCTGATTATTTTAAATAACATTAGTGGTTACTTTGGTTATGTTTTCCCAACTTCTTGTGACCTTCTGGAGACAGAGTGTTGAGAAATTAACTTGCAAAAAATGAAATGTGTAAATTAGGTTGAGGGTTTCTTTTCTTTTTTTAAAAAAACCCACAGAATATCCTTTTTCTTTTTAAATTTGTAGGTTGCAATAAAAATAATTGATAAAACACGATTAGATTCAAGCAATTTGGA
.........................................................(((((((((((......((((.((((...)))).))))....((((..(((((.((...)))))))...)))).......)))))))))))...................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150...............................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM359178(GSM359178)
hela_nucl_t. (hela)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTAGGTTGAGGGTTTACCG..................................................................................................... 233.000.00---------------3.00---------------------------------------------------
.................................GAGTCACCAAAACGCTAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00--------1.00----------------------1.00-----------------------------------
......................................CCCCCACGCACCTGCGTTTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2312.002.00----------------------2.00--------------------------------------------
.................................GCGTTTTGGTGACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1512.002.00--------2.00----------------------------------------------------------
.....................................................................CCCAGCCGGCGGGGCGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 182.000.00---------2.00---------------------------------------------------------
........................................................................................CCACTGGACCCGGGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 182.000.00--------------------2.00----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTTCTTTTTTTAAGC........................................................................................ 211.000.00-----------------------------------1.00-------------------------------
.................................GAGTCACCAAAACGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 161.000.00---------------------------------------------1.00---------------------
......................................................................................................................................................................................................................................................................................................TGCAGTGGTTCATGGACTTC............................................................................................................................................................................................................................................................................................. 201.000.00----------------------------1.00--------------------------------------
......................................................................................................................................................................................................................................................................................GCAATCTTAGGTTGGTCCT.............................................................................................................................................................................................................................................................................................................. 1911.001.00--------------------------------------------------------------1.00----
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACCCACAGAATACTAC...................................................................... 211.000.00--------------------------------------------------1.00----------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGTTGGGAAAAC.................................................................................................................................................................................. 1680.120.12------------------0.12------------------------------------------------