ID: uc002xyz.2_intron_4_0_chr20_56928595_f.3p
GENE: (5)
chr20:56929012-56929261+


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(8)
CELL-LINE 		(6)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
ACTAGTGGTACCGAGTTTTGTTTCACTTTGTTTGTTTACCCATGGATGTGGTGTAATCGAGAAGACCATGTCTCAGGGCCCATCCAGCAGCCATTTAGTCCATCCTTTGTCATCATAAATCTGGTTAACTACTGGGTAGGTGGGGGTACAACTAAGATCTTCATGGGTAGAATTTCTGATATGTAGTTGTTGCCTTCCAGAGAAGTCATGGAGAGAGATGCAAAGGACTACGCCGACTCTATTCATGCAA
............................................................................................................................................((((((((((((((......(((.(((......))))))....))))))).)))).)))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................CAACTAAGATCTTCATGGGTAGAATTTCT.........................................................................29132.0032.0017.0015.00-------------------------------------------------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAAGG........................2015.005.00--3.00--------------1.00-----------------1.00---------------
..................................................................................................................................................................................ATATGTAGTTGTTGCCTTCCAGT.................................................2315.003.00---2.00-------------------1.00-----------------1.00--1.00------
...................................................................................................................................................................................................................AGAGAGATGCAAAGGACTA....................1914.004.00----2.00-----2.00----------------------------------------
..................................................................................................................................................................................ATATGTAGTTGTTGCCTTCCAG..................................................2213.003.00---3.00-----------------------------------------------
......................................................................................................................................................................................................AGAGAAGTCATGGAGAGAG.................................1913.003.00-----2.00-------1.00-------------------------------------
...............................................................................................................................................................................................................ATGGAGAGAGATGCAAAGGA.......................2012.002.00--1.00-------------------------------------1.00----------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAAGGT.......................2112.005.00----------------1.00-----------------------------1.00----
.........................................................................................................................................................................................................GAAGTCATGGAGAGAGATG..............................1912.002.00---------2.00-----------------------------------------
......................................................................................................................................................................................................AGAGAAGTCATGGAGAGAGATGCAAAG.........................2712.002.00--2.00------------------------------------------------
..........................................................................................................................................................................................................AAGTCATGGAGAGAGATGCAAAGGA.......................2512.002.00------2.00--------------------------------------------
...............................................................................................................................................................................................................ATGGAGAGAGATGCAAAGG........................1911.001.00-------------------------------------1.00-------------
............................................................................................................................................................................................................GTCATGGAGAGAGATGCAAAGT........................2211.001.00--------------------------1.00------------------------
..................................................................................................................................................................................ATATGTAGTTGTTGCCTTCCAGA.................................................2311.001.00-------1.00-------------------------------------------
........................................................................................................................................................................................................AGAAGTCATGGAGAGAGATG..............................2011.001.00-------------1.00-------------------------------------
...............................................................................................................................................................................................................................AGGACTACGCCGACTCTATTCATG...2411.001.00--------1.00------------------------------------------
...........................................................................................................................................................................................................................GCAAAGGACTACGCCGAC.............1811.001.00--1.00------------------------------------------------
.............AGTTTTGTTTCACTTTACA..........................................................................................................................................................................................................................191.000.00--------------1.00------------------------------------
..................................................................................................................................................................................................................................ACTACGCCGACTCTATTCACGCA.231.000.00-----------1.00---------------------------------------
..........................................................................................................................................................................................................................TGCAAAGGACTACGCC................1611.001.00------------------1.00--------------------------------
............................................................................................................................................................................................................................CAAAGGACTACGCCGAC.............1711.001.00----------------------------------1.00----------------
............................................................................................................................................................................................................GTCATGGAGAGAGATGCAAAG.........................2111.001.00---------------------1.00-----------------------------
......................................................................................................................................................................................................AGAGAAGTCATGGAGAGA..................................1821.001.00-----0.500.50--------------------------------------------
..........................................................................................................................................GGTGGGGGTACAACTCTG..............................................................................................181.000.00------------------------------------------1.00--------
..................................................................................................................................................................................................................GAGAGAGATGCAAAGGACTACGCCGA..............2611.001.00-------------------------------------------1.00-------
...............................................................................................TAGTCCATCCTTTGTCATCAAAAT...................................................................................................................................241.000.00------------1.00--------------------------------------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAAGGACT.....................2311.001.00------------------------------1.00--------------------
...................................................................................................................................................................................TATGTAGTTGTTGCCTTCCAGCT................................................231.000.00---------------------------------------1.00-----------
.......................................................................................................................................................................................................................AGATGCAAAGGACTACGG.................181.000.00------1.00--------------------------------------------
....................................................................................................................................................................................................................GAGAGATGCAAAGGACTA....................1811.001.00--------------------------------1.00------------------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAAGGTT......................2211.005.00---------------1.00-----------------------------------
