ID: uc002yvg.2_intron_35_0_chr21_37664532_f.5p
GENE: (36)
chr21:37664482-37664731+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(5)
BRAIN
(6)
BREAST
(19)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(1)
HELA
(1)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
GCAAACCCCACACTGTCAGGATTCTAGAACTTCTAAAATTAAAGTTTGGGGTAAGTGCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTGGTGAGACAGAGTTTCACTCGGCCACCCAGGTTAGAGTGCAGTGGTGCGGTCTTCGCTTACTGCAGCCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCTTCCGGAGTAGCTGGGATTACAGGAATGTGCCACCACACCTGGCTAATTTTGTTTTG
........................................................................................((((((((...)))))))).((((....((((..(((((((((((.(((.....)))))))))))..))).))))....))))...............................................................................
..................................................51........................................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCG..................................................................................................................................................................3019.000.00--7.006.004.002.00-------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTATTG..................................................................................................................................................................3013.000.00--8.002.00-3.00-------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTATTG...................................................................................................................................................................2911.000.00--8.003.00---------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTAGTT.........................................................................................................................................................................268.000.007.001.00-----------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCTCG................................................................................................................................................................296.000.00--1.001.001.003.00-------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCCCG................................................................................................................................................................295.000.004.00---1.00--------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTATTG...................................................................................................................................................................284.000.00--3.001.00---------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTACG..................................................................................................................................................................313.000.00--1.00-2.00--------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCAAG................................................................................................................................................................292.000.001.00--------1.00---------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTACG...................................................................................................................................................................292.000.00----2.00--------------------------------------------
...............................................................TTTTCTTTTCTTTTTTTTTTTTTTTGGTAGGG...........................................................................................................................................................322.000.001.001.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTCG..................................................................................................................................................................312.000.00----1.001.00-------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTTTTCTCG................................................................................................................................................................302.000.00-----2.00-------------------------------------------
.....................................................AGTGCTTTTCTTTTCTTTTAAC...............................................................................................................................................................................222.000.002.00------------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGGACG............................................................................................................................................................282.000.002.00------------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCCC.................................................................................................................................................................282.000.002.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTACG...........................................................................................................................................................252.000.001.001.00-----------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTAACC...................................................................................................................................................................282.000.00-2.00-----------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTACAG..................................................................................................................................................................302.000.00--1.00-1.00--------------------------------------------
...................................................................CTTTTCTTTTTTTTTTTTTTTGCGGG.............................................................................................................................................................262.000.002.00------------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTAGTT............................................................................................................................................................................232.000.002.00------------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTTTTCCCG................................................................................................................................................................301.000.00--1.00----------------------------------------------
....................................................................TTTTCTTTTTTTTTTTTTTTGGCTAT............................................................................................................................................................261.000.001.00------------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCCCT................................................................................................................................................................321.000.00---1.00---------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGCTTT............................................................................................................................................................301.000.00-1.00-----------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCTAG................................................................................................................................................................291.000.00----1.00--------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTACC...........................................................................................................................................................251.000.001.00------------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTAGTC...................................................................................................................................................................291.000.001.00------------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCGGG................................................................................................................................................................321.000.001.00------------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTAGTC.....................................................................................................................................................................251.000.001.00------------------------------------------------
..........................................................................................................................................................................................................................ATGTGCCACCACACCTGCCAT...........211.000.00---------------------------------------------1.00---
.................................................................TTCTTTTCTTTTTTTTTTTTTTTGGGGG.............................................................................................................................................................281.000.001.00------------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTTTTTTTTGAG...................................................................................................................................................................321.000.001.00------------------------------------------------
..................................................................................................................................................TACTGCAGCCTCCACCTCCCAGGTTCATA...........................................................................291.000.00---------------------------------------1.00---------
