ID: uc002yhl.1_intron_6_0_chr20_62594794_r
GENE: ZNF512B(10)
chr20:62594744-62595020-


(1)
AGO2.ip
(1)
B-CELL
(4)
BRAIN
(7)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(5)
HEART
(1)
HELA
(1)
KIDNEY
(5)
LIVER
(2)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
AGTCCAAAGCCGGCCTCAACTACCACACTATGGCCGAGCACAGTGCCAAGGTACCGTCGGGCCCCCAGCTCCCGTCCAGCGTGACCTCTGACCTCGCACCCCACCTTCACCGCAGTGCCCCCGGTTTCTAACCTCGGACAACGGTGGCCCAACACCTGGGCGGGGCGGGGCCAGGGCAGGGCTCCGTGGCGATGGTGCCGGGTCACCGATGCTCACCCTGTCCCCAGCCCTCTGACGCCGAGGCCTCCGAAGGGGGCGAGCAGGAGGAGCGCGAGAG
.................................................................................................................................................................(((((((((...(((((.(((.((((....)))).)))((....))..))))).))))))))).....................................................
................................................................................................................................................................161...............................................................227................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR343335SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR343337SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCAGT.................................................23120.0011.002.001.00-5.00-2.00--1.00--2.00--2.00-------1.00------------1.00-------------1.00--1.00-1.00-------
..............................................................................................................................................................................................................CGATGCTCACCCTGTCCCCAGT.................................................2212.000.002.001.00----------------1.00-1.00----------1.00----1.00-1.00------1.001.00---1.00--1.00--------
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCAG..................................................22111.0011.004.006.00-------------------------1.00----------------------------------
.....................................................................................................................................................................CGGGGCCAGGGCAGGGCTCTGT..........................................................................................228.000.00--7.00--------------------------1.00--------------------------------
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCAGA.................................................2316.0011.00-----1.00----2.00----------1.00-----------------1.00---1.00------------------
.................AACTACCACACTATG.....................................................................................................................................................................................................................................................1555.605.60------2.202.20----------------1.00-----------------------------------0.20-
............................................................................................................................................................................................................ACCGATGCTCACCCTGTCCCCAGT.................................................245.000.005.00-------------------------------------------------------------
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCA...................................................2114.004.00-1.00--3.00---------------------------------------------------------
................................................................................................................................................................................................................................................................CGAGCAGGAGGAGCGCGAGA.2012.002.00---------2.00----------------------------------------------------
..................................................................................................................................................................................................................................................GCCTCCGAAGGGGGCGAGCAGGAGGA.........2612.002.00----------------2.00---------------------------------------------
...................................................................................................................................................................................GGCTCCGTGGCGATGTGGA...............................................................................192.000.00-------------1.00----------------1.00-------------------------------
..............................................................................................................................................................................................................CGATGCTCACCCTGTCCCCAGTT................................................231.000.00--------------------------------------------1.00-----------------
................................................................................................................................................................................................................ATGCTCACCCTGTCCCCTGTA................................................211.000.00-------------------------------------1.00------------------------
...........................................................GGCCCCCAGCTCCCGCGT........................................................................................................................................................................................................181.000.00-----------------------1.00--------------------------------------
.................................................................................................................................AACCTCGGACAACGGTGGCCC...............................................................................................................................2111.001.00-----------------1.00--------------------------------------------
..................................................................................................................................ACCTCGGACAACGGTGGCCC...............................................................................................................................2011.001.00---------------------------------------------------1.00----------
................................................................................................................................................................CGGGGCGGGGCCAGGGCCGGT................................................................................................211.000.00-------------------------1.00------------------------------------
...................................................................................................................................................................................GGCTCCGTGGCGATGTGG................................................................................181.000.00-------------1.00------------------------------------------------
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCAGTT................................................2411.0011.00----------------------------------------1.00---------------------
................................................................................................................................................................................................................ATGCTCACCCTGTCCCCAGTTAA..............................................231.000.00--------------------------------------------------------1.00-----
..............................................................................................................................................................................................................CGATGCTCACCCTGTCCCCAGA.................................................221.000.00-----------------------------------------1.00--------------------