.............................................................................................................................................................................................................TCATGGAGAGAGATGCAAAGGACTACGCCCACT............331.000.00--------1.00------------------------------------------
..............................................................................................................................................................................................................................AAGGACTACGCCGACTCTATTCACGC..261.000.00-----------1.00---------------------------------------
......................................................................................................................................................................................................................GAGATGCAAAGGACTACGCCGACTCTATTCATG...3311.001.00------------------------------------1.00--------------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAA..........................1811.001.00---------------------------------------------1.00-----
............................................................................................................................................................................................................GTCATGGAGAGAGATGCAAAGG........................2211.001.00--------------------1.00------------------------------
........................................................................................................................................................................................................AGAAGTCATGGAGAGAGAT...............................1911.001.00-----1.00---------------------------------------------
...................................................................................................................................................................................TATGTAGTTGTTGCCTTCCAGT.................................................221.000.00---------------------------1.00-----------------------
......................................................................................................................................................................................................................GAGATGCAAAGGACTACGCCGACT............2411.001.00-------------------------------1.00-------------------
....................................................................................................................................................................................................................GAGAGATGCAAAGGACTAC...................1911.001.00----1.00----------------------------------------------
...........................................................................................................................................................................................................................GCAAAGGACTACGCCGACT............1911.001.00--1.00------------------------------------------------
...................................................................................................................................................ACAACTAAGATCTTCATGGGTAGAATTT...........................................................................2811.001.00-------------------1.00-------------------------------
.....................................................................................................................................................................................................................AGAGATGCAAAGGACTACGC.................2011.001.00----1.00----------------------------------------------
.........................................................................................................................................................................................................GAAGTCATGGAGAGAGATGC.............................2011.001.00-------1.00-------------------------------------------
...............TTTTGTTTCACTTTGTTTTAGG.....................................................................................................................................................................................................................221.000.00------------1.00--------------------------------------
..............................................................................................................................................................................................................CATGGAGAGAGATGCAAAGGA.......................2111.001.00--1.00------------------------------------------------
.....................................................................................................................................................................................................................AGAGATGCAAAGGACTACG..................1911.001.00-----------------------------1.00---------------------
.....................................................................................................................................................................GGTAGAATTTCTGATATGTA.................................................................2011.001.00-------------------------1.00-------------------------
............................................................................................................................................................................TTTCTGATATGTAGTTGTTGCCTT......................................................2411.001.00------------------------1.00--------------------------
.............................................................................................................................................................................TTCTGATATGTAGTTTGC...........................................................181.000.00--------------1.00------------------------------------
........................................................................................................................................................................................................AGAAGTCATGGAGAGAGATGCAA...........................2311.001.00----------------------1.00----------------------------
....................................................................................................................................................CAACTAAGATCTTCATGGGTAGAATTTAT.........................................................................291.000.001.00--------------------------------------------------
...........................................................................................................................................................................................................................GCAAAGGACTACGCCGACTCTATTCATG...2811.001.00--1.00------------------------------------------------
...................................................................................................................................................................TGGGTAGAATTTCTGATATG...................................................................2011.001.00---------------------------------1.00-----------------
......................................................................................................................................................................................................AGAGAAGTCATGGAGAG...................................1730.330.33------------------------------------------------0.33--

Antisense strand
ACTAGTGGTACCGAGTTTTGTTTCACTTTGTTTGTTTACCCATGGATGTGGTGTAATCGAGAAGACCATGTCTCAGGGCCCATCCAGCAGCCATTTAGTCCATCCTTTGTCATCATAAATCTGGTTAACTACTGGGTAGGTGGGGGTACAACTAAGATCTTCATGGGTAGAATTTCTGATATGTAGTTGTTGCCTTCCAGAGAAGTCATGGAGAGAGATGCAAAGGACTACGCCGACTCTATTCATGCAA
............................................................................................................................................((((((((((((((......(((.(((......))))))....))))))).)))).)))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................CCATGTCTCAGGGCCCCG....................................................................................................................................................................... 181.000.00--------------------------------------1.00------------
.................................................................CCATGTCTCAGGGCCGCGA...................................................................................................................................................................... 191.000.00----------------------------1.00----------------------
........................................................................................................................................................................................................CTCTCTCCATGACTTCT................................. 1720.500.50-----------------------------------------------0.50---
...................................................................................GACTAAATGGCTGCTGG...................................................................................................................................................... 1730.330.33-------------------------------------------------0.33-
........................................................................................................................................................................................................TCTCTCCATGACTTCT.................................. 1640.250.25--------------------------------------------------0.25