ID: uc002xrt.1_intron_19_0_chr20_45023172_r.3p
GENE: ELMO2(2)
chr20:45023122-45023371-


(1)
AGO1.ip 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TTGTCCCATTTCTTCTTGCTGATTTAATCTCAAGAGACAAAATCCTAAGCAGAAGTTGTGGTATGATCTAGAAAAATTCAAACCAGGTAGTTTCATGTGTTACTTTATGCAGTGTCTGTCTTCAAACTCTTCAAAACATGTAACAAGAGTGAAAAATGAAGAAATACTCTTTTTCCACCTTTCTGATTCTTTCTCCCCAGGCAGCCGTGTCTGTGTTTTTGTCTCGCAGAATTAGAGCCCATTGGGAACG
....................................................................................((((..((((((.((((((.((.((.((.((.((....)).)).)).)).))...))))))...))))))...((((((......)))))).))))......................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................AGGTAGTTTCATGTGTTG....................................................................................................................................................1819.000.0017.00--2.00----------------------
...................................................................................CAGGTAGTTTCATGTGTTGGG..................................................................................................................................................2112.000.00-5.007.00-----------------------
....................................................................................AGGTAGTTTCATGTGTTGGG..................................................................................................................................................207.000.001.003.003.00-----------------------
...................................................................................CAGGTAGTTTCATGTTGTT....................................................................................................................................................196.000.00---1.00-2.00-----1.00--1.00--1.00--------
...................................................................................CAGGTAGTTTCATGTTGT.....................................................................................................................................................184.000.00---1.002.00----------1.00----------
...................................................................................CAGGTAGTTTCATGTTG......................................................................................................................................................174.000.002.00--1.00--1.00-------------------
...................................................................................CAGGTAGTTTCATGTGTTTGGG.................................................................................................................................................223.000.00-2.00--------1.00---------------
...................................................................................CAGGTAGTTTCATGTGTTG....................................................................................................................................................193.000.002.00--1.00----------------------
...................................................................................CAGGTAGTTTCATGTCGGG....................................................................................................................................................193.000.00-3.00------------------------
...................................................................................CAGGTAGTTTCATGTGTTGGGA.................................................................................................................................................222.000.00--2.00-----------------------
...................................................................................CAGGTAGTTTCATGTGTTGG...................................................................................................................................................202.000.00--1.00------------------1.00----
...................................................................................CAGGTAGTTTCATGTTAT.....................................................................................................................................................181.000.00-1.00------------------------
............................................................................................................................................................................................................................GTCTCGCAGAATTAGAGCCCATTGGG....2611.001.00------------------------1.00-
.....................................................................................GGTAGTTTCATGTGTTTGGT.................................................................................................................................................201.000.00------------1.00-------------
....................................................................................AGGTAGTTTCATGTGTGGG...................................................................................................................................................191.000.00-1.00------------------------
....................................................................................AGGTAGTTTCATGTGTTTGGG.................................................................................................................................................211.000.00-1.00------------------------
.....................................................................................................................................................................................TCTGATTCTTTCTCCCCAGA.................................................201.000.00-------------------1.00------
....................................................................................................................................................................................................................GTGTTTTTGTCTCGCAGA....................1811.001.00--------1.00-----------------
..............................................................................................................................................................................................................................CTCGCAGAATTAGAGCC...........1711.001.00----------------------1.00---
...................................................................................CAGGTAGTTTCATGTAGG.....................................................................................................................................................181.000.001.00-------------------------
.....................................................................................GGTAGTTTCATGTGTTG....................................................................................................................................................171.000.001.00-------------------------
...................................................................................CAGGTAGTTTCATGTGTCGGG..................................................................................................................................................211.000.00-1.00------------------------
.................................................................................................................................................................................CCTTTCTGATTCTTTCTCCCCAGA.................................................241.000.00-------------1.00------------
...................................................................................CAGGTAGTTTCATGTTTG.....................................................................................................................................................181.000.00------1.00-------------------
...................................................................................CAGGTAGTTTCATGTTGGG....................................................................................................................................................191.000.00--1.00-----------------------
............................................................................................................................................................................................CTTTCTCCCCAGGCAGCCGT..........................................2011.001.00------------------1.00-------
....................................................................................AGGTAGTTTCATGTGTTTGGC.................................................................................................................................................211.000.00-1.00------------------------
....................................................................................AGGTAGTTTCATGTGTTGGGC.................................................................................................................................................211.000.00-1.00------------------------

Antisense strand
TTGTCCCATTTCTTCTTGCTGATTTAATCTCAAGAGACAAAATCCTAAGCAGAAGTTGTGGTATGATCTAGAAAAATTCAAACCAGGTAGTTTCATGTGTTACTTTATGCAGTGTCTGTCTTCAAACTCTTCAAAACATGTAACAAGAGTGAAAAATGAAGAAATACTCTTTTTCCACCTTTCTGATTCTTTCTCCCCAGGCAGCCGTGTCTGTGTTTTTGTCTCGCAGAATTAGAGCCCATTGGGAACG
....................................................................................((((..((((((.((((((.((.((.((.((.((....)).)).)).)).))...))))))...))))))...((((((......)))))).))))......................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................................................TACTCTTTTTCCACCTAAT................................................................... 191.000.00-----------------------1.00--
........................................................................................................TTATGCAGTGTCTGTGAGC............................................................................................................................... 191.000.00-------1.00------------------
.TGTCCCATTTCTTCTCCTT...................................................................................................................................................................................................................................... 191.000.00--------------------1.00-----
...................................................................................................................CTGTCTTCAAACTCTTGCT.................................................................................................................... 191.000.00---------1.00----------------
........................................................................................................TTATGCAGTGTCTGTCGAGC.............................................................................................................................. 201.000.00-------1.00------------------
...........................................................................................................................................GTAACAAGAGTGAAATCGT............................................................................................ 191.000.00-------------------------1.00
......................................................................................................................................................................CAGAAAGGTGGAAAAAGAG................................................................. 1911.001.00----------------1.00---------