...................................................................................................................................................ACTGCAGCCTCCACCTCCCAGGGCC..............................................................................251.000.001.00------------------------------------------------
.....................................................................TTTCTTTTTTTTTTTTTTTGGTGGGGC..........................................................................................................................................................271.000.00-1.00-----------------------------------------------
.......CCACACTGTCAGGATTCTAGAACTTCTG.......................................................................................................................................................................................................................281.000.00-------------1.00-----------------------------------
...................................................................CTTTTCTTTTTTTTTTTTTTTGGGCC.............................................................................................................................................................261.000.001.00------------------------------------------------
.....................................................................TTTCTTTTTTTTTTTTTTTGGTGGCT...........................................................................................................................................................261.000.001.00------------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTACG......................................................................................................................................................................261.000.00---1.00---------------------------------------------
....................................................................................................................................................................................................CGGAGTAGCTGGGATTACAG..................................2001.001.00---------------------------------1.00---------------
..............................................................CTTTTCTTTTCTTTTTTTTTTTTTCACG................................................................................................................................................................281.000.00-----1.00-------------------------------------------
..................................................................................................................................................................................................TCCGGAGTAGCTGGGATTACAGG.................................2301.001.00-------1.00-----------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCGG.................................................................................................................................................................281.000.00-----1.00-------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCCCG................................................................................................................................................................321.000.00----1.00--------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGCCGG.............................................................................................................................................................291.000.00-1.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTCACG................................................................................................................................................................331.000.00-----1.00-------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGGG..............................................................................................................................................................281.000.001.00------------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTTTAGTT.......................................................................................................................................................................281.000.001.00------------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTTTGTGC..............................................................................................................................................................311.000.001.00------------------------------------------------
.......................................................................................................CACTCGGCCACCCAGTCTG................................................................................................................................191.000.00--------------------------1.00----------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGGC..............................................................................................................................................................261.000.001.00------------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTTTTTTGGGTC.............................................................................................................................................................331.000.001.00------------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGCC..............................................................................................................................................................261.000.001.00------------------------------------------------
.................................................................TTCTTTTCTTTTTTTTTTTTTTTGGCGG.............................................................................................................................................................281.000.001.00------------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTTCCAG...............................................................................................................................................................341.000.00--1.00----------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGAGCG............................................................................................................................................................301.000.001.00------------------------------------------------
.......................................................................TCTTTTTTTTTTTTTTTGGTGAGG...........................................................................................................................................................241.000.001.00------------------------------------------------
..........................................................................................................................................................................TCAAGTGATTCTCCTGCCTCAGCTTCCGGG..................................................301.000.00-1.00-----------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGTAGGG...........................................................................................................................................................291.000.001.00------------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCGAG................................................................................................................................................................321.000.001.00------------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGCGG..............................................................................................................................................................281.000.00--1.00----------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGCTAC............................................................................................................................................................281.000.00-1.00-----------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTACA...................................................................................................................................................................291.000.00----1.00--------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCGCC................................................................................................................................................................321.000.001.00------------------------------------------------
........................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA.........................................................251.000.00-------------------------------------1.00-----------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTTTTCTCC................................................................................................................................................................311.000.00-1.00-----------------------------------------------
........................................................................CTTTTTTTTTTTTTTTGGTGCGG...........................................................................................................................................................231.000.00-1.00-----------------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTTTTTTCTAG................................................................................................................................................................321.000.00-----1.00-------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGGC..............................................................................................................................................................281.000.001.00------------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTACG......................................................................................................................................................................251.000.00---1.00---------------------------------------------
