ID: uc002xye.2_intron_8_0_chr20_55913432_f.5p
GENE: (9)
chr20:55913382-55913631+


(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(1)
BRAIN
(16)
CELL-LINE
(1)
CERVIX
(2)
HELA
(2)
OTHER
(1)
RRP40.ip
(1)
SKIN

Sense strand
GGATACATTTCATGTTCCTGTTTTCACTCTTGTAGATGCTGATCCACATGGTAATTTATCACTGGACTATTTACAACAATAGTCATAACTAAATCATATTTGTTGTTGTGTTTTCTTCCTCTTTTTTTTTTTTTCTTTTTGAGATTGAGTCCTGCTCTGTCACCCAGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGC
..............................................................................................................................................(((.(((.....))).))).....((((((((.(((.((.......))))).))))..))))..............................................
..................................................................................................................115........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR343335SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGTT..........................................................................................................258.000.008.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTCAAG..................................................................................................................205.000.00---3.001.001.00-------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCAAAG...............................................................................................................224.000.00-2.00-1.001.00--------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTCTG...................................................................................................................244.000.00-1.00-1.00-2.00-------------------
..................................................................................................................CTTCCTCTTTTTTTTTAG......................................................................................................................184.000.00-2.00-2.00---------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGAGC..........................................................................................................254.000.001.00-3.00----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGTC..........................................................................................................253.000.002.00-1.00----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTAG.....................................................................................................................193.000.00---1.001.001.00-------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTAG..............................................................................................................233.000.00---2.00--1.00------------------
...................................................................................................................................................AGTCCTGCTCTGTCACCCATCC.................................................................................223.000.00--3.00----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTTGCAG..........................................................................................................263.000.001.00-----2.00------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTTCTG.................................................................................................................263.000.00-1.00--2.00--------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTCAG...................................................................................................................213.000.00-1.00--1.001.00-------------------
..................................................................................................................................................................................CGCGATCTTGGCTCACTGCATATA................................................242.000.00----------2.00--------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTGC...........................................................................................................272.000.00--2.00----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTCTTG............................................................................................................252.000.00-1.00----1.00------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTACTG...........................................................................................................272.000.001.001.00-----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGCTG.........................................................................................................262.000.002.00------------------------
..................................................................................................................................................................................CGCGATCTTGGCTCACTGCATTAA................................................242.000.00------------2.00------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGTG..........................................................................................................252.000.001.00-1.00----------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTTCTG.................................................................................................................272.000.00----1.001.00-------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTGGTG...........................................................................................................272.000.002.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTCCAG..................................................................................................................202.000.00---1.00-1.00-------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTAG................................................................................................................212.000.00-1.00-1.00---------------------
..........................................................................................................................TTTTTTTTTTTTCTTTTTGAGAGGAG......................................................................................................262.000.00--2.00----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTACAG...........................................................................................................272.000.00-2.00-----------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTAAAG.............................................................................................................262.000.00-1.00----1.00------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTCT...............................................................................................................242.000.00--1.001.00---------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTAAAG............................................................................................................262.000.00-1.00-1.00---------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTTTCTG................................................................................................................281.000.00-----1.00-------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTGTA............................................................................................................241.000.00--1.00----------------------
.........................................................................................................................................................................................TTGGCTCACTGCAACCTCCACCTAGGT......................................271.000.001.00------------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCTCTG...............................................................................................................261.000.00--1.00----------------------
..................................................................................................................CTTCCTCTTTTTTTTTCCCG....................................................................................................................201.000.00---1.00---------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTAAGC..........................................................................................................251.000.001.00------------------------
...........................................................................................................................TTTTTTTTTTTCTTTTTGAGAGGAG......................................................................................................251.000.00--1.00----------------------
..................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAAAA................................................241.000.00--------------1.00----------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTAATG..............................................................................................................241.000.00----1.00--------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTCTGG............................................................................................................271.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTACTG.............................................................................................................241.000.00---1.00---------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTCGG.................................................................................................................231.000.00-1.00-----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTCTGG.............................................................................................................251.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTCTG..........................................................................................................281.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCGG.................................................................................................................211.000.00-1.00-----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGCAC.........................................................................................................261.000.001.00------------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCAAAT...............................................................................................................261.000.00------1.00------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTTCCATT...............................................................................................................291.000.00---1.00---------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTCAAA............................................................................................................241.000.00---1.00---------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTCAG...................................................................................................................231.000.00---1.00---------------------
........................................................................................................................CTTTTTTTTTTTTTCTTTTTGAGTTGG.......................................................................................................271.000.001.00------------------------
............................................................................................................................TTTTTTTTTTCTTTTTGAGATTTATC....................................................................................................261.000.001.00------------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTAAAG............................................................................................................241.000.00---1.00---------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTAG................................................................................................................221.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTCTTG...........................................................................................................261.000.00-1.00-----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTCGG............................................................................................................261.000.001.00------------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGTAGC.........................................................................................................261.000.00--1.00----------------------
