ID: uc002yyq.1_intron_31_0_chr21_42080698_r.5p
GENE: DSCAM(1)
chr21:42218345-42218594-


(2)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(6)
BREAST
(19)
CELL-LINE
(8)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(3)
OTHER
(14)
SKIN
(1)
XRN.ip

Sense strand
CAGGGGCATGTGGATACTGGCTCTCTCCTTGTTCCAGAGCTTCGCGAATGGTGAGCCTTTCGGTTTGTGATGAATTTCGTTTCCTTATCATTGACCGGGGGGGCGGGGGGGTGGGGGGTGGCATTGGATGCATGGGTAAAGTCTTCTTTCTTTTTCCGCTTCATCTGTGTTTAAAATTTCGTGCTTTTATTTATTTTTTAAATATCATATTTATTTTTTGGGGGAGAAGAGGTGGCAATGGAGAGGCCCG
...................................................................................................(((((((..(((.((((((.(((.(((..........))).))).)))))))))..)))))))....((((((((((...................)))))))))).............................................
................................................................................................97............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................GGCGGGGGGGTGGGGTC....................................................................................................................................1716.000.00-4.00------1.00--2.00-------1.00-1.00---1.001.00----------1.001.00-1.00-1.00---1.00----------
........................................................................................................GGGGGGGTGGGGGGTATC................................................................................................................................189.000.009.00--------------------------------------------------------
.....................................................................................................GGCGGGGGGGTGGGGTCC...................................................................................................................................187.000.00----1.002.00------2.00---1.00-------1.00--------------------------------
.....................................................................................................GGCGGGGGGGTGGGGTCCT..................................................................................................................................194.000.00-2.00--1.00---1.00------------------------------------------------
.....................................................................................................GGCGGGGGGGTGGGGGGTCC.................................................................................................................................202.000.00-----------------1.00-----------------1.00---------------------
.......................................................................................................................................................................................CTTTTATTTATTTTTTAAAG...............................................202.000.00-----------------------------------------------1.00-----1.00---
.....................................................................................................GGCGGGGGGGTGGGGGGATG.................................................................................................................................201.000.00---------------------------------------------------1.00-----
..............................................................GTTTGTGATGAATTTCA...........................................................................................................................................................................171.000.00-----------------------------1.00---------------------------
..........TGGATACTGGCTCTCTCC..............................................................................................................................................................................................................................1811.001.00--------------------------------1.00------------------------
..........................................................................................................................................................................................................................TGGGGGAGAAGAGGTGGTGTT...........211.000.00-------------------------------------------------1.00-------
..........................................................................................................GGGGGTGGGGGGTGGCATAGTT..........................................................................................................................221.000.00------1.00--------------------------------------------------
.....................................................................................................GGCGGGGGGGTGGGGTCA...................................................................................................................................181.000.00------------------------------------1.00--------------------
...............................................................................................................................................TTCTTTCTTTTTCCGCTTCTTG.....................................................................................221.000.00------------------1.00--------------------------------------
..................................................................................................GGGGGCGGGGGGGTGGGGTGCG..................................................................................................................................221.000.00-------1.00-------------------------------------------------
......................................................................................................GCGGGGGGGTGGGGG.....................................................................................................................................1501.001.00------------------------------------------------1.00--------
.................................................................................................GGGGGGCGGGGGGGTCTGT......................................................................................................................................191.000.00----------------------1.00----------------------------------
.............................................................................................ACCGGGGGGGCGGGGGGGTGGCG......................................................................................................................................231.000.00----------1.00----------------------------------------------
..............................................................................................CCGGGGGGGCGGGGGCGGC.........................................................................................................................................191.000.00----------------------------------1.00----------------------
.............................................................................................................................GGATGCATGGGTAAAGCA...........................................................................................................181.000.00--1.00------------------------------------------------------
............................................................................................GACCGGGGGGGCGGGGGG............................................................................................................................................1811.001.00---------------------------1.00-----------------------------
.....................................................................................................GGCGGGGGGGTGGGGTTC...................................................................................................................................181.000.00--------------------------------------------------1.00------
.............................................................................................................................................TCTTCTTTCTTTTTCCATCG.........................................................................................201.000.00----------------------------------------------------1.00----
...............................................................................................CGGGGGGGCGGGGGGGAGGG.......................................................................................................................................201.000.00-----------------------------------------1.00---------------
..................................................................................................GGGGGCGGGGGGGTGGGTTAT...................................................................................................................................211.000.00------1.00--------------------------------------------------
...............................................................................................CGGGGGGGCGGGGGGGTGGGGGCCCT.................................................................................................................................261.000.00------------------------------1.00--------------------------
................................................................................................GGGGGGGCGGGGGGGTGCCC......................................................................................................................................201.000.00----------------------------1.00----------------------------
.............................................................................................................GGTGGGGGGTGGCATTGTAT.........................................................................................................................201.000.00--------------------------------------------1.00------------
..............................................................................................CCGGGGGGGCGGGGGGGAGG........................................................................................................................................201.000.00---1.00-----------------------------------------------------
.................................................................................................................................................................................................TTTTTTAAATATCATATTTTGT...................................221.000.00-------------------------------------------1.00-------------
........................................................................................................GGGGGGGTGGGGGGTTATG...............................................................................................................................191.000.00-----------------------1.00---------------------------------
..................................................................................................................................................................................................TTTTTAAATATCATATTTTTG...................................211.000.00--1.00------------------------------------------------------
...............................................................................................CGGGGGGGCGGGGGGGTGGG.......................................................................................................................................2020.500.50------------------------------------------------------0.50--
...........................................................................................................................................................................................................................GGGGGAGAAGAGGTGGC..............1730.330.33-------------------------------------------------------0.33-
.............................................................................................ACCGGGGGGGCGGGGG.............................................................................................................................................1660.170.17---0.17-----------------------------------------------------
........................................................................................................................................................................................................................................TGGCAATGGAGAGGC...1580.120.12--------------------------------------------------------0.12