............................ACTTCTAAAATTAAATTCA...........................................................................................................................................................................................................191.000.00-----1.00-------------------------------------------
...................................................................CTTTTCTTTTTTTTTTTTTTTGGGAGT............................................................................................................................................................271.000.001.00------------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTCG...........................................................................................................................................................................241.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTAGCC...........................................................................................................................................................251.000.001.00------------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGTTC.............................................................................................................................................................291.000.00-1.00-----------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGTAGGC...........................................................................................................................................................291.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTGGGC...........................................................................................................................................................251.000.001.00------------------------------------------------
.....................................................................TTTCTTTTTTTTTTTTTTTGGTTGCC...........................................................................................................................................................261.000.00-1.00-----------------------------------------------
..................................................................................................................................................................................................TCCGGAGTAGCTGGGATTACA...................................2101.001.00------------------------------------------1.00------
.......................................................TGCTTTTCTTTTCTTTTCTTTTTTTTTTTC.....................................................................................................................................................................301.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTATGG...........................................................................................................................................................251.000.001.00------------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTTTGGAGG.............................................................................................................................................................321.000.00-1.00-----------------------------------------------
...........................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA.........................................................221.000.00---------------------1.00---------------------------
..................................................................................................................CCAGGTTAGAGTGCAGTGGTCA..................................................................................................................221.000.00------------------------1.00------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGCAGA............................................................................................................................................................301.000.001.00------------------------------------------------
...............................................................................................................................................................................................GCTTCCGGAGTAGCTGG..........................................1701.001.00------1.00------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGTTGG............................................................................................................................................................301.000.001.00------------------------------------------------
..................................................................................................................................................................................................TCCGGAGTAGCTGGGATTGC....................................201.000.00------------------------------------1.00------------
..............................................................CTTTTCTTTTCTTTTTTTTTTTTTCGGG................................................................................................................................................................281.000.001.00------------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTTTTTTGGGGTT............................................................................................................................................................341.000.00---1.00---------------------------------------------
.......................................................................TCTTTTTTTTTTTTTTTGGTGCGTG..........................................................................................................................................................251.000.00-1.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTAGTC.........................................................................................................................................................................241.000.001.00------------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTACC.................................................................................................................................................................321.000.00----1.00--------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTACCC...................................................................................................................................................................271.000.00-1.00-----------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTAG...........................................................................................................................................................................241.000.00-1.00-----------------------------------------------
..............................................................CTTTTCTTTTCTTTTTTTTTTAGTC...................................................................................................................................................................251.000.001.00------------------------------------------------
.................................................................TTCTTTTCTTTTTTTTTTTTTTTGCTGC.............................................................................................................................................................281.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTTAG...........................................................................................................................................................251.000.001.00------------------------------------------------
..............................................................................................................................................................................................AGCTTCCGGAGTAGCTGGGCCTA.....................................231.000.00---------------------------1.00---------------------
....................................................AAGTGCTTTTCTTTTCTTTTCTCAG.............................................................................................................................................................................251.000.001.00------------------------------------------------
....................................................................................................................................................................................................CGGAGTAGCTGGGATTGTAG..................................201.000.00------------1.00------------------------------------
....................................................................................................................................................................................................CGGAGTAGCTGGGATTACA...................................1901.001.00-------1.00-----------------------------------------
.....................................................................................................................................................................................TCCTGCCTCAGCTTCCGGGGAG...............................................221.000.001.00------------------------------------------------
........................................................GCTTTTCTTTTCTTTTCTTTTTTTTTATTT....................................................................................................................................................................301.000.00--1.00----------------------------------------------
..................................................................TCTTTTCTTTTTTTTTTTTTTTGGCGGC............................................................................................................................................................281.000.001.00------------------------------------------------
