ID: uc002xva.2_intron_1_0_chr20_48700792_r.3p
GENE: (2)
chr20:48700742-48700991-


(1)
AGO2.ip
(7)
B-CELL
(5)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(9)
LIVER
(1)
OTHER
(7)
SKIN
(1)
TESTES
(3)
UTERUS

Sense strand
TATTCCCCCAAGGCCCGGAAGTCATATAAACTAGTGTAGGAACTAGTATAGAACTGCTGACCTACCACAGAACAAGTAGACTCCATGCTGGAAGCAGATGTACCAGTTCTACAGTCAGGGATAAATGGGGTTTCACAAGCTCTACCTTTTTGAATGCTTTGTTTGTAATTGCGTGACATCTCCGTACTCTTTTTTTCCAGACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAA
..................................................................................................................(((((((....(((((((.....)))))))..))))))).................................................................................................
...................................................................................................100.....................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR343336SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR189785SRR189784SRR343335SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR343337SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
........................................................................................................AGTTCTACAGTCAGGATC................................................................................................................................189.000.006.00------1.00-----1.001.00------------------------------------------------
........................................................................................................AGTTCTACAGTCAGGCGAT...............................................................................................................................199.000.00-------2.00---1.00-1.00-----1.00-1.001.00----1.00-------1.00---------------------------
....................................................................................................................................TCACAAGCTCTACCTCCAG...................................................................................................198.000.00-2.00--2.003.00--1.00------------------------------------------------------
....................................................................................................................................TCACAAGCTCTACCTCC.....................................................................................................176.000.00-3.00----1.00-2.00------------------------------------------------------
.....................................................................................................ACCAGTTCTACAGTCCTTA..................................................................................................................................193.000.00--3.00------------------------------------------------------------
.........................................................................................................GTTCTACAGTCAGGGGATC..............................................................................................................................193.000.00---1.00-----------------1.00---------------------1.00-------------------
........................................................................................................AGTTCTACAGTCAGGACGA...............................................................................................................................193.000.00----------------------------1.00-1.00------------------1.00-------------
....................................................................AGAACAAGTAGACTCCATGCTGGAAGCAG.........................................................................................................................................................2912.002.00------------------2.00--------------------------------------------
.......................................................................ACAAGTAGACTCCATGCTGGAAGC...........................................................................................................................................................2412.002.00--------------------2.00------------------------------------------
........................................................................................................AGTTCTACAGTCAGGAC.................................................................................................................................172.000.00------------2.00--------------------------------------------------
....................................................................................................................................TCACAAGCTCTACCTCCAA...................................................................................................192.000.00------2.00--------------------------------------------------------
.....................................................................GAACAAGTAGACTCCATG...................................................................................................................................................................1812.002.00----------2.00----------------------------------------------------
.......................................................................................................CAGTTCTACAGTCAGGGGATC..............................................................................................................................212.000.00---2.00-----------------------------------------------------------
.......................................................................................................CAGTTCTACAGTCAGGATC................................................................................................................................192.000.002.00--------------------------------------------------------------
........................................................................................................AGTTCTACAGTCAGGACGC...............................................................................................................................191.000.00------------------------------------1.00--------------------------
.......................................................................................................CAGTTCTACAGTCAGAATA................................................................................................................................191.000.00---------------1.00-----------------------------------------------
........................................................................................................AGTTCTACAGTCAGGGATCA..............................................................................................................................201.000.00----------------------1.00----------------------------------------
.........................................................................................................GTTCTACAGTCAGGGCGA...............................................................................................................................181.000.00---------------------------------------1.00-----------------------
........................................................................................................AGTTCTACAGTCAGGAGAT...............................................................................................................................191.000.00----------------1.00----------------------------------------------
......................................................................................................................................................................................CGTACTCTTTTTTTCATGA.................................................191.000.00----1.00----------------------------------------------------------
.......................................................................................................CAGTTCTACAGTCAGACGA................................................................................................................................191.000.00---------------1.00-----------------------------------------------
.................................................................CACAGAACAAGTAGACTCCATGCT.................................................................................................................................................................2411.001.00-----------------------1.00---------------------------------------
.................................................AGAACTGCTGACCTACCAACAG...................................................................................................................................................................................221.000.00---1.00-----------------------------------------------------------
.......................................................................................................CAGTTCTACAGTCAGCAG.................................................................................................................................181.000.00----------------1.00----------------------------------------------
.....................................................................GAACAAGTAGACTCCATGCTGGAAG............................................................................................................................................................2511.001.00--------------------------------1.00------------------------------
