ID: uc002xxe.1_intron_8_0_chr20_54965722_r.5p
GENE: AURKA(1)
chr20:54967010-54967259-


(1)
AGO2.ip
(9)
B-CELL
(2)
BRAIN
(9)
BREAST
(39)
CELL-LINE
(5)
CERVIX
(2)
HEART
(5)
HELA
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(16)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
CTGAGCTCTTGGAAGACTTGGGTCCTTGGGTCGCAGGTGGGAGCCGACGGGTGGGTAGACCGTGGGGGATATCTCAGTGGCGGACGAGGACGGCGGGGACAAGGGGCGGCTGGTCGGAGTGGCGGAGCGTCAAGTCCCCTGTCGGTTCCTCCGTCCCTGAGTGTCCTTGGCGCTGCCTTGTGCCCGCCCAGCGCCTTTGCATCCGCTCCTGGGCACCGAGGCGCCCTGTAGGATACTGCTTGTTACTTAT
...........................................................((.((.(((....)))..((.((........)).))....)).)).((.(((......))).))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040025(GSM532910)
G613T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR029131(GSM416760)
MCF7. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................................GGGGATATCTCAGTGGTAGA......................................................................................................................................................................2026.000.50---------1.00---1.001.00-------------1.00---------1.00-----------------------1.00---------------------------------
..GAGCTCTTGGAAGACTTGGGT...................................................................................................................................................................................................................................2115.005.00-----4.00-----------------------------------------------------------------------------1.00------------
..GAGCTCTTGGAAGACTTGGGTCCTTGGGTCGCAGGT....................................................................................................................................................................................................................3615.005.00------2.00----2.00-------------------------------------------------------------------------1.00----------
.............................................GACGGGTGGGTAGACCG............................................................................................................................................................................................1715.005.00--5.00---------------------------------------------------------------------------------------------
................................................................GGGGATATCTCAGTGGTAG.......................................................................................................................................................................1925.000.50--------------1.00---------------------1.00-----------------1.00-----------------1.00----1.00------------------
..............................................................................................................................................................................................................................GCCCTGTAGGATACTGC...........1714.004.00--3.00---------------1.00-----------------------------------------------------------------------------
................................................................GGGGATATCTCAGTGGTA........................................................................................................................................................................1824.000.50------------------1.00---------------1.00-----1.00----------------------------------1.00--------------------
.TGAGCTCTTGGAAGACTTGGGTCCTTGGGTCGCAGG.....................................................................................................................................................................................................................3614.004.00------2.00----2.00------------------------------------------------------------------------------------
....................................................................................................AAGGGGCGGCTGGTCGGAGTG.................................................................................................................................2113.003.00----------------1.00---------1.00--------------------------------------1.00------------------------------
..................................................................................................................................................................................................................GGGCACCGAGGCGCCCTGTAGGATACTGCTT.........3113.003.003.00-----------------------------------------------------------------------------------------------
................................................................GGGGATATCTCAGTGGT.........................................................................................................................................................................1723.000.50---------1.00-----------------------------------------------1.00-----------------------1.00--------------
................................................................GGGGATATCTCAGTGGAGAG......................................................................................................................................................................2022.000.50---------2.00--------------------------------------------------------------------------------------
...............................................................................GCGGACGAGGACGGCGGGGACAAGGGGCGGCTGGTCGGAGTGGCGGAGCGTCAAGTCCCCTGTCGGTTCCTCCGTCC..............................................................................................7712.002.00------------------------------2.00-----------------------------------------------------------------
.........TGGAAGACTTGGGTCCTTGGG............................................................................................................................................................................................................................2112.002.001.00------------------------------------------------1.00----------------------------------------------
....GCTCTTGGAAGACTTGGGTCCTTGGGT...........................................................................................................................................................................................................................2712.002.00------------2.00-----------------------------------------------------------------------------------
.............AGACTTGGGTCCTTGGG............................................................................................................................................................................................................................1712.002.00---2.00--------------------------------------------------------------------------------------------
....................................................................................................AAGGGGCGGCTGGTCGGAGTGGCGGAGCG.........................................................................................................................2912.002.00----1.00----------------------------------1.00--------------------------------------------------------
..GAGCTCTTGGAAGACTTGGGTC..................................................................................................................................................................................................................................2212.002.00----------2.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGGCACCGAGGCGCCCTGTAGGATACTGC...........2912.002.00-2.00----------------------------------------------------------------------------------------------
....GCTCTTGGAAGACTTGGGTC..................................................................................................................................................................................................................................2012.002.00--------------------------------------------------------1.00-1.00-------------------------------------
.....................GTCCTTGGGTCGCAGG.....................................................................................................................................................................................................................1612.002.00---------------1.00---1.00----------------------------------------------------------------------------
............................................................................................................................................................................CTGCCTTGTGCCCGCCCAGCGC........................................................2212.002.00-----------------------------2.00------------------------------------------------------------------
.............AGACTTGGGTCCTTGGGT...........................................................................................................................................................................................................................1812.002.00--------------------------------2.00---------------------------------------------------------------
...............ACTTGGGTCCTTGGGTCGC........................................................................................................................................................................................................................1912.002.00---------------1.00--------------------------------1.00-----------------------------------------------
.....CTCTTGGAAGACTTGGGT...................................................................................................................................................................................................................................1812.002.00---------------------------------------------1.00------------------------------------------1.00-------
