ID: uc002yvc.1_intron_1_0_chr21_37506060_r.3p
GENE: (2)
chr21:37506010-37506259-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(25)
CELL-LINE
(1)
CERVIX
(2)
OTHER
(3)
SKIN

Sense strand
GCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGGAGGTTGCAGTAAACCGAGATTGCACCACTGCACTCCAACCTGTGCAACAGAGTGAGACTTTTCAAAAAAAAAAAAAAAGATCATTTGGAACCTTGTTTTAAGGATATGGGGCTATTTAGGCTTTCTATTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGGGTCTTCTCTGTCGCCCAGGCTGGAGTGCAGTGCTGCAGTCGTGGCTCAC
...............................................................................................................((((......(((..((.((((.....)))).))..)))......))))..........................................................................................
.............................................................................................94........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189784
..........GAGAACTGCTTGAACCCGGCATC.........................................................................................................................................................................................................................236.000.00------6.00----------------------------
.......................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGG..................................................334.000.003.001.00---------------------------------
.......CAGGAGAACTGCTTGAACACTG.............................................................................................................................................................................................................................224.000.00-------3.00--------------------1.00------
......................................................ATTGCACCACTGCACTCCAACCGGGC..........................................................................................................................................................................263.000.003.00----------------------------------
.................................................................................................................................................GGCTATTTAGGCTTTATTG......................................................................................192.000.00---------2.00-------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTATT....................................................332.000.00-1.00-1.00-------------------------------
...........AGAACTGCTTGAACCCGG.............................................................................................................................................................................................................................1802.002.00-----2.00-----------------------------
.............AACTGCTTGAACCCGGGAGGCGAGG....................................................................................................................................................................................................................252.000.002.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTCCC........................................................292.000.001.001.00---------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTCAAC..............................................................262.000.001.001.00---------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTTA...........................................................291.000.00-1.00---------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTTCTGC.........................................................301.000.001.00----------------------------------
..................................................................................................CAAAAAAAAAAAAAAAGATCACG.................................................................................................................................231.000.00----------------1.00------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAG...................................................351.000.00----1.00------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTCCC.............................................................271.000.001.00----------------------------------
.............................................................................................................................................................................................................TCTCTGTCGCCCAGGCTGGGGCG......................231.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTGCT......................................................311.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTCGAG...........................................................261.000.001.00----------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTTGGG.........................................................311.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTGCG............................................................271.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTGCA......................................................321.000.00-1.00---------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTAACT........................................................301.000.001.00----------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCAAG.........................................................271.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTCAG............................................................271.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTCACG.......................................................311.000.00----1.00------------------------------
............................................................................................................................................................CTTTCTATTTCTGTTTTTTCACT.......................................................................231.000.001.00----------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTAATACAAG...............................................341.000.00--------1.00--------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTAGGG.......................................................301.000.00-1.00---------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTAATAGGAGAG.............................................301.000.00---1.00-------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTAGAG.........................................................271.000.001.00----------------------------------
....................TGAACCCGGGAGGCGGAGGTTGCAGGAGG.........................................................................................................................................................................................................291.000.00-1.00---------------------------------
.................................................................................................................................................GGCTATTTAGGCTTTATGA......................................................................................191.000.00-------------------1.00---------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTCCC...........................................................281.000.001.00----------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTTTTAATAGGGCTC.............................................281.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTGGG....................................................331.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTAGG.........................................................291.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTT....................................................331.000.001.00----------------------------------
.............AACTGCTTGAACCCGGGAGGC........................................................................................................................................................................................................................2101.001.00-----1.00-----------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCCAG.........................................................271.000.00---1.00-------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTAACT.................................................................231.000.00-1.00---------------------------------
............................................................................................................................................................................................................TTCTCTGTCGCCCAGGCTGGAGTGCGGC..................281.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTATTT.....................................................321.000.00-------------1.00---------------------
.CTGAGGCAGGAGAACTGCTTGAACCCGGAAAT.........................................................................................................................................................................................................................321.000.00---1.00-------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTAATACAAA...............................................341.000.00--------------1.00--------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTCCGC............................................................281.000.001.00----------------------------------
..............ACTGCTTGAACCCGGGAGGCGGAGGGCGC...............................................................................................................................................................................................................291.000.00-1.00---------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTGGC.........................................................291.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTATAG........................................................291.000.00---1.00-------------------------------
...............................................................................................................................................................TCTATTTCTGTTTTTTTTTTTTTTTTTGTTG............................................................311.000.001.00----------------------------------
.......................ACCCGGGAGGCGGAGGTTGCAGACGG.........................................................................................................................................................................................................261.000.001.00----------------------------------
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCGCAG............271.000.001.00----------------------------------
.......................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACT.................................................341.000.00---1.00-------------------------------