.........................................................................................................GTTCTACAGTCAGGGGATT..............................................................................................................................191.000.00--------------------------------------------------1.00------------
........................................................................................................AGTTCTACAGTCAGGGGATG..............................................................................................................................201.000.00-----------------1.00---------------------------------------------
........................................................................................................AGTTCTACAGTCAGGGGATT..............................................................................................................................201.000.00-----------1.00---------------------------------------------------
.........................................ACTAGTATAGAACTGCTGACCTACC........................................................................................................................................................................................2511.001.00----------------------------------------1.00----------------------
........................................................................................................AGTTCTACAGTCAGGACG................................................................................................................................181.000.001.00--------------------------------------------------------------
..................................................................ACAGAACAAGTAGACTCCATG...................................................................................................................................................................2111.001.00-------------------------1.00-------------------------------------
..............................................................TACCACAGAACAAGTAGACTC.......................................................................................................................................................................2111.001.00------------------------------------------------1.00--------------
.....................................................................................................ACCAGTTCTACAGTCCG....................................................................................................................................171.000.00--1.00------------------------------------------------------------
...............................................................ACCACAGAACAAGTAGACTCC......................................................................................................................................................................2111.001.00--------------------------------------------1.00------------------
.........................................................................AAGTAGACTCCATGCTGGAAGCA..........................................................................................................................................................2311.001.00----------------------------------------------1.00----------------
........................................................................................................AGTTCTACAGTCAGGACGT...............................................................................................................................191.000.00-----------------------------------------1.00---------------------
................................................................CCACAGAACAAGTAGACTCC......................................................................................................................................................................2011.001.00---------------------------------1.00-----------------------------
..............................................................................................................ACAGTCAGGGATAAATGGGGTTTCACAAGCTC............................................................................................................3211.001.00-----------------------------1.00---------------------------------
.....................................................................................................ACCAGTTCTACAGTCCGAC..................................................................................................................................191.000.00--------------1.00------------------------------------------------
........................................................................................................AGTTCTACAGTCAGGGGATC..............................................................................................................................201.000.00-----------------1.00---------------------------------------------
.......................................................................................................CAGTTCTACAGTCAGGACG................................................................................................................................191.000.001.00--------------------------------------------------------------
...................................................................CAGAACAAGTAGACTCCATGCT.................................................................................................................................................................2211.001.00---------1.00-----------------------------------------------------
...............................TAGTGTAGGAACTAGTTATG.......................................................................................................................................................................................................201.000.00-------------------------------------1.00-------------------------
........................................................................................................AGTTCTACAGTCAGGGA.................................................................................................................................1711.001.00--1.00------------------------------------------------------------
....................................TAGGAACTAGTATAGAACTGC.................................................................................................................................................................................................2111.001.00------------------------1.00--------------------------------------
.................................................................................................................GTCAGGGATAAATGGGCTTC.....................................................................................................................201.000.00------------------------------------------1.00--------------------
....................................................................AGAACAAGTAGACTCCAT....................................................................................................................................................................1811.001.00--------------------------1.00------------------------------------
.........................................................................................................GTTCTACAGTCAGGGATC...............................................................................................................................181.000.001.00--------------------------------------------------------------
........................................................................................................AGTTCTACAGTCAGGATA................................................................................................................................181.000.00-------------------1.00-------------------------------------------
.........................................................................................................GTTCTACAGTCAGGGAATG..............................................................................................................................191.000.00----1.00----------------------------------------------------------
.........................................................................................................GTTCTACAGTCAGGGCGAC..............................................................................................................................191.000.001.00--------------------------------------------------------------
.....................................................................GAACAAGTAGACTCCATGCTGGAAGC...........................................................................................................................................................2611.001.00-------------------------------1.00-------------------------------
.................................................................CACAGAACAAGTAGACTCCATGCTGGCAG............................................................................................................................................................291.000.00----------------------------------1.00----------------------------