.........................................................ATCACTGGACTATTTATG...............................................................................................................................................................................181.000.00--------------------1.00----
......................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCTCCTCTC....................................321.000.001.00------------------------
........................................................................................................................CTTTTTTTTTTTTTCTTTTTAAGG..........................................................................................................241.000.00---1.00---------------------
..........................................................................................................................................................................................TGGCTCACTGCAACCTCCACCTCCTGGGACC.................................311.000.00--1.00----------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTTATG.................................................................................................................261.000.00-1.00-----------------------
...............................................................................................................................................................................TGGCGCGATCTTGGCTCACTGCTTTT.................................................261.000.00------------------------1.00
.................................................................................................................TCTTCCTCTTTTTTTTTTTCGGC..................................................................................................................231.000.001.00------------------------
..................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAAAAT...............................................251.000.00--------1.00----------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTATTT.................................................................................................................251.000.00-1.00-----------------------
..............................................................................................................................................................................ATGGCGCGATCTTGGCTCGGTG......................................................221.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTAAAG...........................................................................................................261.000.00-1.00-----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTTCAA...........................................................................................................251.000.00-1.00-----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTTGG..........................................................................................................281.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTCAAG............................................................................................................261.000.00-1.00-----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTCG..............................................................................................................221.000.00-1.00-----------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCTTTTA..............................................................................................................271.000.00-1.00-----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGAC..........................................................................................................251.000.00--1.00----------------------
................................................................................................................TTCTTCCTCTTTTTTTTTCTGT....................................................................................................................221.000.001.00------------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGACGG.........................................................................................................261.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCAC.................................................................................................................211.000.001.00------------------------
..................................................................................................................CTTCCTCTTTTTTTTTAAAG....................................................................................................................201.000.00-----1.00-------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTGG..................................................................................................................231.000.00--1.00----------------------
............................................................................................................................TTTTTTTTTTCTTTTTGAGATTGGG.....................................................................................................251.000.00--1.00----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGCTC.........................................................................................................261.000.001.00------------------------
.......................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCACCTCCTCTC....................................311.000.001.00------------------------
.....................................................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA............251.000.00-----------1.00-------------
........................................................................................................................CTTTTTTTTTTTTTCTTTTTGAGAAAG.......................................................................................................271.000.001.00------------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTATG............................................................................................................231.000.001.00------------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTCTG......................................................................................................................211.000.00-----1.00-------------------
..................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAA..................................................221.000.00---------1.00---------------
....................................................................................................................TCCTCTTTTTTTTTTTCACG..................................................................................................................201.000.00---1.00---------------------
........................................................................................................................CTTTTTTTTTTTTTCTTTTTGAGCT.........................................................................................................251.000.001.00------------------------
..................................................................................................................CTTCCTCTTTTTTTTTTAATG...................................................................................................................211.000.00----1.00--------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTTCTTTTCTG............................................................................................................301.000.00---1.00---------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTCAAG...........................................................................................................261.000.00-1.00-----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTAAG..............................................................................................................241.000.00---1.00---------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCTCTAG..............................................................................................................271.000.00-1.00-----------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTTATTG................................................................................................................281.000.00------1.00------------------
......................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCGCGG.......................................291.000.001.00------------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTAATC...........................................................................................................241.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTGGC..........................................................................................................281.000.001.00------------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTGCCC................................................................................................................231.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCGGCC...............................................................................................................231.000.001.00------------------------
........................................................................................................................CTTTTTTTTTTTTTCTTTTTGAGTTG........................................................................................................261.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTGGTC................................................................................................................221.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTAAAG.............................................................................................................241.000.00---1.00---------------------
........................................................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA............221.000.00----------------1.00--------
...................................................................................................................TTCCTCTTTTTTTTTTTTTGCTT................................................................................................................231.000.001.00------------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTTTG.............................................................................................................2611.001.00---1.00---------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTAGC...............................................................................................................211.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTCTCG...........................................................................................................261.000.00---1.00---------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTAGAG............................................................................................................261.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTCAG............................................................................................................251.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTTAAAG..........................................................................................................271.000.00-1.00-----------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTGCA..................................................................................................................251.000.001.00------------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTAAAT..........................................................................................................251.000.00-1.00-----------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTGG...................................................................................................................241.000.00--1.00----------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCTAAAT..............................................................................................................271.000.00-1.00-----------------------