........................CCCGGGAGGCGGAGGTTGCAGTCA..........................................................................................................................................................................................................241.000.00------------1.00----------------------
..............ACTGCTTGAACCCGGGAGGCGGAGGTTGCCATG...........................................................................................................................................................................................................331.000.00-1.00---------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTCTTT.........................................................311.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTCGAG..............................................................241.000.001.00----------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTAATAGGGGATG............................................231.000.00-1.00---------------------------------
....................TGAACCCGGGAGGCGGAGGATCC...............................................................................................................................................................................................................231.000.00-1.00---------------------------------
..............................................AAACCGAGATTGCACCACTGCACTG...................................................................................................................................................................................251.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTATAT.....................................................321.000.00---1.00-------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTCGCT..............................................................241.000.001.00----------------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTAATAGAATT..............................................321.000.00-------------1.00---------------------
..TGAGGCAGGAGAACTGCTTGAACCATG.............................................................................................................................................................................................................................271.000.00-------1.00---------------------------
......................................................ATTGCACCACTGCACTCCAACGGGT...........................................................................................................................................................................251.000.001.00----------------------------------
.........GGAGAACTGCTTGAACGCTG.............................................................................................................................................................................................................................201.000.00-----------------1.00-----------------
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCGTGG............271.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTGCG..............................................................251.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTCGC..........................................................271.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTCTGC............................................................261.000.001.00----------------------------------
....................TGAACCCGGGAGGCGGTG....................................................................................................................................................................................................................181.000.00-----1.00-----------------------------
...........AGAACTGCTTGAACCCGGGAGG.........................................................................................................................................................................................................................2201.001.00------------1.00----------------------
..................CTTGAACCCGGGAGGCGGAGGTA.................................................................................................................................................................................................................231.000.00-----------------------1.00-----------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTAGTC........................................................291.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTCGG......................................................311.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTCAAC.........................................................281.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTGATT.....................................................321.000.00---1.00-------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTGAGC.............................................................251.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTCCTG....................................................331.000.00---1.00-------------------------------
......................................................ATTGCACCACTGCACTCCAACCGGC...........................................................................................................................................................................251.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTCAAC..........................................................271.000.00-1.00---------------------------------
......................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGCTAAGT...........251.000.00-------1.00---------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTCCC..........................................................281.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTAGGG......................................................311.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTCTTC............................................................271.000.001.00----------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTTCTTT......................................................301.000.001.00----------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTCCC...........................................................291.000.00-1.00---------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTTTCC.........................................................311.000.001.00----------------------------------
..............ACTGCTTGAACCCGGGAG..........................................................................................................................................................................................................................1801.001.00----------1.00------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTAGAG.......................................................301.000.00-1.00---------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTGC...............................................................251.000.001.00----------------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTAATACACG...............................................311.000.00--------1.00--------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTAAC...........................................................291.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTTTTCTTT.......................................................321.000.001.00----------------------------------
............................................................................................................................................................................................................TTCTCTGTCGCCCAGGCTGGAGTGCAGCGGC...............311.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTCATC............................................................251.000.00-1.00---------------------------------
.............................................................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAGTGCAGTCATG..............311.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTCCTC..........................................................271.000.001.00----------------------------------
......................AACCCGGGAGGCGGAGGATGC...............................................................................................................................................................................................................211.000.00-----------1.00-----------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTGCC............................................................281.000.00-1.00---------------------------------
.................................................................................................................................................................TATTTCTGTTTTTTTTTTTTCATA.................................................................241.000.00-------------------------1.00---------
..............ACTGCTTGAACCCGGGAGGCGAGG....................................................................................................................................................................................................................241.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTTTTTTCTT......................................................331.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTCTGC.........................................................291.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTCAAC............................................................251.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTATAG......................................................311.000.00---1.00-------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTCTTG.....................................................321.000.00-1.00---------------------------------
.............AACTGCTTGAACCCGGGAGA.........................................................................................................................................................................................................................201.000.00---------------1.00-------------------
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCGTT.............261.000.00-1.00---------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTGCG..........................................................281.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTCCCC...........................................................261.000.00-1.00---------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTAATAGCTAT..............................................311.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTAAC.........................................................281.000.00-1.00---------------------------------
