ID: uc002yjy.1_intron_21_0_chr21_17246846_f.5p
GENE: USP25(22)
chr21:17246796-17247045+


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(1)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(7)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
GAGGACATGATGAAGAATTGATATCACATTATAGAAGAGAATGTTTGCTAGTAAGTTGAATGCATATAGTATGATCTTATCATTTTGTCTGACATTGGGCAAGTTTTCCAGACTCATATATAAGTGATTGACTCCATAAACTCTGAGGGGATAAGAACATGATGATGTCTATAAACTGGTTCTAGTCCCTTCAGATGGAAAAGTACACTCAGTACTTTATTCTTTTCTCTTTATGAATCCCAAGTACTAT
..........................................................................................(((((((..((.(((((((...((((.......(((........)))......)))).)))...)))).)).))))))).................................................................................
.........................................................................................90.........................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040006(GSM532891)
G601N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
..........................................................................................................................................................GAACATGATGATGTCTATAAACT.........................................................................231318.00318.00212.00106.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAAC..........................................................................221265.00265.00167.0098.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAA...........................................................................211196.00196.00126.0070.00-------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAACT.........................................................................24182.0082.0043.0039.00-------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAAC..........................................................................23153.0053.0024.0029.00-------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAA...........................................................................22146.0046.0017.0029.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAACTGATT.....................................................................27137.0026.0025.0012.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAACTG........................................................................24126.0026.0013.0013.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAACTGAT......................................................................2619.0026.009.00--------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAACTGA.......................................................................2517.0026.005.002.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAA............................................................................2017.007.007.00--------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAACTG........................................................................2516.006.004.002.00-------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAACTGATT.....................................................................2813.006.003.00--------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAACTGA.......................................................................2612.006.00-2.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTAAACT...........................................................................212.000.00-2.00-------------------------------
..............................ATAGAAGAGAATGTTTGCTAGTAAGT..................................................................................................................................................................................................2612.002.00--2.00------------------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAACCT.........................................................................242.000.00-2.00-------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAATT.........................................................................2312.00196.001.001.00-------------------------------
.....................................................................................................................................................................................................................ACTTTATTCTTTTCTCTCCTG................211.000.00------1.00--------------------------
.......TGATGAAGAATTGATATCAC...............................................................................................................................................................................................................................2011.001.00--------1.00------------------------
...........................................................................................................................................................AACATGATGATGTCTATAAACTGATT.....................................................................261.000.00-1.00-------------------------------
...........................................................................................................................GTGATTGACTCCATAAACTCTGAGGGGATAAA...............................................................................................321.000.00------------1.00--------------------
..........................................................................................................................................AACTCTGAGGGGATAAGAACATGATGATG...................................................................................2911.001.00----1.00----------------------------
.....................................................................TATGATCTTATCATTTTGTCTGACATTGG........................................................................................................................................................2911.001.00----1.00----------------------------
.........................................................................................................................................AAACTCTGAGGGGATAAGAACAT..........................................................................................2311.001.00--------------1.00------------------
.........................................................................................................................................................AGAACATGATGATGTCTATAAACTGAT......................................................................2711.006.001.00--------------------------------
..............................................................................................................................................................ATGATGATGTCTATAAAC..........................................................................1821.001.00-1.00-------------------------------
.......................................................................................................................................................................................................................TTTATTCTTTTCTCTTTATATTT............231.000.00-----1.00---------------------------
...........................ATTATAGAAGAGAATGTT.............................................................................................................................................................................................................1821.001.00-----------------1.00---------------
.AGGACATGATGAAGAATTG......................................................................................................................................................................................................................................1911.001.00------------------1.00--------------
..........................................................................................................................................................GAACATGATGATGTCTATAAAGT.........................................................................2311.00196.001.00--------------------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAAA..........................................................................2211.00196.001.00--------------------------------
..................TGATATCACATTATAGAAGAGAATGTTTGC..........................................................................................................................................................................................................3011.001.00---------------------1.00-----------
..........................................................................................................................................................GAACATGATGATGTCTATAAACG.........................................................................2311.00265.001.00--------------------------------
...........................................................................................................................................................AACATGATGATGTCTATAAACT.........................................................................2211.001.001.00--------------------------------
.AGGACATGATGAAGAATTT......................................................................................................................................................................................................................................191.000.00---------------1.00-----------------
...........................................................................................................................................ACTCTGAGGGGATAAGAACATTA........................................................................................231.000.00-----------1.00---------------------
..........................................................................................................................................................GAACATGATGATGTCTATAAAATGA.......................................................................2511.00196.00-1.00-------------------------------
............................................................................................................................................................................................CTTCAGATGGAAAAGAGCC...........................................191.000.00----------------1.00----------------
....................................................................................................................................................................................................................................CTTTATGAATCCCAAGTAC...1911.001.00--------------------------1.00------
.................................GAAGAGAATGTTTGCTAAAAT....................................................................................................................................................................................................211.000.00---1.00-----------------------------
...............................................................................................................................TTGACTCCATAAACTCTGAGGGGATAAGA..............................................................................................2911.001.00---1.00-----------------------------
..............................................................................................TTGGGCAAGTTTTCCAGACT........................................................................................................................................2011.001.00--1.00------------------------------
..........................................................................................................................................................................................................................ATTCTTTTCTCTTTATTAG.............191.000.00-----1.00---------------------------
..........................CATTATAGAAGAGAATGTTTGCTA........................................................................................................................................................................................................2411.001.00------------------------1.00--------
.................................................................................................................................................AGGGGATAAGAACATGATA......................................................................................191.000.00-------------------------1.00-------
....................................................................................................................................................................................................................TACTTTATTCTTTTCGG.....................171.000.00----------------------------1.00----
...........................................................................................................................................................AACATGATGATGTCTATAAA...........................................................................2011.001.00-1.00-------------------------------
.....................TATCACATTATAGAAGAGAATGTTTGCTA........................................................................................................................................................................................................2911.001.00----------------------1.00----------
.....................................................................................................................................................................................................................ACTTTATTCTTTTCTCAATT.................201.000.00---------------------------1.00-----
................................AGAAGAGAATGTTTGCTA........................................................................................................................................................................................................1820.500.50-----------------------------0.50---
................................AGAAGAGAATGTTTGCTAA.......................................................................................................................................................................................................1920.500.50--0.50------------------------------

Antisense strand
GAGGACATGATGAAGAATTGATATCACATTATAGAAGAGAATGTTTGCTAGTAAGTTGAATGCATATAGTATGATCTTATCATTTTGTCTGACATTGGGCAAGTTTTCCAGACTCATATATAAGTGATTGACTCCATAAACTCTGAGGGGATAAGAACATGATGATGTCTATAAACTGGTTCTAGTCCCTTCAGATGGAAAAGTACACTCAGTACTTTATTCTTTTCTCTTTATGAATCCCAAGTACTAT
..........................................................................................(((((((..((.(((((((...((((.......(((........)))......)))).)))...)))).)).))))))).................................................................................
.........................................................................................90.........................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040006(GSM532891)
G601N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
........................................................................GATCTTATCATTTTGCCAC............................................................................................................................................................... 191.000.00-------------1.00-------------------
...........................................................................CTTATCATTTTGTCTCTGA............................................................................................................................................................ 191.000.00----------1.00----------------------
........................................................................................................................................................................................................................TTATTCTTTTCTCTTTATTAAA............ 221.000.00-------1.00-------------------------
...................................................................................................................................................................................................TGGAAAAGTACACTCAGACT................................... 201.000.00--------------------1.00------------