ID: uc002xrx.1_intron_10_0_chr20_45023143_r.3p
GENE: ELMO2(2)
chr20:45023093-45023342-


(1)
AGO1.ip 		(1)
BRAIN 		(4)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(8)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCAAGAGACAAAATCCTAAGCAGAAGTTGTGGTATGATCTAGAAAAATTCAAACCAGGTAGTTTCATGTGTTACTTTATGCAGTGTCTGTCTTCAAACTCTTCAAAACATGTAACAAGAGTGAAAAATGAAGAAATACTCTTTTTCCACCTTTCTGATTCTTTCTCCCCAGGCAGCCGTGTCTGTGTTTTTGTCTCGCAGAATTAGAGCCCATTGGGAACGATGCCACCACCGTCAGACATTGTCAAAGT
.......................................................((((..((((((.((((((.((.((.((.((.((....)).)).)).)).))...))))))...))))))...((((((......)))))).))))...................................................................................................
..................................................51......................................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................AGGTAGTTTCATGTGTTG.................................................................................................................................................................................1819.000.0017.00--2.00-------------------------
......................................................CAGGTAGTTTCATGTGTTGGG...............................................................................................................................................................................2112.000.00-5.007.00--------------------------
.......................................................AGGTAGTTTCATGTGTTGGG...............................................................................................................................................................................207.000.001.003.003.00--------------------------
......................................................CAGGTAGTTTCATGTTGTT.................................................................................................................................................................................196.000.00---1.00-2.00------1.00--1.00--1.00----------
......................................................CAGGTAGTTTCATGTTGT..................................................................................................................................................................................184.000.00---1.002.00-----------1.00------------
......................................................CAGGTAGTTTCATGTTG...................................................................................................................................................................................174.000.002.00--1.00--1.00----------------------
......................................................CAGGTAGTTTCATGTGTTTGGG..............................................................................................................................................................................223.000.00-2.00---------1.00-----------------
......................................................CAGGTAGTTTCATGTGTTG.................................................................................................................................................................................193.000.002.00--1.00-------------------------
......................................................CAGGTAGTTTCATGTCGGG.................................................................................................................................................................................193.000.00-3.00---------------------------
...................................................................................................................................................................................................................ATTGGGAACGATGCCC.......................162.000.00--------1.00--------------1.00-----
......................................................CAGGTAGTTTCATGTGTTGGGA..............................................................................................................................................................................222.000.00--2.00--------------------------
......................................................CAGGTAGTTTCATGTGTTGG................................................................................................................................................................................202.000.00--1.00------------------1.00-------
......................................................CAGGTAGTTTCATGTTAT..................................................................................................................................................................................181.000.00-1.00---------------------------
...............................................................................................................................................................................................GTCTCGCAGAATTAGAGCCCATTGGG.................................2611.001.00--------------------------1.00--
........................................................GGTAGTTTCATGTGTTTGGT..............................................................................................................................................................................201.000.00-------------1.00---------------
...................................................................................................................................................................................................................ATTGGGAACGATGCCCTCA....................191.000.00---------------------------1.00-
.......................................................AGGTAGTTTCATGTGTGGG................................................................................................................................................................................191.000.00-1.00---------------------------
.......................................................AGGTAGTTTCATGTGTTTGGG..............................................................................................................................................................................211.000.00-1.00---------------------------
........................................................................................................................................................TCTGATTCTTTCTCCCCAGA..............................................................................201.000.00--------------------1.00--------
.......................................................................................................................................................................................GTGTTTTTGTCTCGCAGA.................................................1811.001.00---------1.00-------------------
.................................................................................................................................................................................................CTCGCAGAATTAGAGCC........................................1711.001.00------------------------1.00----
....................................................................................................................................................................................................................TTGGGAACGATGCCAATAT...................191.000.00---1.00-------------------------
......................................................CAGGTAGTTTCATGTAGG..................................................................................................................................................................................181.000.001.00----------------------------
........................................................GGTAGTTTCATGTGTTG.................................................................................................................................................................................171.000.001.00----------------------------
......................................................CAGGTAGTTTCATGTGTCGGG...............................................................................................................................................................................211.000.00-1.00---------------------------
....................................................................................................................................................CCTTTCTGATTCTTTCTCCCCAGA..............................................................................241.000.00--------------1.00--------------
......................................................CAGGTAGTTTCATGTTTG..................................................................................................................................................................................181.000.00------1.00----------------------
......................................................CAGGTAGTTTCATGTTGGG.................................................................................................................................................................................191.000.00--1.00--------------------------
...............................................................................................................................................................CTTTCTCCCCAGGCAGCCGT.......................................................................2011.001.00-------------------1.00---------
.......................................................AGGTAGTTTCATGTGTTTGGC..............................................................................................................................................................................211.000.00-1.00---------------------------
.......................................................AGGTAGTTTCATGTGTTGGGC..............................................................................................................................................................................211.000.00-1.00---------------------------

Antisense strand
TCAAGAGACAAAATCCTAAGCAGAAGTTGTGGTATGATCTAGAAAAATTCAAACCAGGTAGTTTCATGTGTTACTTTATGCAGTGTCTGTCTTCAAACTCTTCAAAACATGTAACAAGAGTGAAAAATGAAGAAATACTCTTTTTCCACCTTTCTGATTCTTTCTCCCCAGGCAGCCGTGTCTGTGTTTTTGTCTCGCAGAATTAGAGCCCATTGGGAACGATGCCACCACCGTCAGACATTGTCAAAGT
.......................................................((((..((((((.((((((.((.((.((.((.((....)).)).)).)).))...))))))...))))))...((((((......)))))).))))...................................................................................................
..................................................51......................................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................TACTCTTTTTCCACCTAAT................................................................................................ 191.000.00-------------------------1.00---
...........................................................................TTATGCAGTGTCTGTGAGC............................................................................................................................................................ 191.000.00-------1.00---------------------
......................................................................................CTGTCTTCAAACTCTTGCT................................................................................................................................................. 191.000.00----------1.00------------------
...........................................................................TTATGCAGTGTCTGTCGAGC........................................................................................................................................................... 201.000.00-------1.00---------------------
..............................................................................................................GTAACAAGAGTGAAATCGT......................................................................................................................... 191.000.00----------------------------1.00
..............................................................................................................................................................................................................................TGACAATGTCTGACGGTGGTGGCA.... 2411.001.00----------------------1.00------
.........................................................................................................................................CAGAAAGGTGGAAAAAGAG.............................................................................................. 1911.001.00-----------------1.00-----------