........................................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTTTTTAACCAG.................................................331.000.001.00----------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTTTTTGGCC...................................................331.000.00----1.00------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTTTTAAC.......................................................331.000.001.00----------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTTTATTT.....................................................311.000.00---1.00-------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTCGGG............................................................261.000.001.00----------------------------------
.......................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTTTTTATACG..................................................331.000.00---1.00-------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTGGG........................................................301.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTGGG......................................................311.000.001.00----------------------------------
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCGTC.............261.000.00-1.00---------------------------------
.................GCTTGAACCCGGGAGGCGGAGGA..................................................................................................................................................................................................................231.000.00-----1.00-----------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTCTA...........................................................291.000.00-------------1.00---------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTCCG..........................................................271.000.00---1.00-------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTAGC........................................................301.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTCGCC...........................................................261.000.00---1.00-------------------------------
..............................AGGCGGAGGTTGCAGTAGTCC.......................................................................................................................................................................................................211.000.00--------------------1.00--------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTCTTC.........................................................281.000.00---1.00-------------------------------
.........GGAGAACTGCTTGAACACTG.............................................................................................................................................................................................................................201.000.00-----------------1.00-----------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTTGAC.........................................................311.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTATTG...................................................341.000.00--------------1.00--------------------
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCGCGG............271.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTCGG..........................................................281.000.00---1.00-------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTCTT.......................................................301.000.00---1.00-------------------------------
......................................................ATTGCACCACTGCACTCCAACCCGC...........................................................................................................................................................................251.000.001.00----------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTGGAA.............................................................261.000.001.00----------------------------------
..........GAGAACTGCTTGAACCCGGG............................................................................................................................................................................................................................2001.001.00-----------1.00-----------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTATG.........................................................281.000.001.00----------------------------------
.......CAGGAGAACTGCTTGAACCCGGG............................................................................................................................................................................................................................2301.001.00------------1.00----------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTGGCT........................................................301.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTACAG.........................................................281.000.001.00----------------------------------
......................................................................................................................................................................................TTTTTTTTTTTTTAATAGGGGATG............................................241.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTCCCC......................................................311.000.001.00----------------------------------
.............................................................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAACGC.....................241.000.001.00----------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTCTCC..............................................................261.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTGTT........................................................291.000.00-1.00---------------------------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTTTTCTT........................................................311.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTACC....................................................331.000.00--------1.00--------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTCCC..................................................................221.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTCTGG............................................................261.000.00-----------------------------1.00-----
................................................................................................................................................GGGCTATTTAGGCTTTATGA......................................................................................201.000.00----------------------1.00------------
...................................................................................................................................................................TTTCTGTTTTTTTTTTTTTTTTTTTTCG...........................................................281.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTATT......................................................311.000.00-1.00---------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTCGGT............................................................251.000.001.00----------------------------------
.............................................................................................................................................................................................TTTTTTAATAGGGTCGGGT..........................................191.000.00--------------------------------1.00--
...................................................................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGCTCTG............271.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTGGG........................................................291.000.001.00----------------------------------
......................AACCCGGGAGGCGGAGGTTGCCAGG...........................................................................................................................................................................................................251.000.00-1.00---------------------------------
.......................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTTTTTATGG...................................................321.000.00-1.00---------------------------------
.............................................................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAGTGCAGGCA................291.000.001.00----------------------------------
..................................................................................................................................................................ATTTCTGTTTTTTTTTTTTTTTTTTTTCCCT.........................................................311.000.001.00----------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTAATAGGGTG..............................................341.000.00----1.00------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTCCAT.....................................................331.000.00----1.00------------------------------
......................................................................................................................ATTTGGAACCTTGTTTT...................................................................................................................1740.250.25---------------------------------0.25-
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTTAAT....................................................3340.250.25----0.25------------------------------
....................................................................................AGAGTGAGACTTTTCA......................................................................................................................................................1680.120.12----------------------------------0.12

Antisense strand
GCTGAGGCAGGAGAACTGCTTGAACCCGGGAGGCGGAGGTTGCAGTAAACCGAGATTGCACCACTGCACTCCAACCTGTGCAACAGAGTGAGACTTTTCAAAAAAAAAAAAAAAGATCATTTGGAACCTTGTTTTAAGGATATGGGGCTATTTAGGCTTTCTATTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGGGTCTTCTCTGTCGCCCAGGCTGGAGTGCAGTGCTGCAGTCGTGGCTCAC
...............................................................................................................((((......(((..((.((((.....)))).))..)))......))))..........................................................................................