..............................................ACGGGTGGGTAGACCGTG..........................................................................................................................................................................................1812.002.00-------------------------------2.00----------------------------------------------------------------
...............ACTTGGGTCCTTGGGTC..........................................................................................................................................................................................................................1731.331.33---------------------------------1.33--------------------------------------------------------------
.........TGGAAGACTTGGGTCTCTT..............................................................................................................................................................................................................................191.000.00-----------------1.00------------------------------------------------------------------------------
................CTTGGGTCCTTGGGTCGC........................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------
.............................................................GTGGGGGATATCTCAGTGGCGGA......................................................................................................................................................................2311.001.00--------------------------------------------------------------------1.00---------------------------
..........GGAAGACTTGGGTCCTTGGGT...........................................................................................................................................................................................................................2111.001.00-------------------------------------------------------1.00----------------------------------------
...............................................................................................................................................GGTTCCTCCGTCCCTGCGG........................................................................................191.000.00-------------1.00----------------------------------------------------------------------------------
.............................................................................................................CTGGTCGGAGTGGCGGAG...........................................................................................................................1811.001.00--------------------------1.00---------------------------------------------------------------------
.....CTCTTGGAAGACTTGGGTCCT................................................................................................................................................................................................................................2111.001.00-----------------------1.00------------------------------------------------------------------------
.......CTTGGAAGACTTGGGTCCTTGGG............................................................................................................................................................................................................................2311.001.00------------1.00-----------------------------------------------------------------------------------
..........................TGGGTCGCAGGTGGGAGCCGACGGGCCGG...................................................................................................................................................................................................291.000.00---1.00--------------------------------------------------------------------------------------------
................................................................................................................................................GTTCCTCCGTCCCTGCGG........................................................................................181.000.00-------------1.00----------------------------------------------------------------------------------
..................................................................................................................CGGAGTGGCGGAGCGGAT......................................................................................................................181.000.00---------------------------------------------------------------1.00--------------------------------
...........................................CCGACGGGTGGGTAGAC..............................................................................................................................................................................................1711.001.00----1.00-------------------------------------------------------------------------------------------
...............ACTTGGGTCCTTGGGTCGCGG......................................................................................................................................................................................................................2111.002.00-----------------------------------------1.00------------------------------------------------------
................CTTGGGTCCTTGGGTCGCAGG.....................................................................................................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GCGCCCTGTAGGATACTGCT..........2011.001.00-1.00----------------------------------------------------------------------------------------------
............................................CGACGGGTGGGTAGA...............................................................................................................................................................................................1511.001.00---------------------1.00--------------------------------------------------------------------------
..............GACTTGGGTCCTTGGGTCGCAG......................................................................................................................................................................................................................2211.001.00----1.00-------------------------------------------------------------------------------------------
..........................................GCCGACGGGTGGGTAGAC..............................................................................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------------------------------
................................................................................CGGACGAGGACGGCGGGGACCCG...................................................................................................................................................231.000.00-------------------------------------------------------------------------1.00----------------------
............................................................................................................................................................................................................................GCGCCCTGTAGGATACT.............1711.001.00---------------------------1.00--------------------------------------------------------------------
.............................................GACGGGTGGGTAGACCGTGGGGG......................................................................................................................................................................................2311.001.00------------------------------------------------------------------1.00-----------------------------
...AGCTCTTGGAAGACTTGGGT...................................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------1.00----------------
.................................................................................................................TCGGAGTGGCGGAGCGC........................................................................................................................171.000.00---------------------1.00--------------------------------------------------------------------------
.............AGACTTGGGTCCTTGGGTCGCAGGC....................................................................................................................................................................................................................251.000.00---1.00--------------------------------------------------------------------------------------------
.................................................................................................................TCGGAGTGGCGGAGCTGGG......................................................................................................................191.000.00----------------------------------------------1.00-------------------------------------------------
.............................................................................TGGCGGACGAGGACGGCGGGGA.......................................................................................................................................................2211.001.00------------------------------------------------------------------------------------1.00-----------
...AGCTCTTGGAAGACTTGGGTCCT................................................................................................................................................................................................................................2311.001.00------------------------------------------------------------1.00-----------------------------------
