ID: uc002yip.1_intron_18_0_chr21_10970063_r.5p
GENE: TPTE(5)
chr21:10971092-10971341-


(2)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
LIVER 		(2)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GATCCGACTGACCTGGCGGGAGTCATCATTGAGCTCGGCCCCAATGACAGGTGAGTTATAAAAGATGTACACATGACCAGGTGCAATGGTTCACACCTGTAATCTGAGCACTTTGGGAGGCTGAAGCAGGCCGATACCCTGAGGTCGGGTGTTCGAGACCAGGCTGGCAAACATCGTGAAACCCTGTCTCTACTAAAACTACAAGAACTAGCCAGGTGTGGTGGCAGGTGCCTCTAATCCCAGCTACTCA
............................................................................................................................................((((..((((...(((..((.....))......)))....))))..))))............................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR343337SRR343336SRR343335SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
..............................................................................................................................................................................CGTGAAACCCTGTCTGAAT.........................................................19111.000.00110.00--------1.00----------------------
.............................................................................................................................................AGGTCGGGTGTTCGATTCA..........................................................................................1918.000.00-----5.006.005.002.00-----------------------
...................................................................................................TAATCTGAGCACTTTTTCG....................................................................................................................................197.000.00---7.00----------------------------
..............................................................................................................................................................................CGTGAAACCCTGTCTGAA..........................................................187.000.007.00-------------------------------
...................................................................................................TAATCTGAGCACTTTCTTG....................................................................................................................................193.000.00-----1.00--2.00-----------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGCCACC.....................242.000.00--2.00-----------------------------
...CCGACTGACCTGGCGGGA.....................................................................................................................................................................................................................................1812.002.00-------------------1.00----------1.00-
..............................................................................................................................................................................CGTGAAACCCTGTCTGAAC.........................................................192.000.001.00----------------------1.00--------
......................................................................................................................................................................................CCTGTCTCTACTAAAACTCTG...............................................212.000.00----------2.00---------------------
...................................................................................................TAATCTGAGCACTTTTCTG....................................................................................................................................192.000.00---2.00----------------------------
..............................................................................................................................................................................................................ACTAGCCAGGTGTGGTGGGAC.......................211.000.00-1.00------------------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGCAGGTGCTTG................291.000.00--1.00-----------------------------
...............................................................................................................TTTGGGAGGCTGAAGCAGCCGG.....................................................................................................................221.000.00-1.00------------------------------
..............................................................................................................................................................................CGTGAAACCCTGTCTGACT.........................................................191.000.00---------1.00----------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGCATGTC....................251.000.00--1.00-----------------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGGGGG......................231.000.00--1.00-----------------------------
..............................................................................................................................................................................................................ACTAGCCAGGTGTGGTGGAGGG......................221.000.00--1.00-----------------------------
...........................................................................................................................................................................................................AGAACTAGCCAGGTGTGGTGGCCC.......................241.000.00-1.00------------------------------
...................................................................................................TAATCTGAGCACTTTTTCA....................................................................................................................................191.000.00---1.00----------------------------
.........................................................................................................GAGCACTTTGGGAGGGCAC..............................................................................................................................191.000.00------------------------1.00-------
.................................................................................................................................................................................................................AGCCAGGTGTGGTGGCAGGTGCCCAC...............261.000.00--1.00-----------------------------
.............................................................................................................ACTTTGGGAGGCTGAAGCAGCCGG.....................................................................................................................241.000.00--1.00-----------------------------
.............................................................................................................................................AGGTCGGGTGTTCGAATC...........................................................................................181.000.00----------------------------1.00---
..............................................................................................................................................................................CGTGAAACCCTGTCTGA...........................................................171.000.00------------------1.00-------------
..............................................................................................................................................................................................................ACTAGCCAGGTGTGGTGGGGA.......................211.000.00-1.00------------------------------
....................................................................................................................................................GTGTTCGAGACCAGGACGT...................................................................................191.000.00------------1.00-------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGGAC.......................221.000.00-1.00------------------------------
.....................................................................................................................................................................................CCCTGTCTCTACTAAAACTCTG...............................................221.000.00---------------1.00----------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGGGG.......................221.000.00-1.00------------------------------
.......................................................................................................................GCTGAAGCAGGCCGAG...................................................................................................................161.000.00-----------1.00--------------------
......................................................................................................................................................................................................................................CCTCTAATCCCAGCTACTCTGTA231.000.00-----------1.00--------------------
..........................................................................................................................................CTGAGGTCGGGTGTTCGGGC............................................................................................201.000.00----------------------1.00---------
...................................................................................................TAATCTGAGCACTTTTTG.....................................................................................................................................181.000.00------------1.00-------------------
...................................................................................................TAATCTGAGCACTTTCTCG....................................................................................................................................191.000.00---1.00----------------------------
.................................................................................................................................................................................................................................AGGTGCCTCTAATCCCAGCAAAA..231.000.00--------------------------1.00-----