.............................................................................................94........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189784
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAG........................................................ 2805.005.00--5.00--------------------------------
........................CCCGGGAGGCGGAGGTTGCAGTACTG........................................................................................................................................................................................................ 263.000.003.00----------------------------------
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAG....................................................... 2903.003.00--3.00--------------------------------
...................................................................................................AAAAAAAAAAAAAAAGATCATAGTT.............................................................................................................................. 252.000.002.00----------------------------------
........................................................GTTGGAGTGCAGTGGTGCA............................................................................................................................................................................... 1902.002.00-----1.00---------1.00-------------------
.......................ACCCGGGAGGCGGAGGTTGCAGTCG.......................................................................................................................................................................................................... 252.000.002.00----------------------------------
.....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAGA........................................................ 2902.002.00--2.00--------------------------------
...............CCTCCCGGGTTCAAGCAG......................................................................................................................................................................................................................... 1802.002.00----------2.00------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTTTTTCA..................................................... 311.000.00--1.00--------------------------------
....................................................................................................AAAAAAAAAAAAAAGATCATGGG............................................................................................................................... 231.000.00-1.00---------------------------------
.............AACTGCTTGAACCCGGACC.......................................................................................................................................................................................................................... 191.000.00--------------------------1.00--------
....................................................................................................................................................................................................ATAGGGTCTTCTCTGTGTG................................... 191.000.00-1.00---------------------------------
..........................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGAGA........... 211.000.00-1.00---------------------------------
.......................ACCCGGGAGGCGGAGGTTGCAGTCGA......................................................................................................................................................................................................... 261.000.00-1.00---------------------------------
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAGAA....................................................... 3101.001.00--1.00--------------------------------
........................CCCGGGAGGCGGAGGTTGCAGGTGA......................................................................................................................................................................................................... 251.000.00------------------------1.00----------
........................CCCGGGAGGCGGAGGTTGCAGTACGG........................................................................................................................................................................................................ 261.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTT......................................................... 291.000.00--1.00--------------------------------
.....................................................................................................AAAAAAAAAAAAAGATCATAG................................................................................................................................ 211.000.00-1.00---------------------------------
........................CCCGGGAGGCGGAGGTTGCAGTAACTTG...................................................................................................................................................................................................... 281.000.001.00----------------------------------
..................................................................................................CAAAAAAAAAAAAAAAGATCATGTT............................................................................................................................... 251.000.001.00----------------------------------
........................CCCGGGAGGCGGAGGTTGCAGTACC......................................................................................................................................................................................................... 251.000.001.00----------------------------------
..............................................................................................................................................................................................TTTTTAATAGGGTCTTGGTG........................................ 201.000.00---------------------1.00-------------
................................................................................................TTCAAAAAAAAAAAAAAAGATCAGG................................................................................................................................. 251.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTTT....................................................... 311.000.00--1.00--------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTTGCCC.................................................... 341.000.00-------------------------------1.00---
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTTTCA...................................................... 311.000.00--1.00--------------------------------
.......................................................................................................AAAAAAAAAAAGATCATAC................................................................................................................................ 191.000.001.00----------------------------------
.....................................................................................................................................................................TCTGTTTTTTTTTTTTTTTTTTTTTTTCGGG...................................................... 311.000.00--1.00--------------------------------
.........................................................................................................................................................................................................GTCTTCTCTGTCGCCGC................................ 171.000.00---------1.00-------------------------
...................................................................................................AAAAAAAAAAAAAAAGATCACGAC............................................................................................................................... 241.000.001.00----------------------------------
.................................................................................................TCAAAAAAAAAAAAAAAGATTCC.................................................................................................................................. 231.000.00-1.00---------------------------------
.......................ACCCGGGAGGCGGAGGTTGCAGTCGG......................................................................................................................................................................................................... 261.000.001.00----------------------------------
................................................................................................TTCAAAAAAAAAAAAAAAGACG.................................................................................................................................... 221.000.001.00----------------------------------
.......CAGGAGAACTGCTTGAACGCA.............................................................................................................................................................................................................................. 211.000.00------------------------------1.00----
...........................................................................................GACTTTTCAAAAAAAAAAAAAAAGG...................................................................................................................................... 251.000.00---1.00-------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTAATAGGTGG.............................................. 291.000.00----1.00------------------------------
