ID: uc002yjy.1_intron_22_0_chr21_17250311_f
GENE: USP25(23)
chr21:17250261-17250671+


(2)
B-CELL 		(2)
BRAIN 		(12)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(6)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
AGAAGATATGAGAAATCGATGGTGTTCCTACCTTGGTCAAGAAATGGAACGTAAGTTTAAACAATGGTAGTAGGCACCTGAGATGTCCGGATTAAATGCAGTTAGAATTAGATGTTATTTATTCTTGCCATTTTTTATATTAAATACAATATTAAGTATTAATATTTTCACATTCACATGATTACTCTTTTTCCATATTGATGAACTAAGCTGTGTGCATTGCAGTTGCCATTTATGTTTTTGTCTCCCCAAAATGGCAATTATCTTACCTATTAGAGTAAGTTAATATTAGTAAATCATGTTGACAATGATCGTGTAATAATTTCTATCTTTAGTTAGATTTAATTGTTTGTATTTGCAGCACACCTCCAAGAAAAGCTGACAGATTTTTTGCCAAAACTGCTTGATTGT
.................................................................................................................................................................................................................((...(((((..(((((((((((((.((............)))))))))....((((.....(((((((..((....(((((....(((((.......)))))....)))))....))..))))))).))))..)))))).)))))..))....................................................
.................................................................................................................................................................................................................210....................................................................................................................................................361................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR037937(GSM510475)
293cand2. (cell line)		SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191446(GSM715556)
140genomic small RNA (size selected RNA from . (breast)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATTG..................................................................................................................................................................................19358.671.0030.0019.671.00-5.00------0.33--------------------------0.330.33--0.33-----0.330.33--0.33--0.330.33--
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATT...................................................................................................................................................................................18318.671.000.670.671.679.67---1.00--0.67--------------------0.670.670.33--0.330.33---0.33-0.330.33-0.330.33------0.33----
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCTTGC.................................................................................................................................................................................2011.000.00-1.005.00--------1.00----1.00-1.00-1.00--------1.00-----------------------------
............................................................................................................................................................................TTCACATGATTACTCTTTTTCCATATTGATGAAC.............................................................................................................................................................................................................3414.004.00-----3.00--1.00--------------------------------------------------
................................TTGGTCAAGAAATGGAACC........................................................................................................................................................................................................................................................................................................................................................................1913.002.00-------------1.001.00--1.00-----------------------------------------
..AAGATATGAGAAATCGATGGTGTTCCTAC............................................................................................................................................................................................................................................................................................................................................................................................2913.003.00------3.00----------------------------------------------------
............................................................................................................................................................................TTCACATGATTACTCTTTTTCCATATTGATGA...............................................................................................................................................................................................................3212.002.00-----2.00-----------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCTT...................................................................................................................................................................................182.000.00-------1.00--1.00------------------------------------------------
................................TTGGTCAAGAAATGGAAC.........................................................................................................................................................................................................................................................................................................................................................................1812.002.00-----------------------1.00----1.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CCTCCAAGAAAAGCTGACAGATTT......................2412.002.00------2.00----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GTTTGTATTTGCAGCACACCTCCAAG......................................2612.002.00---------2.00-------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCACTG..................................................................................................................................................................................1931.671.001.00-0.33--------0.33-----------------------------------------------
.....................................................................................TCCGGATTAAATGCAGTTAGAATTAGATGTTA......................................................................................................................................................................................................................................................................................................3211.001.00---------------1.00-------------------------------------------
..AAGATATGAGAAATCGATGGTGT..................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------1.00--------------------------------
..................ATGGTGTTCCTACCTTGGTCAAGAAACG.............................................................................................................................................................................................................................................................................................................................................................................281.000.00------------------------------1.00----------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCAGTG..................................................................................................................................................................................1931.001.001.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TAGATTTAATTGTTTGTATTTGCAG..................................................2511.001.00-------------------------1.00---------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................AAGCTGACAGATTTTCTAG.................191.000.001.00----------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGC......................................................................................................................................................................................1531.001.00--------------------------------------------------0.330.33-0.33-----
................................................................................AGATGTCCGGATTAAG...........................................................................................................................................................................................................................................................................................................................161.000.00---------------------------1.00-------------------------------
...............................................................................................................................CCATTTTTTATATTAAATACAATATTAAG...............................................................................................................................................................................................................................................................2911.001.00----1.00------------------------------------------------------
..................................................................................ATGTCCGGATTAAATG.........................................................................................................................................................................................................................................................................................................................1611.001.00------------------------1.00----------------------------------
...................................................................................................................TATTTATTCTTGCCATCTC.....................................................................................................................................................................................................................................................................................191.000.00----------------------1.00------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CCTCCAAGAAAAGCTGACAGAT........................2211.001.00---------------------1.00-------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCTTAC.................................................................................................................................................................................201.000.00-------------------1.00---------------------------------------