..............................................................CTTTTCTTTTCTTTTTTTTTTATTG...................................................................................................................................................................251.000.00----1.00--------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTCGT.................................................................................................................................................................281.000.00---1.00---------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGCAGG............................................................................................................................................................301.000.00-1.00-----------------------------------------------
........................................................GCTTTTCTTTTCTTTTCTTTTTTCG.........................................................................................................................................................................251.000.001.00------------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTTTTCGGG................................................................................................................................................................311.000.00-1.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTCCTG................................................................................................................................................................331.000.00----1.00--------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTATCG..........................................................................................................................................................................231.000.00--1.00----------------------------------------------
........................................................GCTTTTCTTTTCTTTTCTTTTTTTTCAC......................................................................................................................................................................281.000.001.00------------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTTCCG................................................................................................................................................................331.000.00-----1.00-------------------------------------------
.................................................................................................................................................................................................................................ACCACACCTGGCTAATTTTGAGAT.241.000.00-------------1.00-----------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTTCG...........................................................................................................................................................251.000.001.00------------------------------------------------
.....................................................................TTTCTTTTTTTTTTTTTTTGGTGGC............................................................................................................................................................251.000.00-1.00-----------------------------------------------
...............................................................TTTTCTTTTCTTTTTTTTTTTTTTTGCTGC.............................................................................................................................................................301.000.00-1.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTCTC......................................................................................................................................................................271.000.00-1.00-----------------------------------------------
...............................................................................TTTTTTTTTGGTGAGACCCTG......................................................................................................................................................211.000.00-1.00-----------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTACC....................................................................................................................................................................291.000.001.00------------------------------------------------
...............................................................TTTTCTTTTCTTTTTTTTTTTTTTTGGGG..............................................................................................................................................................291.000.001.00------------------------------------------------
....................................................................TTTTCTTTTTTTTTTTTTTTGGTTCTT...........................................................................................................................................................271.000.001.00------------------------------------------------
....................................................................TTTTCTTTTTTTTTTTTTTTGGTGGC............................................................................................................................................................261.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTGGGT...........................................................................................................................................................251.000.00-1.00-----------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTTTGTGCT.............................................................................................................................................................321.000.001.00------------------------------------------------
.....................................................................TTTCTTTTTTTTTTTTTTTGGTGAGATG.........................................................................................................................................................281.000.00-1.00-----------------------------------------------
....................................................................TTTTCTTTTTTTTTTTTTTTGGCCC.............................................................................................................................................................251.000.001.00------------------------------------------------
.................................................................TTCTTTTCTTTTTTTTTTTTTTTGGTAGGG...........................................................................................................................................................301.000.001.00------------------------------------------------
................................................................TTTCTTTTCTTTTTTTTTTTTTTTGGGAAA............................................................................................................................................................301.000.001.00------------------------------------------------
..........................................................................................................................................................................................................AGCTGGGATTACAGGAAATT............................201.000.00----------------------------1.00--------------------
..........................................................................................................................................................................................................AGCTGGGATTACAGGAATGC............................201.000.00------1.00------------------------------------------
...................................................................CTTTTCTTTTTTTTTTTTTTTGGGTT.............................................................................................................................................................261.000.001.00------------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTCCG.................................................................................................................................................................321.000.00----1.00--------------------------------------------
........................................................GCTTTTCTTTTCTTTTCTTTTTTTTTTCG.....................................................................................................................................................................291.000.001.00------------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTATAG...................................................................................................................................................................281.000.00-----1.00-------------------------------------------
...........................................................TTTCTTTTCTTTTCTTTTTTTTTTTTTCGG.................................................................................................................................................................301.000.00---1.00---------------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTTTTTTTTTTTC....................................................................................................................................................................311.000.00-1.00-----------------------------------------------
....................................................................................................................................................................................................CGGAGTAGCTGGGATTAC....................................1801.001.00--------1.00----------------------------------------
.......................................................TGCTTTTCTTTTCTTTTCTTGTAG...........................................................................................................................................................................241.000.00-1.00-----------------------------------------------