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGCAGGTGCCGGT...............301.000.00--1.00-----------------------------
.................................................................................................................TGGGAGGCTGAAGCAGGCCGGGG..................................................................................................................231.000.00-1.00------------------------------
.............................................................................................................ACTTTGGGAGGCTGAAGCAGGGGGC....................................................................................................................251.000.00-1.00------------------------------
.....................................................................................ATGGTTCACACCTGTAATCTCGGC.............................................................................................................................................241.000.00-1.00------------------------------
.........................................................................................TTCACACCTGTAATCTTCGG.............................................................................................................................................201.000.00---------------------1.00----------
..........................................................................................................................................................................ACATCGTGAAACCCTGTCTCTACTAAAAGC..................................................301.000.00-1.00------------------------------
.............................................................................................................................................................................................................AACTAGCCAGGTGTGGTGGGGGC......................231.000.00-1.00------------------------------
...............GCGGGAGTCATCATTGAGC........................................................................................................................................................................................................................1911.001.00--------------1.00-----------------
............................................................................................................................................................GACCAGGCTGGCAAACATCGTGA.......................................................................2320.500.50---------0.50----------------------
.................................................................................................................................................CGGGTGTTCGAGACCAGGCTGGCA.................................................................................2420.500.50-------------------------------0.50
..................................................................................................................................................................................................AAAACTACAAGAACTAGCCAGGTGT...............................2530.330.33--------------0.33-----------------
...........................................................................................................................................................................................................AGAACTAGCCAGGTGTGGTGGCA........................2380.250.25-0.25------------------------------

Antisense strand
GATCCGACTGACCTGGCGGGAGTCATCATTGAGCTCGGCCCCAATGACAGGTGAGTTATAAAAGATGTACACATGACCAGGTGCAATGGTTCACACCTGTAATCTGAGCACTTTGGGAGGCTGAAGCAGGCCGATACCCTGAGGTCGGGTGTTCGAGACCAGGCTGGCAAACATCGTGAAACCCTGTCTCTACTAAAACTACAAGAACTAGCCAGGTGTGGTGGCAGGTGCCTCTAATCCCAGCTACTCA
............................................................................................................................................((((..((((...(((..((.....))......)))....))))..))))............................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR343337SRR343336SRR343335SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
..................................................................................................................................................................................AAACCCTGTCTCTACTAAAAGA.................................................. 223.000.00----3.00---------------------------
..................................................................................................................................................................................AAACCCTGTCTCTACTAAAAG................................................... 213.000.00----3.00---------------------------
..................................................................................................................................................................................AAACCCTGTCTCTACTAGAA.................................................... 203.000.00----3.00---------------------------
............................................................................................................................................................................................................GAACTAGCCAGGTGTGGTGGCACTG..................... 252.000.00--2.00-----------------------------
..............................................................................................................................................................................................................................GGCAGGTGCCTCTAATCA.......... 181.000.00-----------------------------1.00--
...................................................................................................................................................................................................................CCAGGTGTGGTGGCAGGGGGG.................. 211.000.00--------------------1.00-----------
.....................................................................................................................................................................................CCCTGTCTCTACTAAAACTGTTC.............................................. 231.000.00-1.00------------------------------
.........................................................................................................................TGAAGCAGGCCGATACACT.............................................................................................................. 191.000.00---------------------------1.00----
.......................................................................................................................................................................................................TACAAGAACTAGCCAGGTGTGGTTTTC........................ 271.000.00-1.00------------------------------
.................................................................................................................................................................................................................AGCCAGGTGTGGTGGCAGGTGCCTTTG.............. 271.000.00--1.00-----------------------------
.....................................................................................................................................................TGTTCGAGACCAGGCTGGTA................................................................................. 201.000.00-------------1.00------------------
..........................................................................................................................................................................ACATCGTGAAACCCTGTCTCG........................................................... 211.000.00-1.00------------------------------
....................................................................................................................................................................................ACCCTGTCTCTACTAAGA.................................................... 181.000.00-------------------------1.00------
.........................................................................................................................................................................................................CAAGAACTAGCCAGGTGTGGTGGCA........................ 251.000.00-1.00------------------------------
..................................................................................................................................................................................AAACCCTGTCTCTACTAAAACTACAGCC............................................ 281.000.00--1.00-----------------------------
....................................................................................................................................................................................................................................TGCCTCTAATCCCAGCTACTCAAATC 261.000.00-------------1.00------------------
.................................................................................................................................................................................................................AGCCAGGTGTGGTGGCAGGTGCCTTG............... 261.000.00--1.00-----------------------------
..................................................................................................................................................................................................................GCCAGGTGTGGTGGCAGGTGCCTCTAAC............ 281.000.00-1.00------------------------------
.........................................................................................................................................................................................TTGTAGTTTTAGTAGAGAC.............................................. 1901.001.00----------------1.00---------------
.........................................................................................................................TGAAGCAGGCCGATACT................................................................................................................ 171.000.00-----------------1.00--------------