.........................CCGGGAGGCGGAGGTTGCAGTCCC......................................................................................................................................................................................................... 241.000.001.00----------------------------------
.............................................................CACTGCACTCCAACCTGTTTG........................................................................................................................................................................ 211.000.00------------------1.00----------------
.......................................................................................................AAAAAAAAAAAGATCATAGTT.............................................................................................................................. 211.000.00-1.00---------------------------------
..........................................................CACCACTGCACTCCAACCTGTATC........................................................................................................................................................................ 241.000.001.00----------------------------------
..........................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGCGC........... 211.000.00-1.00---------------------------------
.........................................................................................................AAAAAAAAAGATCATACA............................................................................................................................... 181.000.001.00----------------------------------
................................................................................................................................................................................................................CTGTCGCCCAGGCTGGAGTGCAGTGCGGGG............ 301.000.001.00----------------------------------
..........................................................CACCACTGCACTCCAACCTGTA.......................................................................................................................................................................... 221.000.00------------------1.00----------------
..............ACTGCTTGAACCCGGGAGGCGGACTCC................................................................................................................................................................................................................. 271.000.001.00----------------------------------
......................................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTTTTTCGCT................................................... 331.000.00----------------1.00------------------
......................................................................................................AAAAAAAAAAAAGATCATAGT............................................................................................................................... 211.000.00-1.00---------------------------------
...............................................................CTGCACTCCAACCTGTGCAACGGC................................................................................................................................................................... 241.000.001.00----------------------------------
................................................................................................TTCAAAAAAAAAAAAAAAGATCGG.................................................................................................................................. 241.000.00-1.00---------------------------------
.....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAGA....................................................... 3001.001.00--1.00--------------------------------
..................................................................................................CAAAAAAAAAAAAAAAGATCAGC................................................................................................................................. 231.000.001.00----------------------------------
.............................................................CACTGCACTCCAACCTGTGCAACG..................................................................................................................................................................... 241.000.00-1.00---------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTAATATT................................................. 321.000.00---------------------------1.00-------
...........................................................................................................................................................................................................................GCTGGAGTGCAGTGCTGCAGGGC........ 231.000.001.00----------------------------------
..................................................................................................CAAAAAAAAAAAAAAAGATCGGG................................................................................................................................. 231.000.001.00----------------------------------
................TGCTTGAACCCGGGAGGCGGAGGTTGTCTC............................................................................................................................................................................................................ 301.000.00-1.00---------------------------------
.........................CCGGGAGGCGGAGGTTGCAGTACCTC....................................................................................................................................................................................................... 261.000.00-1.00---------------------------------
..................................................................................................CAAAAAAAAAAAAAAAGATCCAT................................................................................................................................. 231.000.001.00----------------------------------
....................................................................................................AAAAAAAAAAAAAAGATCATAGGG.............................................................................................................................. 241.000.00-1.00---------------------------------
............................................................................................ACTTTTCAAAAAAAAAAAAAAGGGT..................................................................................................................................... 251.000.00-1.00---------------------------------
.........................CCGGGAGGCGGAGGTTGCAGTC........................................................................................................................................................................................................... 221.000.00-----------1.00-----------------------
.................................................................................................TCAAAAAAAAAAAAAAAGATCATTC................................................................................................................................ 251.000.001.00----------------------------------
....................................................................................................................................................................TTCTGTTTTTTTTTTTTTTTTTTTTTTTTTG....................................................... 311.000.00--1.00--------------------------------
...................................................................................................AAAAAAAAAAAAAAAGATCACGG................................................................................................................................ 231.000.001.00----------------------------------
.....................................................................................................AAAAAAAAAAAAAGATCATCG................................................................................................................................ 211.000.00--------1.00--------------------------
....................................................................................................AAAAAAAAAAAAAAGATCATGGC............................................................................................................................... 231.000.001.00----------------------------------
........................ATCTCGGTTTACTGCAACCTCCGCCTCCCGGG.................................................................................................................................................................................................. 3260.330.330.170.17---------------------------------
........................TCGGTTTACTGCAACCTCCGCCTCCCGGG..................................................................................................................................................................................................... 2970.290.29-0.29---------------------------------
.........................ATCTCGGTTTACTGCAACCTCCGCCTCCCGG.................................................................................................................................................................................................. 3170.290.290.29----------------------------------
............................................................ACTCTGTTGCACAGGTTGGAGTGCAGTGG................................................................................................................................................................. 2990.110.11-0.11---------------------------------