...................................................................................................................TTCCTCTTTTTTTTTTTCCCG..................................................................................................................211.000.00--1.00----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTAT..............................................................................................................221.000.00----1.00--------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTCTGG..................................................................................................................251.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTCTT...............................................................................................................231.000.00------1.00------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTAAAG..........................................................................................................281.000.00---1.00---------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTCC...............................................................................................................231.000.001.00------------------------
............................................................................................................TGTTTTCTTCCTCTTTTTTTTTTTGC....................................................................................................................261.000.001.00------------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTCCAG.................................................................................................................271.000.00----1.00--------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTCTG...................................................................................................................251.000.00-----1.00-------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTAATG..........................................................................................................251.000.00-1.00-----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTAGGC..........................................................................................................251.000.00--1.00----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTAATC..........................................................................................................251.000.001.00------------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTGCAG...........................................................................................................251.000.001.00------------------------
...........................................................................................................................TTTTTTTTTTTCTTTTTGATCAG........................................................................................................231.000.00--1.00----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTATTT................................................................................................................241.000.00----1.00--------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTAG...........................................................................................................271.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTAATC............................................................................................................251.000.00--1.00----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTAAAG...................................................................................................................211.000.00---1.00---------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTTTGGTC..........................................................................................................2911.001.00--1.00----------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTACG..................................................................................................................241.000.00-----1.00-------------------
...........................................................................................................................TTTTTTTTTTTCTTTTTGAGTTGT.......................................................................................................241.000.00--1.00----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGAGTC.........................................................................................................261.000.00--1.00----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTAAT...............................................................................................................221.000.00---1.00---------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTACC....................................................................................................................231.000.001.00------------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTAAAT...........................................................................................................251.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTCAA...................................................................................................................191.000.00----1.00--------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGAAC..........................................................................................................251.000.001.00------------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTAAA.............................................................................................................231.000.00----1.00--------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCGC.................................................................................................................211.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTCTG.............................................................................................................251.000.001.00------------------------
..............................................................................................................................................................................ATGGCGCGATCTTGGCTAATG.......................................................211.000.00--1.00----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTATTT...........................................................................................................251.000.00-1.00-----------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGGTG.........................................................................................................261.000.00--1.00----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTAAG...............................................................................................................221.000.00---1.00---------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTTAAGG................................................................................................................261.000.00-----1.00-------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTTTGT..................................................................................................................261.000.001.00------------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTAG...............................................................................................................241.000.00---1.00---------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGAGAGGC.......................................................................................................281.000.001.00------------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTACAG...................................................................................................................221.000.00------1.00------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTCAAT.............................................................................................................251.000.00---1.00---------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTTG...........................................................................................................271.000.00-1.00-----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTCTA............................................................................................................241.000.001.00------------------------
..........................................................................................................................TTTTTTTTTTTTCTTTTTGAGAACGG......................................................................................................261.000.00--1.00----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTATTG............................................................................................................261.000.00------1.00------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTGTAG..............................................................................................................231.000.00----1.00--------------------
......................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCTCCGGTG....................................321.000.00--1.00----------------------
..............................................................................................................................................................................ATGGCGCGATCTTGGCTCACTGCAACCTAC..............................................301.000.00--1.00----------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTAG...................................................................................................................221.000.00---1.00---------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTAAAG................................................................................................................241.000.00----1.00--------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCACTG...............................................................................................................221.000.00-----1.00-------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTTCTTTTTTAAG..........................................................................................................311.000.00-----1.00-------------------
.................................................................................................................TCTTCCTCTTTTTTTTTTTTAAG..................................................................................................................231.000.00-1.00-----------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTCTG...................................................................................................................231.000.00-1.00-----------------------
......................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCTCCGGC.....................................311.000.00--1.00----------------------
...........................................................................................................................................................TCTGTCACCCAGGAGTGCAATGGCCC.....................................................................261.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTTCAAG..........................................................................................................271.000.00-1.00-----------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTAAG..................................................................................................................241.000.00----1.00--------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTCCTG.............................................................................................................251.000.00---------------------1.00---