.................................................................................................................................................................................................TTCCGGAGTAGCTGGGTTGG.....................................201.000.00----------------------------------------1.00--------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTAAAG..................................................................................................................................................................311.000.00---1.00---------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTGGCGG..........................................................................................................................................................261.000.001.00------------------------------------------------
............................................................TTCTTTTCTTTTCTTTTTTTTTTTTTTTGGGAAC............................................................................................................................................................341.000.00---1.00---------------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTATTG...................................................................................................................................................................261.000.00-----1.00-------------------------------------------
..............................................................CTTTTCTTTTCTTTTTTTTTTTTTCGCG................................................................................................................................................................281.000.001.00------------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTTTCCAG................................................................................................................................................................331.000.00----1.00--------------------------------------------
.........................................................CTTTTCTTTTCTTTTCTTTTTTTTTTTATAG..................................................................................................................................................................311.000.00--1.00----------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTGGAGC..........................................................................................................................................................261.000.00-1.00-----------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTTGG...........................................................................................................................................................251.000.001.00------------------------------------------------
......................................................................TTCTTTTTTTTTTTTTTTGGTTTTC...........................................................................................................................................................251.000.00-1.00-----------------------------------------------
....................................................................TTTTCTTTTTTTTTTTTTTTGGTTTTA...........................................................................................................................................................271.000.00---------1.00---------------------------------------
..........................................................TTTTCTTTTCTTTTCTTTTTTTTACC......................................................................................................................................................................261.000.001.00------------------------------------------------
........................................................GCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTG.................................................................................................................................................................3340.500.50---0.50---------------------------------------------
...............................................................TTTTCTTTTCTTTTTTTTTTTTTTTGGTG..............................................................................................................................................................2950.400.400.20--------0.20---------------------------------------
.............................................................TCTTTTCTTTTCTTTTTTTTTTTTTTTGGT...............................................................................................................................................................3070.140.140.14------------------------------------------------

Antisense strand
GCAAACCCCACACTGTCAGGATTCTAGAACTTCTAAAATTAAAGTTTGGGGTAAGTGCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTGGTGAGACAGAGTTTCACTCGGCCACCCAGGTTAGAGTGCAGTGGTGCGGTCTTCGCTTACTGCAGCCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCTTCCGGAGTAGCTGGGATTACAGGAATGTGCCACCACACCTGGCTAATTTTGTTTTG
........................................................................................((((((((...)))))))).((((....((((..(((((((((((.(((.....)))))))))))..))).))))....))))...............................................................................
..................................................51........................................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
............................................TTTGGGGTAAGTGCTTAAGC.......................................................................................................................................................................................... 205.000.00----------1.00-----1.001.001.00-----------1.00------------------
.........................................................................................................................................................GCCTCCACCTCCCAGGTGCAG............................................................................ 212.000.00-2.00-----------------------------------------------
.......................................................................................................CACTCGGCCACCCAGGTG................................................................................................................................. 182.000.00----------------------------------1.00---1.00----------
....................................................................................................................................................CTGCAGCCTCCACCTCCCAGGTCGG............................................................................. 252.000.002.00------------------------------------------------
............................................TTTGGGGTAAGTGCTTAAG........................................................................................................................................................................................... 192.000.00---------------1.00-------------------------------1.00-
....................................................................................................................................................ACCTGGGAGGTGGAGGCTGCAG................................................................................ 2202.002.00------1.001.00-----------------------------------------
............................................TTTGGGGTAAGTGCTTAAGT.......................................................................................................................................................................................... 201.000.00----------------1.00--------------------------------
...................................................................................................................................................................................................AATCCCAGCTACTCCGG...................................... 1701.001.00------1.00------------------------------------------
................................................................................................................................................................CCTCCCAGGTTCAAGTGAGG...................................................................... 201.000.00--------1.00----------------------------------------
...............................................................................................................................................................ACCTCCCAGGTTCAAGTGATTCTCCGC................................................................ 271.000.00--------------------------------------------1.00----
....................................................................................................................................................ACTTGAACCTGGGAGGTGGAGGCTGCAG.......................................................................... 2801.001.00-------1.00-----------------------------------------
......................................................................................................................................................CCTGGGAGGTGGAGGCTGC................................................................................. 1901.001.00-------------------1.00-----------------------------
............................................TTTGGGGTAAGTGCTTTC............................................................................................................................................................................................ 181.000.00----------1.00--------------------------------------
.......................................................................................................CACTCGGCCACCCAGGTGTTA.............................................................................................................................. 211.000.00-----------------------------------1.00-------------
...................................................................................................................................................................CCCAGGTTCAAGTGATTCTCCCTT............................................................... 241.000.00------------1.00------------------------------------
