ID: uc002xrr.2_intron_8_0_chr20_44987598_r.5p
GENE: (1)
chr20:44992810-44993059-


(2)
AGO1.ip 		(4)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(55)
CELL-LINE 		(12)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(7)
HELA 		(6)
LIVER 		(3)
OTHER 		(24)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCCTCGCACTTCCGGTGGGGAGATTCCGGCCTGGAGCTCCCAGGGCCGAGGTGAGTGGGTGTGCGGCCGGCCTCCCGGCGCACTCCCAGAGGCTGGGGGGCCGGGGCTGGAGAAGGGAAGCGGGCTCCCCACCCGGGATCTGCGCGGGTTGACATGGGGCACGCCACGCCCCTGCCCCTCCCCGGGCCTCAGTTTCGCCGTCTGTGGAGGGGGCAGGGGTCTCCAAGCGCCCTCCTGCAAGGCACCTGCC
...................................................................((((((((((((...(((...)))))))))))))))..(((..........))).................................................................................................................................
...................................................................68.......................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR189782SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
........................................................................TCCCGGCGCACTCCCAGAGT..............................................................................................................................................................20149.0022.00--10.004.00-3.001.001.00-1.00---2.00-1.00--1.00-3.00-3.00---1.002.001.00--2.00-----1.001.00-----2.00-------------1.00----------1.00--1.00-----1.00-------------1.001.00--1.00--------1.00-----1.00----------------------------
........................................................................TCCCGGCGCACTCCCAGAGG..............................................................................................................................................................20127.0027.00---2.003.00--4.003.00-1.001.00--1.00---1.00-----1.00---1.00-----1.00----------1.00--1.00------1.00-1.00---------1.00-----------------------------------------1.00--------------1.00--------1.00------
........................................................................TCCCGGCGCACTCCCAGAG...............................................................................................................................................................19122.0022.00---2.006.00----1.00--------------------------2.001.00---1.00------------1.00-1.00--------1.00-----1.00--1.00----------1.00--------------------------1.001.00---------------1.00----------
........................................................................TCCCGGCGCACTCCCAGAGA..............................................................................................................................................................20118.0022.00-----2.00---1.00-1.00-----------1.001.001.00---2.00-----1.00------2.00---------1.00--------1.00--1.00------------------------------------1.00------1.00---------1.00---------------------
....................AGATTCCGGCCTGGAGCTCCC.................................................................................................................................................................................................................2118.008.00-8.00------------------------------------------------------------------------------------------------------------------------------------------
............................................GCCGAGGTGAGTGGGTGTG...........................................................................................................................................................................................1917.007.00------------1.00----1.00---1.00------------------------1.00------------1.00-------------------------------------1.00----------------------1.00-------------------
........................................................................TCCCGGCGCACTCCCAGAGAAA............................................................................................................................................................2217.0022.00-----1.00--------1.00-----------------1.00-1.00--------1.00-----------------------------------1.00-1.00----------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGAGGC.............................................................................................................................................................2116.006.00---3.001.00--------------------------------------------------------------------------------------1.00-------1.00----------------------------------------
...................GAGATTCCGGCCTGGAGCT....................................................................................................................................................................................................................1915.005.005.00-------------------------------------------------------------------------------------------------------------------------------------------
..........................CGGCCTGGAGCTCCCAGGG.............................................................................................................................................................................................................1914.004.004.00-------------------------------------------------------------------------------------------------------------------------------------------
.................GGGAGATTCCGGCCTGGAGC.....................................................................................................................................................................................................................2014.004.00-4.00------------------------------------------------------------------------------------------------------------------------------------------
................GGGGAGATTCCGGCCTGGAG......................................................................................................................................................................................................................2014.004.00------3.00-------------------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................TCCCGGCGCACTCCCAGAGGCT............................................................................................................................................................2213.003.00-----1.00-1.00----------------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................TCCCGGCGCACTCCCAGAGGT.............................................................................................................................................................2113.0027.00--1.00-----------2.00-----------------------------------------------------------------------------------------------------------------------------
.............................................CCGAGGTGAGTGGGTGTG...........................................................................................................................................................................................1813.003.00-----------------------------------1.00-----------------------------------------------------1.00------------------------1.00-------------------------
........................................................................TCCCGGCGCACTCCCAGAGTT.............................................................................................................................................................2113.0022.00--2.00--1.00--------------------------------------------------------------------------------------------------------------------------------------
.................GGGAGATTCCGGCCTGGAG......................................................................................................................................................................................................................1913.003.003.00-------------------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGAT...............................................................................................................................................................192.000.00----------------------------------------------------------------------------------1.00---------------------------------1.00-----------------------
...............TGGGGAGATTCCGGCCTGG........................................................................................................................................................................................................................1912.002.00-2.00------------------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAG.................................................................................................................................................................1712.002.00----------------2.00---------------------------------------------------------------------------------------------------------------------------
...........................................GGCCGAGGTGAGTGGGTG.............................................................................................................................................................................................1812.002.00------------1.00--------1.00----------------------------------------------------------------------------------------------------------------------
.........................................AGGGCCGAGGTGAGTGGG...............................................................................................................................................................................................1812.002.00------2.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................CTCCCGGCGCACTCCCAGAGT..............................................................................................................................................................2112.001.00--------------------------------------1.00----1.00------------------------------------------------------------------------------------------------
....CGCACTTCCGGTGGGGAG....................................................................................................................................................................................................................................1812.002.002.00-------------------------------------------------------------------------------------------------------------------------------------------
............................................................GTGCGGCCGGCCTCCCGGC...........................................................................................................................................................................1912.002.002.00-------------------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGAGAA.............................................................................................................................................................2112.0022.00------------------------------1.00-----------------------------------------------------1.00-------------------------------------------------------
