ID: uc002yux.1_intron_10_0_chr21_37431272_r.5p
GENE: (1)
chr21:37432445-37432694-


(4)
B-CELL 		(4)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGGGCCCGCCCACTGCAGCCTCCATCTTGGAAGCGGCCGCCGGCGCCTAGGTGAGCTAGTAGGACTTCCGGGTCGGGCCTCCAGTTGCCCGGGTAACGGGAGCAGAGTCGGCGGGGTGCGTTCCTTAGTCTTTCATTCATCAGCGTAAAAAGAACTGAGTTTAGGTCGCAGGTCCCCTCCAGGGCAGGCATTATCGTGTGCGCTGCAGTAACCTCTCATCTTGTGGAGTCCTACACTTAGCGCATGTTGC
...............................................................................................((..((((.(((..(((((((......)))).))).))).....((((...........))))))))..))....................................................................................
...............................................................................................96.......................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..................................................................................................................................................AAAAAGAACTGAGTTTAGG.....................................................................................19115.0015.0015.00---------------------------
...........................................................................................................................................TCAGCGTAAAAAGAACTG.............................................................................................1817.007.007.00---------------------------
....................................................................................................AGCAGAGTCGGCGGGGTG....................................................................................................................................1814.004.00--2.00-1.00-------------1.00---------
.......................................................CTAGTAGGACTTCCGGG..................................................................................................................................................................................1712.002.00-1.00-1.00------------------------
................................................AGGTGAGCTAGTAGGACTTC......................................................................................................................................................................................2012.002.00-2.00--------------------------
............................................................................................................................................................GAGTTTAGGTCGCAGGTC............................................................................1812.002.00-2.00--------------------------
...........................................................TAGGACTTCCGGGTCGGGC............................................................................................................................................................................1912.002.002.00---------------------------
..................................................................TCCGGGTCGGGCCTCCA.......................................................................................................................................................................1712.002.00------2.00---------------------
.............................................................................................................................................AGCGTAAAAAGAACTGAGTT.........................................................................................2011.001.00---1.00------------------------
....................................................................................................AGCAGAGTCGGCGGGGTGCG..................................................................................................................................2011.001.00------------------------1.00---
..................................................GTGAGCTAGTAGGACTTCCGG...................................................................................................................................................................................2111.001.00--------1.00-------------------
.................................................................................................GGGAGCAGAGTCGGCGGGGTGCGTTCCTTA...........................................................................................................................3011.001.00-------------1.00--------------
..................................GGCCGCCGGCGCCTAGCGG.....................................................................................................................................................................................................191.000.00-----------1.00----------------
.....................................................................................................GCAGAGTCGGCGGGGTGCG..................................................................................................................................1911.001.00----------------------1.00-----
.............................................................................................................................................AGCGTAAAAAGAACTGAGTTTAG......................................................................................2311.001.00---------1.00------------------
.............................................................................................................................................AGCGTAAAAAGAACTGAG...........................................................................................1811.001.00-------------------1.00--------
....................................................GAGCTAGTAGGACTTCCG....................................................................................................................................................................................1811.001.00------------1.00---------------
...................................................................................................GAGCAGAGTCGGCGGGGTGC...................................................................................................................................2011.001.00----------------1.00-----------
..................................................GTGAGCTAGTAGGACTTCCGGGTCGG..............................................................................................................................................................................2611.001.00--1.00-------------------------
........................................................................................................GAGTCGGCGGGGTGCGTTCCTTA...........................................................................................................................2311.001.00---------------1.00------------
....................................................GAGCTAGTAGGACTTCCGG...................................................................................................................................................................................1911.001.00---------------------1.00------
.........................................................................................................................................................ACTGAGTTTAGGTCGCAGGTC............................................................................2111.001.00--------1.00-------------------
..............................................................................................................................................................................................TTATCGTGTGCGCTGCAGTAACCTCTC.................................2711.001.00-----1.00----------------------
.....................................................AGCTAGTAGGACTTCAAA...................................................................................................................................................................................181.000.00--------------1.00-------------
.....................................................................................TGCCCGGGTAACGGGAGCAGAGTCGGC..........................................................................................................................................2711.001.00-----------------------1.00----
...........................................................................................................................................TCAGCGTAAAAAGAACTGAG...........................................................................................2011.001.00----1.00-----------------------
.................................CGGCCGCCGGCGCCTAGGTG.....................................................................................................................................................................................................2011.001.00----------1.00-----------------
..........................TTGGAAGCGGCCGCCGGCGCCTAGAACT....................................................................................................................................................................................................281.000.00-----1.00----------------------
............................................................................................................................................................GAGTTTAGGTCGCAGGTCC...........................................................................1911.001.00---1.00------------------------
...............................................................ACTTCCGGGTCGGGC............................................................................................................................................................................1520.500.50-------------------------0.50--
....................................................................CGGGTCGGGCCTCCA.......................................................................................................................................................................1530.330.33--------------------------0.33-

Antisense strand
TGGGCCCGCCCACTGCAGCCTCCATCTTGGAAGCGGCCGCCGGCGCCTAGGTGAGCTAGTAGGACTTCCGGGTCGGGCCTCCAGTTGCCCGGGTAACGGGAGCAGAGTCGGCGGGGTGCGTTCCTTAGTCTTTCATTCATCAGCGTAAAAAGAACTGAGTTTAGGTCGCAGGTCCCCTCCAGGGCAGGCATTATCGTGTGCGCTGCAGTAACCTCTCATCTTGTGGAGTCCTACACTTAGCGCATGTTGC
...............................................................................................((..((((.(((..(((((((......)))).))).))).....((((...........))))))))..))....................................................................................
...............................................................................................96.......................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................................TCGGGCCTCCAGTTGACCC............................................................................................................................................................... 192.000.00-------2.00--------------------
........................................................................TCGGGCCTCCAGTTGACAA............................................................................................................................................................... 191.000.00--1.00-------------------------
.......GCCCACTGCAGCCTCCATAAG.............................................................................................................................................................................................................................. 211.000.00-----------------1.00----------
..........................................................................................................................................................................................................................AAGTGTAGGACTCCACAAGA............ 2011.001.00--------------------1.00-------
.....................................................................................................................................................................GGAGGGGACCTGCGA...................................................................... 1540.250.25---------------------------0.25