..........................TGGGTCGCAGGTGGGAGCCGACGGGTGGGCAG................................................................................................................................................................................................321.000.00-------1.00----------------------------------------------------------------------------------------
.........................................................................................ACGGCGGGGACAAGGGGCGGCTGGG........................................................................................................................................251.000.00---------------------------------------------------------------------------------------1.00--------
..............GACTTGGGTCCTTGGGTCG.........................................................................................................................................................................................................................1911.001.00----1.00-------------------------------------------------------------------------------------------
......................................................................................AGGACGGCGGGGACAAGGGGCGG.............................................................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------
..........GGAAGACTTGGGTCCTGGG.............................................................................................................................................................................................................................191.000.00-------1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................CTTGGCGCTGCCTTGTGCCCG................................................................2111.001.00---------------------------------------------------------------------1.00--------------------------
...................................................................................................CAAGGGGCGGCTGGTCGGAGTG.................................................................................................................................2211.001.00-----------------------------------------------------------1.00------------------------------------
.............................................................................................................CTGGTCGGAGTGGCGGAGCGT........................................................................................................................2111.001.00-1.00----------------------------------------------------------------------------------------------
............AAGACTTGGGTCCTTGGGTCGCAGGCATC.................................................................................................................................................................................................................291.000.00---1.00--------------------------------------------------------------------------------------------
...................................................................GATATCTCAGTGGCGGACGAG..................................................................................................................................................................2111.001.00--------------------------------------------1.00---------------------------------------------------
..................TGGGTCCTTGGGTCGCTCG.....................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------------------------------------------------------
............................................................................GTGGCGGACGAGGACGGC............................................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------------------------------
...........................................................................................................GGCTGGTCGGAGTGGAGT.............................................................................................................................181.000.00-----------------------------------------------------1.00------------------------------------------
............................................................................................GCGGGGACAAGGGGCGGC............................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------------------------------
.........................TTGGGTCGCAGGTGGGAG...............................................................................................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------------------------------
..............................................................................................................TGGTCGGAGTGGCGGAG...........................................................................................................................1711.001.00--------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................TCCGTCCCTGAGTGTCCTTGG................................................................................2111.001.00---------------1.00--------------------------------------------------------------------------------
....................................................................ATATCTCAGTGGCGGACGA...................................................................................................................................................................1911.001.00------------------------1.00-----------------------------------------------------------------------
..........................TGGGTCGCAGGTGGGAGC..............................................................................................................................................................................................................1811.001.00----------1.00-------------------------------------------------------------------------------------
..GAGCTCTTGGAAGACTTGGG....................................................................................................................................................................................................................................2011.001.00----------------------1.00-------------------------------------------------------------------------
...............ACTTGGGTCCTTGGGTCGCAGGTGGGAGCCG............................................................................................................................................................................................................3111.001.00-1.00----------------------------------------------------------------------------------------------
...AGCTCTTGGAAGACTTGGGTCCTTGGG............................................................................................................................................................................................................................2711.001.00-------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................CGCTGCCTTGTGCCCGCCCAGCGCCTCTGC..................................................301.000.00-------1.00----------------------------------------------------------------------------------------
...............................................................................GCGGACGAGGACGGCGGGGACAAGGGGCGGCTGGTCGGAGTGGCGGAGCGTCAAGTCCCCTGTCGGTTCCTCCGCCT..............................................................................................771.000.00--------------------------------------------------1.00---------------------------------------------
.......................................GGAGCCGACGGGTGGGTAGA...............................................................................................................................................................................................2011.001.00----------------------1.00-------------------------------------------------------------------------
....................................................................................................AAGGGGCGGCTGGTCGGAGTGA................................................................................................................................2211.003.00-----------------------1.00------------------------------------------------------------------------
........TTGGAAGACTTGGGTCCTTGGGTCGCA.......................................................................................................................................................................................................................2711.001.00----------1.00-------------------------------------------------------------------------------------
.............................................GACGGGTGGGTAGACCGTGGGGGATA...................................................................................................................................................................................2611.001.001.00-----------------------------------------------------------------------------------------------
...........GAAGACTTGGGTCCTTGGGTC..........................................................................................................................................................................................................................2111.001.00----------------------------------------------------1.00-------------------------------------------
..................................................GTGGGTAGACCGTGGGGGA.....................................................................................................................................................................................1911.001.00-------------------------1.00----------------------------------------------------------------------