............................................GCCGAGGTGAGTGGGTG.............................................................................................................................................................................................1712.002.00----------1.001.00--------------------------------------------------------------------------------------------------------------------------------
....................AGATTCCGGCCTGGAGCTCCCAGGGC............................................................................................................................................................................................................2612.002.00------1.00------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................................................CTGGGGGGCCGGGGCTGGAGA.........................................................................................................................................2112.002.00-------------2.00------------------------------------------------------------------------------------------------------------------------------
..............................CTGGAGCTCCCAGGGCCGAG........................................................................................................................................................................................................2012.002.00---------------1.00----------------------------------1.00-----------------------------------------------------------------------------------------
..............................................CGAGGTGAGTGGGTGTG...........................................................................................................................................................................................1712.002.00------------------------------------------------------------1.00---------------------------1.00---------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGATT..............................................................................................................................................................201.000.00----------------------------------------1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................GCCGTCTGTGGAGGGGGCAGGGGTCACC..........................281.000.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................CGGGGCTGGAGAAGGGTTCC.................................................................................................................................201.000.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------
...................................GCTCCCAGGGCCGAGGTGA....................................................................................................................................................................................................1911.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................GGGCCGGGGCTGGAGAAGGGAAGCGGGCTCCCC........................................................................................................................3311.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------
................................GGAGCTCCCAGGGCCGAG........................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------1.00--------------------------------------------------------
.........................CCGGCCTGGAGCTCCCAGGGCC...........................................................................................................................................................................................................2211.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCCG.................................................................................................................................................................171.000.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
..............................CTGGAGCTCCCAGGGCCGAGGTGAGTG.................................................................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00--------
.................................................GGTGAGTGGGTGTGCGGCCGGCT..................................................................................................................................................................................231.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CCGTCTGTGGAGGGGGCA...................................1811.001.00-------------------------------------------------------------------------------------------------------1.00------------------------------------
...................................................................................................GCCGGGGCTGGAGAAGGG.....................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------
.........................................AGGGCCGAGGTGAGTGTG...............................................................................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------------------1.00------------------------
................................GGAGCTCCCAGGGCC...........................................................................................................................................................................................................1501.001.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................CGGGATCTGCGCGGGTTGACATGGGGCAC........................................................................................2911.001.00------------------------------------------------------------------1.00-------------------------------------------------------------------------
...........................................................................CGGCGCACTCCCAGAGGC.............................................................................................................................................................1811.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------
...........................................GGCCGAGGTGAGTGGGTGTGCG.........................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------------------------1.00-------------------------------------
.......................................................................CTCCCGGCGCACTCCCAG.................................................................................................................................................................1811.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................CCTCCCGGCGCACTCCCAGAG...............................................................................................................................................................2111.001.00----------------------------------------------------------------------------------------------1.00---------------------------------------------
........................................................................TCCCGGCGCACTCCCAGCG...............................................................................................................................................................1911.002.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
..........................................GGGCCGAGGTGAGTGGGTG.............................................................................................................................................................................................1911.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
........................TCCGGCCTGGAGCTCCCAGGGC............................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------------------------------------------1.00------------------
............CGGTGGGGAGATTCCGGCCTGG........................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------1.00---------------------------------------------------------------------
.......ACTTCCGGTGGGGAGATTC................................................................................................................................................................................................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................GCCGGGGCTGGAGAAGGGAAGCGGG..............................................................................................................................2511.001.00----------------------------------------------------------------------------------------------------------------------------------1.00---------
....................AGATTCCGGCCTGGAGCT....................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------------------------------1.00-----
.............................................................................................TGGGGGGCCGGGGCTAACG..........................................................................................................................................191.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................GCCGGGGCTGGAGAAGGGA....................................................................................................................................1911.001.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------
............................................................................................................................CTCCCCACCCGGGATCTGC...........................................................................................................1911.001.00--------------------------------------------------------------------------------------------------------------------------1.00-----------------
.........TTCCGGTGGGGAGATTCC...............................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------1.00----------------------------------------------------------------
.............GGTGGGGAGATTCCGGCCTGGAGC.....................................................................................................................................................................................................................2411.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................CTCCCGGCGCACTCCCAGAATA.............................................................................................................................................................221.000.00------------------------------------------------------------------------------------------------------------------------------------1.00-------