Antisense strand
CAGGGGCATGTGGATACTGGCTCTCTCCTTGTTCCAGAGCTTCGCGAATGGTGAGCCTTTCGGTTTGTGATGAATTTCGTTTCCTTATCATTGACCGGGGGGGCGGGGGGGTGGGGGGTGGCATTGGATGCATGGGTAAAGTCTTCTTTCTTTTTCCGCTTCATCTGTGTTTAAAATTTCGTGCTTTTATTTATTTTTTAAATATCATATTTATTTTTTGGGGGAGAAGAGGTGGCAATGGAGAGGCCCG
...................................................................................................(((((((..(((.((((((.(((.(((..........))).))).)))))))))..)))))))....((((((((((...................)))))))))).............................................
................................................................................................97............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................................................GGGGAGAAGAGGTGGGCGC........... 191.000.00-------------------------------1.00-------------------------
.......................................................................................................CGGGGGGGTGGGGGGGCAC................................................................................................................................ 191.000.00---------1.00-----------------------------------------------
..........................................................................................................GGGGGTGGGGGGTGGCATTGCT.......................................................................................................................... 221.000.00----------1.00----------------------------------------------
..............................................................................................CCGGGGGGGCGGGGGGGCGGG....................................................................................................................................... 211.000.00--------------1.00------------------------------------------
...............................................................................................CGGGGGGGCGGGGGGTCCT........................................................................................................................................ 191.000.00---------1.00-----------------------------------------------
..............................................................................................................................................................................AATTTCGTGCTTTTAGCGA......................................................... 191.000.00--1.00------------------------------------------------------
..............................................................................................CCGGGGGGGCGGGGGGGGGC........................................................................................................................................ 201.000.00---1.00-----------------------------------------------------
..............................................................................................CCGGGGGGGCGGGGGGGGGT........................................................................................................................................ 201.000.00-------------1.00-------------------------------------------
...............................................................................................CGGGGGGGCGGGGGGGTGGTC...................................................................................................................................... 211.000.00-------1.00-------------------------------------------------
...............................................................................................CGGGGGGGCGGGGGGTCG......................................................................................................................................... 181.000.00---------------------------------1.00-----------------------
..............................................................................................................................................CTTCTTTCTTTTTCCGGAG......................................................................................... 191.000.00--------------------1.00------------------------------------
...................................................................................................GGGGCGGGGGGGTGGGCG..................................................................................................................................... 181.000.00---------------------------------------1.00-----------------
...........................................................................................TGACCGGGGGGGCGGGC.............................................................................................................................................. 171.000.00-------------1.00-------------------------------------------
................................................................................................GGGGGGGCGGGGGGGTGGGCCC.................................................................................................................................... 221.000.00---------------1.00-----------------------------------------
.....................................................................................................GGCGGGGGGGTGGGGGGA................................................................................................................................... 181.000.00---------------------------------------------1.00-----------