.......................................................................................................CACTCGGCCACCCAGGTGTTG.............................................................................................................................. 211.000.00-----------1.00-------------------------------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTGGG............................................................................. 221.000.00-----------------------------------------1.00-------
................................................................................................................................................................CCTCCCAGGTTCAAGTGATTCTCCTGCCGCGG.......................................................... 321.000.00-----------1.00-------------------------------------
...................................................................................................................................................................................................CCTGTAATCCCAGCTACTCCGG................................. 2201.001.00--------1.00----------------------------------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTTCAAGTGGG....................................................................... 281.000.00-1.00-----------------------------------------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTTCAGGT.......................................................................... 251.000.00-1.00-----------------------------------------------
..................................................................................................................CCAGGTTAGAGTGCAGTGCATA.................................................................................................................. 221.000.00--------------------1.00----------------------------
............................................TTTGGGGTAAGTGCTTACAT.......................................................................................................................................................................................... 201.000.00----------------------------------------------1.00--
.....................................................................................................................................................TGCAGCCTCCACCTCCCAGGTCCG............................................................................. 241.000.00-1.00-----------------------------------------------
......................................................................................................................................................GCAGCCTCCACCTCCCAGGTTCAATGTC........................................................................ 281.000.00-1.00-----------------------------------------------
.........................................................................................................................................................CTTGAACCTGGGAGGTGGAGGC........................................................................... 2201.001.00-----------------------------1.00-------------------
............................................................................................................................................................................................TCAGCTTCCGGAGTAGAA............................................ 181.000.00-----------------------1.00-------------------------
.....................................................................................................................................................TGCAGCCTCCACCTCCCAGGAAGT............................................................................. 241.000.00--------------------------------1.00----------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTTGGG............................................................................ 231.000.00-1.00-----------------------------------------------
..................................................................................................................................................................................TTCTCCTGCCTCAGCTTGGCC................................................... 211.000.001.00------------------------------------------------
....................................................................................................................................................CTGCAGCCTCCACCTCCCAGGTTCGGG........................................................................... 271.000.00-1.00-----------------------------------------------
............................................TTTGGGGTAAGTGCTTAATC.......................................................................................................................................................................................... 201.000.00-----------------1.00-------------------------------
..................................................................................................................CCAGGTTAGAGTGCAGTGATGT.................................................................................................................. 221.000.00-------------------------------1.00-----------------
...................................................................................................................................................................................TCTCCTGCCTCAGCTTCCGGAT................................................. 221.000.00-------------------------------------------1.00-----
..............GTCAGGATTCTAGAAGCTC......................................................................................................................................................................................................................... 191.000.00--------------1.00----------------------------------
...................................................................................................................................................................CCCAGGTTCAAGTGATTCTCCTCGAA............................................................. 261.000.00----------1.00--------------------------------------
...................................................................................................................................................................................................CCGGAGTAGCTGGGATTACAGCCGG.............................. 251.000.00------------------------------------------------1.00
......................................................................................................................................................GCAGCCTCCACCTCCCAGGTTTC............................................................................. 231.000.00-1.00-----------------------------------------------
......................................................................................................................................................TTGAACCTGGGAGGTGGAGGCTGC............................................................................ 2401.001.00-------1.00-----------------------------------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTTCAGGG.......................................................................... 251.000.00-1.00-----------------------------------------------
....................................................................................................................................................................................................CGGAGTAGCTGGGATTACCCG................................. 211.000.00----------------------1.00--------------------------
.....................................................................................................................................................TGCAGCCTCCACCTCCCAGGTCTT............................................................................. 241.000.001.00------------------------------------------------
...............TCAGGATTCTAGAACTTC......................................................................................................................................................................................................................... 181.000.00--------------1.00----------------------------------
.......................................................................................................................................................CAGCCTCCACCTCCCAGGTTCAAGGGG........................................................................ 271.000.00---------1.00---------------------------------------
............................................TTTGGGGTAAGTGCTTTAG........................................................................................................................................................................................... 191.000.00---------------1.00---------------------------------
...................................................................................................................................................................CCCAGGTTCAAGTGATTCTCTAA................................................................ 231.000.00-------------------------1.00-----------------------
...................................................................................................................................................................................................TAATCCCAGCTACTCCGG..................................... 1801.001.00--------1.00----------------------------------------
................................................................................................................................................................CCTCCCAGGTTCAAGTGAAG...................................................................... 201.000.00------1.00------------------------------------------