..................TGGGTCCTTGGGTCGCAGGGT...................................................................................................................................................................................................................211.000.00--------------1.00---------------------------------------------------------------------------------
.......CTTGGAAGACTTGGGTCCTTGGGTCGCAG......................................................................................................................................................................................................................2911.001.00--------------------------------------------------------------------------------------1.00---------
................................................................GGGGATATCTCAGTGGAGA.......................................................................................................................................................................1921.000.50---------------------------1.00--------------------------------------------------------------------
.............................GTCGCAGGTGGGAGCCGACG.........................................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------------------
......................TCCTTGGGTCGCAGGTG...................................................................................................................................................................................................................1711.001.00--------1.00---------------------------------------------------------------------------------------
................................................................GGGGATATCTCAGTG...........................................................................................................................................................................1530.670.67---------------------------------------------------------------------------------------------0.330.33-
..GAGCTCTTGGAAGACTTGG.....................................................................................................................................................................................................................................1920.500.50-------------------------------------------------------------------------------------------0.50----
........TTGGAAGACTTGGGTCCT................................................................................................................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------0.50---
................................................................GGGGATATCTCAGTGG..........................................................................................................................................................................1620.500.50-----------------------------------------------------------------------------------------0.50------
.TGAGCTCTTGGAAGAC.........................................................................................................................................................................................................................................1680.120.12-----------------------------------------------------------------------------------------------0.12

Antisense strand
CTGAGCTCTTGGAAGACTTGGGTCCTTGGGTCGCAGGTGGGAGCCGACGGGTGGGTAGACCGTGGGGGATATCTCAGTGGCGGACGAGGACGGCGGGGACAAGGGGCGGCTGGTCGGAGTGGCGGAGCGTCAAGTCCCCTGTCGGTTCCTCCGTCCCTGAGTGTCCTTGGCGCTGCCTTGTGCCCGCCCAGCGCCTTTGCATCCGCTCCTGGGCACCGAGGCGCCCTGTAGGATACTGCTTGTTACTTAT
...........................................................((.((.(((....)))..((.((........)).))....)).)).((.(((......))).))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040025(GSM532910)
G613T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR029131(GSM416760)
MCF7. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................CGGAGGAACCGACAGGGGA................................................................................................. 1914.004.004.00-----------------------------------------------------------------------------------------------
....GCTCTTGGAAGACTTAGG.................................................................................................................................................................................................................................... 182.000.00--------------------2.00---------------------------------------------------------------------------
..................................................................................................................................................TCCTCCGTCCCTGAGGGGA..................................................................................... 191.000.00-------------------------------------------------------------1.00----------------------------------
..............................................................................................................................................................................................................................GCCCTGTAGGATACTGCTTATG...... 221.000.00---------------------------------------------------1.00--------------------------------------------
...............................................................................................................................................................................................AGGAGCGGATGCAAAGGCG........................................ 1911.001.00------------------------------------------------------------------------------1.00-----------------
......................................................GTAGACCGTGGGGGATCCT................................................................................................................................................................................. 191.000.00----------------------------1.00-------------------------------------------------------------------
..............................................................................................................................................................................................................................GCCCTGTAGGATACTGCTTATA...... 221.000.00-----------------1.00------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TCCTACAGGGCGCCTCGG................. 1811.001.001.00-----------------------------------------------------------------------------------------------
..............................................................................................................TGGTCGGAGTGGCGGTC........................................................................................................................... 171.000.00----------------------------------------------------------------------------------1.00-------------
.....................................................................................................................................AGGAACCGACAGGGGAC.................................................................................................... 1711.001.00-----------------------------------------------1.00------------------------------------------------
................................................................................................................................................................................................CCAGGAGCGGATGCAAAGGC...................................... 2011.001.00----------------------------------------------------------------------1.00-------------------------
....................................................................................................................................GAGGAACCGACAGGGGACT................................................................................................... 1911.001.00-----------------------------------------------------------------------1.00------------------------
.............................................................................................................................................CAGGGACGGAGGAACCGA........................................................................................... 1811.001.00----------------------------------------------------------------1.00-------------------------------
........................................................................................................................................GACGGAGGAACCGACAGGG............................................................................................... 1911.001.00--------------------------------------------------------------------------------1.00---------------
...................................................................................................................................AGGGACGGAGGAACCGACAGGGGACTT............................................................................................ 2711.001.00-------------------------------------------1.00----------------------------------------------------
..........................................................................................................................................CAGGGACGGAGGAACCGACAG........................................................................................... 2111.001.00------------------------1.00-----------------------------------------------------------------------
...............................................................................................................................................TCAGGGACGGAGGAACC.......................................................................................... 1720.500.50----------------0.50-------------------------------------------------------------------------------