............................................................................................................................................................................TTCACATGATTACTCTTTTTCCATATTGATG................................................................................................................................................................................................................3111.001.00--------1.00--------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCTTG..................................................................................................................................................................................191.000.001.00----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGCCAAAACTGCTTG.....1911.001.00-1.00---------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCTTCC.................................................................................................................................................................................201.000.00--1.00--------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCCCTG..................................................................................................................................................................................191.000.001.00----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TTGCAGCACACCTCCGC.......................................171.000.00--1.00--------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATGG..................................................................................................................................................................................1930.671.000.67----------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATCG..................................................................................................................................................................................1930.671.00-0.67---------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATTT..................................................................................................................................................................................1930.671.000.330.33---------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCAT....................................................................................................................................................................................1730.671.00-------0.33-------------------------------------0.33-------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCTGCA..................................................................................................................................................................................1930.671.00-0.330.33--------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATTA..................................................................................................................................................................................1930.671.000.330.33---------------------------------------------------------
.................................TGGTCAAGAAATGGAAC.........................................................................................................................................................................................................................................................................................................................................................................1720.500.50----------------------------------0.50------------------------
.................................TGGTCAAGAAATGGAACC........................................................................................................................................................................................................................................................................................................................................................................1820.500.50-----------------------------------0.50-----------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATAG..................................................................................................................................................................................1930.331.000.33----------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCAAT...................................................................................................................................................................................1830.331.00--0.33--------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCTGCT..................................................................................................................................................................................1930.331.00-0.33---------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCA.....................................................................................................................................................................................1630.331.00--0.33--------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATG...................................................................................................................................................................................1830.331.00---0.33-------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCAGTC..................................................................................................................................................................................1930.331.000.33----------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCTTTG..................................................................................................................................................................................1930.331.000.33----------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCATTC..................................................................................................................................................................................1930.331.00----------------------------------------0.33------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCACT...................................................................................................................................................................................1830.331.00-0.33---------------------------------------------------------
......................................................................................................................................................................................................................GTGCATTGCAGTTGCTTT...................................................................................................................................................................................1830.331.00---------------------------------0.33-------------------------
.................................TGGTCAAGAAATGGAA..........................................................................................................................................................................................................................................................................................................................................................................1640.250.25----------------------------------------------------------0.25
................................................................................................................TGTTATTTATTCTTGC...........................................................................................................................................................................................................................................................................................1640.250.25---------------------------------------------------------0.25-

Antisense strand
AGAAGATATGAGAAATCGATGGTGTTCCTACCTTGGTCAAGAAATGGAACGTAAGTTTAAACAATGGTAGTAGGCACCTGAGATGTCCGGATTAAATGCAGTTAGAATTAGATGTTATTTATTCTTGCCATTTTTTATATTAAATACAATATTAAGTATTAATATTTTCACATTCACATGATTACTCTTTTTCCATATTGATGAACTAAGCTGTGTGCATTGCAGTTGCCATTTATGTTTTTGTCTCCCCAAAATGGCAATTATCTTACCTATTAGAGTAAGTTAATATTAGTAAATCATGTTGACAATGATCGTGTAATAATTTCTATCTTTAGTTAGATTTAATTGTTTGTATTTGCAGCACACCTCCAAGAAAAGCTGACAGATTTTTTGCCAAAACTGCTTGATTGT
.................................................................................................................................................................................................................((...(((((..(((((((((((((.((............)))))))))....((((.....(((((((..((....(((((....(((((.......)))))....)))))....))..))))))).))))..)))))).)))))..))....................................................
.................................................................................................................................................................................................................210....................................................................................................................................................361................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR037937(GSM510475)
293cand2. (cell line)		SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040022(GSM532907)
G575N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191446(GSM715556)
140genomic small RNA (size selected RNA from . (breast)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
.................GGTAGGAACACCATC........................................................................................................................................................................................................................................................................................................................................................................................... 1521.501.50------------1.50----------------------------------------------
................................TTGGTCAAGAAATGGAAAAG....................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-1.00---------------------------------------------------------
................................................................................................................................................TACAATATTAAGTATCAG......................................................................................................................................................................................................................................................... 181.000.00-1.00---------------------------------------------------------