......................................................................................................................CTCTTTTTTTTTTTTTCTTTTCAAG...........................................................................................................251.000.00-1.00-----------------------
......................................................................................................................CTCTTTTTTTTTTTTTCTATTC..............................................................................................................221.000.00-1.00-----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTACG...............................................................................................................221.000.00-1.00-----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCACAG...............................................................................................................221.000.00-----1.00-------------------
.................................................................................................................................................TGAGTCCTGCTCTGTCACCCAGGCCGG..............................................................................271.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTAAAG.............................................................................................................251.000.00----1.00--------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGTTCA.........................................................................................................261.000.001.00------------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTTTCTG.................................................................................................................251.000.00-1.00-----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTCAATG...............................................................................................................251.000.00-1.00-----------------------
..............................................................................................................TTTTCTTCCTCTTTTTTTTTTTC.....................................................................................................................231.000.001.00------------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTGTTA.............................................................................................................241.000.00-----1.00-------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTAATG................................................................................................................241.000.00----1.00--------------------
.......................................................................................................................TCTTTTTTTTTTTTTCTTTTTGGTTT.........................................................................................................261.000.001.00------------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTTTTG..........................................................................................................281.000.00-1.00-----------------------
............................................................................................................................TTTTTTTTTTCTTTTTGAGAGGAG......................................................................................................241.000.00--1.00----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTAATT...........................................................................................................271.000.001.00------------------------
.............................................................................................................................................................................AATGGCGCGATCTTGGCTCT.........................................................201.000.00---------1.00---------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTTCCTG................................................................................................................271.000.00-1.00-----------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTTCTTG..........................................................................................................271.000.00----1.00--------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTCAG..............................................................................................................231.000.00---1.00---------------------
.......................................................................................................................................................................................................CCTCCACCTCCTGGGTTCAAGTGG...........................241.000.00-----------1.00-------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTTACTG...........................................................................................................2880.880.120.250.250.38----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTCTTTTTAG............................................................................................................2830.670.33-0.67-----------------------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTTTTTG.............................................................................................................2530.670.67---0.67---------------------
.....................................................................................................................CCTCTTTTTTTTTTTTTCTTTTTG.............................................................................................................2450.600.60-0.40-0.20---------------------
........................................................................................................................................TTTTGAGATTGAGTCCTGCTCT............................................................................................2220.500.500.50------------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTTCTTTCTG.............................................................................................................3020.500.50---0.50---------------------
...............................................................................................................TTTCTTCCTCTTTTTTTTTTTTTCTTT................................................................................................................2720.500.50--0.50----------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTCTTTTT..............................................................................................................2630.330.33----0.33--------------------
..................................................................................................................CTTCCTCTTTTTTTTTTTTTCTTTTTTG............................................................................................................2830.330.33----0.33--------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTT...............................................................................................................2480.120.120.12------------------------
...................................................................................................................TTCCTCTTTTTTTTTTTTTCTTTTAAAG...........................................................................................................2880.120.12------0.12------------------

Antisense strand
GGATACATTTCATGTTCCTGTTTTCACTCTTGTAGATGCTGATCCACATGGTAATTTATCACTGGACTATTTACAACAATAGTCATAACTAAATCATATTTGTTGTTGTGTTTTCTTCCTCTTTTTTTTTTTTTCTTTTTGAGATTGAGTCCTGCTCTGTCACCCAGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGC
..............................................................................................................................................(((.(((.....))).))).....((((((((.(((.((.......))))).))))..))))..............................................
..................................................................................................................115........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR343335SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................................TGCAACCTCCACCTCCTGGGTTTTGT.............................. 261.000.00-------1.00-----------------
......................................................................................................................................................................................................ACCTCCACCTCCTGGGTTCAAGTGATTCTCGG.................... 321.000.00--1.00----------------------
................................................................................................................TTCTTCCTCTTTTTTTTTTTCGG................................................................................................................... 231.000.00------------------1.00------
....................................................................................................................TCCTCTTTTTTTTTTTTTCTC................................................................................................................. 211.000.00-------------------1.00-----
...............................................................................................................................................................................................CACTGCAACCTCCACCTCCTGGGTTAA................................ 271.000.00-------1.00-----------------
..........................................................................................................................................................................TGCAATGGCGCGATCTTGGCTCAGAA...................................................... 261.000.00-----------------1.00-------
........................................................................................................................................................................................CTTGGCTCACTGCAACCTCCACTAG......................................... 251.000.001.00------------------------
...............................................................................................................................................................................................CACTGCAACCTCCACCTCCTGGTTT.................................. 251.000.00--------1.00----------------
.....................................................................................................................................................................................................AACCTCCACCTCCTGGCTT.................................. 191.000.00----------------------1.00--
................................................................................................................................................................................................ACTGCAACCTCCACCTCCTTTT.................................... 221.000.00---------------1.00---------
................................................................................................................................................................................................ACTGCAACCTCCACCTCCTGGGTTCT................................ 261.000.00-----------------------1.00-
................................................................................................................................................TTGAGTCCTGCTCTGTAAAT...................................................................................... 201.000.00-------------1.00-----------
................................................................................................................................................................................................ACTGCAACCTCCACCTCCTGGGTTTTAT.............................. 281.000.00-------1.00-----------------
................................................................................................................................................GGGTGACAGAGCAGGACTCAA..................................................................................... 2120.500.50-------------0.50-----------