| (2) BREAST | (6) CELL-LINE | (3) CERVIX | (6) OTHER | (1) TESTES |
| ATTCCCATTTTAAACAATGGGAAAAGATAGTTAAAAAAAAACAAGGAAGATCTTTAAAAACATGAATTTATTTTGATACAACACTAAAATTTTAATTTTGATGTGTCTTTATTCCTAGGTTTACTGTTTATGCAAAGATAGATAAGTACATTCTTAAAATTATTAAAATGGAACTCTAATAAGTTCATTCCTTTTTTTACATGGTTGCCTGGTTTGAAAAATCCAAGGACATTATTCAGAGTCAAGGAAA ..........................................................................((((((....((((((....)))))).)))))).........(((..((((((((((......))))))).)))......................(((((......)))))...))).......................................................... ........................................................................73.............................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR343334 | SRR343335 | SRR343336 | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR189784 | SRR040037(GSM532922) G243T. (cervix) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040039(GSM532924) G531T. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | TAX577579(Rovira) total RNA. (breast) | SRR040024(GSM532909) G613N. (cervix) | SRR189785 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................ACAACACTAAAATTTTAG........................................................................................................................................................... | 18 | 5 | 73.20 | 1.80 | 30.40 | 26.00 | 7.80 | 7.80 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 0.20 |
| ..............................................................................CAACACTAAAATTTTAG........................................................................................................................................................... | 17 | 10.00 | 0.00 | 4.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................ACAACACTAAAATTTT............................................................................................................................................................. | 16 | 8 | 7.12 | 7.12 | 2.75 | 3.75 | 0.38 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................AAAAAAAAACAAGGAAGGGC...................................................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .............................................................................ACAACACTAAAATTTAG............................................................................................................................................................ | 17 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................ACAACACTAAAATTTTA............................................................................................................................................................ | 17 | 5 | 1.80 | 1.80 | 1.20 | 0.60 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................GTTCATTCCTTTTTTGCA.................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ......................................................................................................................................................................................GTTCATTCCTTTTTTGCAC................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................AAAAAAAAACAAGGAAGGGGT..................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................AAAAAAAACAAGGAAGGGCT..................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................TGAAAAATCCAAGGACATTATTCAGAGTC....... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...........................................................................................TTAATTTTGATGTGTCAC............................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ........................................................................................................................................................................................TCATTCCTTTTTTTAATAG............................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................CATTCCTTTTTTTACAT................................................ | 17 | 3 | 0.33 | 0.33 | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................ACAACACTAAAATTTTAGA.......................................................................................................................................................... | 19 | 5 | 0.20 | 1.80 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ATTCCCATTTTAAACAATGGGAAAAGATAGTTAAAAAAAAACAAGGAAGATCTTTAAAAACATGAATTTATTTTGATACAACACTAAAATTTTAATTTTGATGTGTCTTTATTCCTAGGTTTACTGTTTATGCAAAGATAGATAAGTACATTCTTAAAATTATTAAAATGGAACTCTAATAAGTTCATTCCTTTTTTTACATGGTTGCCTGGTTTGAAAAATCCAAGGACATTATTCAGAGTCAAGGAAA ..........................................................................((((((....((((((....)))))).)))))).........(((..((((((((((......))))))).)))......................(((((......)))))...))).......................................................... ........................................................................73.............................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR343334 | SRR343335 | SRR343336 | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR189784 | SRR040037(GSM532922) G243T. (cervix) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040039(GSM532924) G531T. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | TAX577579(Rovira) total RNA. (breast) | SRR040024(GSM532909) G613N. (cervix) | SRR189785 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................AAAAAAAACAAGGAAATTG...................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................AAAAAAAAACAAGGAAGATG...................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ........................................................AAAACATGAATTTATTTTGGA............................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..............................TTAAAAAAAAACAAGGAAATG....................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................CAAAGATAGATAAGTTTGG................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................TTAAAAAAAAACAAGGAAGC........................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |