ID: uc002xwf.1_intron_4_0_chr20_50226705_r.3p
GENE: ATP9A(8)
chr20:50226655-50226904-


(4)
BREAST 		(4)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATAATGAGGATGATGAGAATCGTACCTACTTCATAGGGTTGTTGTTGATGTTGTGAGAATGAAATGAGCAAATCCATGTAAAGTACCTTACAGCAGTGCCGGCGCGGGTGTTATGTAAGTATCAGGTGTTATTTTTATTCTGTAAATGTAAGGGATTTTGTCATGACTTTTGGTGACATCCTCCTCTCTCCTTGGCACAGGCTGTCTTTTCCTCCGTGTTTTACTTTGCCTCCGTCCCTCTCTATCAAGG
....................................................................((((..((((((((((.(((((((((((....(((((.((((((.....))))))..))))).........))))...))))))).)))))).))))...))))..............................................................................
...........................................................60...............................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
................................................................TGAGCAAATCCATGTAAAACTG....................................................................................................................................................................2281.000.0080.00---1.00------------
................................................................TGAGCAAATCCATGTAAAACT.....................................................................................................................................................................218.000.007.00------1.00---------
...................................................................GCAAATCCATGTAAAACTG....................................................................................................................................................................196.000.006.00----------------
................................................................TGAGCAAATCCATGTAAAAC......................................................................................................................................................................206.000.006.00----------------
................................................................TGAGCAAATCCATGTAAAACTC....................................................................................................................................................................226.000.006.00----------------
................................................................TGAGCAAATCCATGTAAAAGTG....................................................................................................................................................................225.000.005.00----------------
...................................................................GCAAATCCATGTAAAACT.....................................................................................................................................................................183.000.003.00----------------
.......................................................................................................................................................GGGATTTTGTCATGAGAT.................................................................................183.000.00-3.00---------------
................................................................TGAGCAAATCCATGTAAAGCTGA...................................................................................................................................................................232.000.001.00-1.00--------------
................................................................TGAGCAAATCCATGTAATAG......................................................................................................................................................................202.000.002.00----------------
................................................................TGAGCAAATCCATGTAAAACTA....................................................................................................................................................................222.000.002.00----------------
.................................................................GAGCAAATCCATGTAAAACTG....................................................................................................................................................................212.000.001.00-----1.00----------
................................................................TGAGCAAATCCATGTAAAGTTGA...................................................................................................................................................................231.000.001.00----------------
................................................................TGAGCAAATCCATGTAACAC......................................................................................................................................................................201.000.001.00----------------
................................................................TGAGCAAATCCATGTAAAAATG....................................................................................................................................................................221.000.00--1.00--------------
................................................................TGAGCAAATCCATGTAAAACGG....................................................................................................................................................................221.000.001.00----------------
................................................................TGAGCAAATCCATGTAAAACTT....................................................................................................................................................................221.000.001.00----------------
................................................................TGAGCAAATCCATGTAAAAG......................................................................................................................................................................201.000.001.00----------------
................................................................TGAGCAAATCCATGTAAAATT.....................................................................................................................................................................211.000.00-1.00---------------
................................................................TGAGCAAATCCATGTAATACT.....................................................................................................................................................................211.000.00--1.00--------------
................................................................TGAGCAAATCCATGTACAG.......................................................................................................................................................................191.000.00--1.00--------------
..................................AGGGTTGTTGTTGATGTTGTG...................................................................................................................................................................................................2111.001.00---------1.00-------
................................................................TGAGCAAATCCATGTGAG........................................................................................................................................................................181.000.001.00----------------
................................................................TGAGCAAATCCATGTAACAG......................................................................................................................................................................201.000.001.00----------------
................................................................TGAGCAAATCCATGTTAA........................................................................................................................................................................181.000.001.00----------------
................................................................TGAGCAAATCCATGTAAAACAG....................................................................................................................................................................221.000.00-1.00---------------
................................................................TGAGCAAATCCATGTAAAA.......................................................................................................................................................................191.000.001.00----------------
............................................TTGATGTTGTGAGAATGAAATGAGCA....................................................................................................................................................................................2611.001.00-----------1.00-----
................................................................TGAGCAAATCCATGTAAAACCG....................................................................................................................................................................221.000.001.00----------------
..................................................................................................................................................................................TCCTCCTCTCTCCTTGGC......................................................1820.500.50---------------0.50-
...........................................................................................................................................................TTTTGTCATGACTTTTGG.............................................................................1830.330.33----------------0.33
..............................................................................................................................................................................................................TTTTCCTCCGTGTTTT............................1660.170.17--0.17--------------

Antisense strand
ATAATGAGGATGATGAGAATCGTACCTACTTCATAGGGTTGTTGTTGATGTTGTGAGAATGAAATGAGCAAATCCATGTAAAGTACCTTACAGCAGTGCCGGCGCGGGTGTTATGTAAGTATCAGGTGTTATTTTTATTCTGTAAATGTAAGGGATTTTGTCATGACTTTTGGTGACATCCTCCTCTCTCCTTGGCACAGGCTGTCTTTTCCTCCGTGTTTTACTTTGCCTCCGTCCCTCTCTATCAAGG
....................................................................((((..((((((((((.(((((((((((....(((((.((((((.....))))))..))))).........))))...))))))).)))))).))))...))))..............................................................................
...........................................................60...............................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.............................................................................................................................................................................CAAGGAGAGAGGAGGATGTCA........................................................ 2112.002.00---2.00-------------
.............................................................................................................................................................................GCCTGTGCCAAGGAGAGAGGAGGATGTCA................................................ 2911.001.00--------1.00--------
.................................................................................................................................................................................................................................TTGCCTCCGTCCCTCTTTA...... 191.000.00--------------1.00--
.........................................................................................................................................................................................................CTGTCTTTTCCTCCGGAT............................... 181.000.00------------1.00----
..............................................................................................................................................................................................................TTTTCCTCCGTGTTTTACC......................... 191.000.00-----1.00-----------
...............................................ATGTTGTGAGAATGAATACC....................................................................................................................................................................................... 201.000.00-------------1.00---
.....................................................................................................................................................................................TCCTCTCTCCTTGGCACATGTG............................................... 221.000.00----------1.00------