........................................................................................................AGTTCTACAGTCAGGCGA................................................................................................................................181.000.001.00--------------------------------------------------------------
........................................................................................................................................................................................................................GAATATACAGCCTTAAAATAGAATGTGGACCT..3220.500.50---------0.50-----------------------------------------------------
..................................................................ACAGAACAAGTAGACTCC......................................................................................................................................................................1820.500.50-----------------------------------------------------0.50---------
....................................................................AGAACAAGTAGACTCC......................................................................................................................................................................1620.500.50------------------------0.50--------------------------------------
...................................................................CAGAACAAGTAGACTCC......................................................................................................................................................................1720.500.50------------------------------------------------------0.50--------
........................................................................................................................................................................................................................GAATATACAGCCTTAAAATAGAATGTGGACC...3120.500.50---------0.50-----------------------------------------------------
....................................................................................................................................................................................................................................TTAAAATAGAATGTGGACC...1970.430.43-----------------------0.14-0.14----------------------------------0.14--
..................................................................................................................................................................................................................AAAACCGAATATACAGCCTTAAAATAG.............2730.330.33-------------------------------------------------------0.33-------
........................TATAAACTAGTGTAGG..................................................................................................................................................................................................................1630.330.33-----------------------0.33---------------------------------------
......................................................................................................................................................................................................................................AAAATAGAATGTGGACCTA.1970.290.29--------------------------0.29------------------------------------
..................................................................................................................................................................................................................AAAACCGAATATACAGCCT.....................1940.250.25---------------------------0.25-----------------------------------
..................................................................................................................................................................................................................AAAACCGAATATACAGCC......................1840.250.25-------------------------0.25-------------------------------------
...............................................................................................................................................................................................................ATGAAAACCGAATATACA.........................1840.250.25--------------------------------------------------------0.25------
................................................................................................................................................................................................................................AGCCTTAAAATAGAATGTGGA.....2160.170.17----------------------------------------------------------0.17----
.............................................................................................................................................................................................................................TACAGCCTTAAAATAGAATGTGGACCT..2760.170.17-----------------------------------------------------------0.17---
.............................................................................................................................................................................................................................TACAGCCTTAAAATAGAATGTGGACC...2660.170.17---------0.17-----------------------------------------------------
..........................................................................................................................................................................................................................ATATACAGCCTTAAAATAGAATGTGGACCTAA3260.170.17-----------------------0.17---------------------------------------
.......................................................................................................................................................................................................................................AAATAGAATGTGGACCTA.1870.140.14-------------------------------------------------------------0.14-
...........................AAACTAGTGTAGGAAC...............................................................................................................................................................................................................1680.120.12--------------------------------------------------------------0.12

Antisense strand
TATTCCCCCAAGGCCCGGAAGTCATATAAACTAGTGTAGGAACTAGTATAGAACTGCTGACCTACCACAGAACAAGTAGACTCCATGCTGGAAGCAGATGTACCAGTTCTACAGTCAGGGATAAATGGGGTTTCACAAGCTCTACCTTTTTGAATGCTTTGTTTGTAATTGCGTGACATCTCCGTACTCTTTTTTTCCAGACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAA
..................................................................................................................(((((((....(((((((.....)))))))..))))))).................................................................................................
...................................................................................................100.....................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR343336SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR189785SRR189784SRR343335SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR343337SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.......................................................................................................CAGTTCTACAGTCAGGTAG................................................................................................................................ 191.000.00-----------------------------------------------1.00---------------
......................................................TGCTGACCTACCACAGTC.................................................................................................................................................................................. 181.000.00--------------------------------------1.00------------------------
....................................................................................................................................................................................................................................TTAAAATAGAATGTGGAC.... 181.000.00---------------------------------------------------1.00-----------
.....................................................................................................................................................................................................................................TAAAATAGAATGTGGTTTT.. 191.000.00----------------------------------------------------1.00----------
..........................................................................................................................................................................................TTCGGTTTTCATAAATTGTCTGGAAAAAAAGAG............................... 3311.001.00---------------------------------------------1.00-----------------
.....................................................................................................................................................................................................................ATTTTAAGGCTGTATATTCGGT............... 2240.250.25---------------------------------------------------------0.25-----