..............................................................................................................................................................................................................CGATGCTCACCCTGTCCCCA...................................................2011.001.00--------1.00-----------------------------------------------------
...........................................................................................................................GTTTCTAACCTCGGACAACGGTGGCCCA..............................................................................................................................2811.001.00---------------1.00----------------------------------------------
.................................................................................................................................AACCTCGGACAACGGTGGCC................................................................................................................................2011.001.00-----------------------------------------------1.00--------------
..................................................................................................................................................................................................................................................GCCTCCGAAGGGGGCGA..................1711.001.00----------------------------1.00---------------------------------
................................................................................................................................................................................................................ATGCTCACCCTGTCCCCAGA.................................................201.000.00-1.00------------------------------------------------------------
.....AAAGCCGGCCTCAACTACCAC...........................................................................................................................................................................................................................................................2111.001.00------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................................................................AGGAGGAGCGCGAGAAGA181.000.00--------------------------------1.00-----------------------------
.................................................................................................................................AACCTCGGACAACGGTGGCCCAACA...........................................................................................................................2511.001.00-------------------------------------------------------1.00------
.....................................................................................................................................................................................................................................................TCCGAAGGGGGCGAGCGGT.............191.000.00-------------------1.00------------------------------------------
.............................................................................................................................................................................................................CCGATGCTCACCCTGTCCCCATT.................................................2311.004.00-1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................................AGGAGGAGCGCGAGAAGT181.000.00---------------------------------1.00----------------------------
..........................................................................................................................................................................CCAGGGCAGGGCTCCGTGGCGATGGTG................................................................................2711.001.00---------------1.00----------------------------------------------
.....................................GCACAGTGCCAAGGT.................................................................................................................................................................................................................................1570.290.29--------0.14----------------------------------------------------0.14

Antisense strand
AGTCCAAAGCCGGCCTCAACTACCACACTATGGCCGAGCACAGTGCCAAGGTACCGTCGGGCCCCCAGCTCCCGTCCAGCGTGACCTCTGACCTCGCACCCCACCTTCACCGCAGTGCCCCCGGTTTCTAACCTCGGACAACGGTGGCCCAACACCTGGGCGGGGCGGGGCCAGGGCAGGGCTCCGTGGCGATGGTGCCGGGTCACCGATGCTCACCCTGTCCCCAGCCCTCTGACGCCGAGGCCTCCGAAGGGGGCGAGCAGGAGGAGCGCGAGAG
.................................................................................................................................................................(((((((((...(((((.(((.((((....)))).)))((....))..))))).))))))))).....................................................
................................................................................................................................................................161...............................................................227................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR343335SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR343337SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...........................................................GGCCCCCAGCTCCCGGCC........................................................................................................................................................................................................ 181.000.00------------------------------------------1.00-------------------
...................................GAGCACAGTGCCAAGTCTG............................................................................................................................................................................................................................... 191.000.00--------------------------1.00-----------------------------------
......................................................................................................................................................................................................................ACCCTGTCCCCAGCCCTAC............................................ 191.000.00----------------------------------1.00---------------------------
...............................................................CCCAGCTCCCGTCCAGACAT.................................................................................................................................................................................................. 201.000.00------------1.00-------------------------------------------------
...............................................................CCCAGCTCCCGTCCAGACA................................................................................................................................................................................................... 191.000.00------------1.00-------------------------------------------------
............................................................GACGGGAGCTGGGGGC......................................................................................................................................................................................................... 1630.330.33---------------------------------------------------------0.33----
..............................................................CTGGACGGGAGCTGGGG...................................................................................................................................................................................................... 1740.250.25-----------------------------------------------------------0.25--
.....................................................................................................................................................................................................................................................................TCTCGCGCTCCTCCT. 1540.250.25----------------------------------------------------------0.25---