.........................................................................................AGGCTGGGGGGCCGGGGGAC.............................................................................................................................................201.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------
....CGCACTTCCGGTGGGGAGATTCCG..............................................................................................................................................................................................................................2411.001.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
...............................................GAGGTGAGTGGGTGTGCGGCC......................................................................................................................................................................................2111.001.00---------1.00----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................TGGGGGGCCGGGGCTATTG..........................................................................................................................................191.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
.............GGTGGGGAGATTCCGGCCTG.........................................................................................................................................................................................................................2011.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................TTCCGGCCTGGAGCTCCCAGGGC............................................................................................................................................................................................................2311.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------
...............................TGGAGCTCCCAGGGCCGAGG.......................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------------------------------------------------1.00------------
..................................................GTGAGTGGGTGTGCGGCCGGCCT.................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00---------------------------------------------------------------
....................................................................................................................................CCGGGATCTGCGCGGGTTGACATGGGGCACGC......................................................................................3211.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------
............CGGTGGGGAGATTCCGGCCTGGAGCT....................................................................................................................................................................................................................2611.001.00----------------------------------------------------------------------------------------------------------1.00---------------------------------
.....GCACTTCCGGTGGGGAGATTCCGGCC...........................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------------------------------------------------------------------1.00----
.......................................................................................AGAGGCTGGGGGGCCGGGGAGG.............................................................................................................................................221.000.00------------------------------------------------------------------------------------------1.00-------------------------------------------------
....................AGATTCCGGCCTGGAGCTC...................................................................................................................................................................................................................1911.001.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
.........................................................................CCCGGCGCACTCCCAGAGGT.............................................................................................................................................................201.000.00----------1.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGAGAT.............................................................................................................................................................2111.0022.00-------------------------------------------------------------------------1.00------------------------------------------------------------------
.................................................................................ACTCCCAGAGGCTGGGGGGCCGG..................................................................................................................................................2311.001.00---------------------------------------------------1.00----------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCAGAGGA.............................................................................................................................................................2111.0027.00------------------------------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................CCCGGCGCACTCCCAGAGGC.............................................................................................................................................................2011.001.00---------1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................CTCAGTTTCGCCGTCTGTGGAGGGGGCA...................................2811.001.00------------------1.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................CCCGGGATCTGCGCGGGTTGACATGGGGCACGC......................................................................................3311.001.00---------------------------------------------------------------------------------------------------------------------1.00----------------------
.......................................................................CTCCCGGCGCACTCCCAGAGA..............................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------1.00-----------------------------------------------------
......................................................................................CAGAGGCTGGGGGGCCCGGG................................................................................................................................................201.000.00---------------------------------------1.00----------------------------------------------------------------------------------------------------
......................................................................................CAGAGGCTGGGGGGCAAG..................................................................................................................................................181.000.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------
.............GGTGGGGAGATTCCGGCCTGG........................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------------------1.00-----------------------------
................GGGGAGATTCCGGCCTG.........................................................................................................................................................................................................................1711.001.00----------------------------------------1.00---------------------------------------------------------------------------------------------------
...............................TGGAGCTCCCAGGGCCGAG........................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------------------------------------------1.00--------------
...........................................................................................GCTGGGGGGCCGGGGCTGCGGT.........................................................................................................................................221.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
........................................................................TCCCGGCGCACTCCCCGCG...............................................................................................................................................................191.000.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................CTCCCGGCGCACTCCCAGAG...............................................................................................................................................................2011.001.00---------------------------------------1.00----------------------------------------------------------------------------------------------------
.........................................................................................................GCTGGAGAAGGGAAGCGGG..............................................................................................................................1911.001.00---------------------------------------------------------------------------------------1.00----------------------------------------------------
.....................................................................................................................................................................ACGCCCCTGCCCCTCCCCGG.................................................................2011.001.00-----------------------------------------------------------------------------------------------------------1.00--------------------------------
........................................................................TCCCGGCGCACTCCCAGAGC..............................................................................................................................................................2011.0022.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................GATTCCGGCCTGGAGC.....................................................................................................................................................................................................................1621.001.00--------0.50--------------------------------------------------------------------------------------------------------------------------------0.50--
..........................CGGCCTGGAGCTCCCAGGGCCGAG........................................................................................................................................................................................................2411.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................CTCCCGGCGCACTCCCAGAGTCT............................................................................................................................................................2311.001.00--------------------------------------------------------------------1.00-----------------------------------------------------------------------
.....GCACTTCCGGTGGGGAGA...................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------1.00-----------------------------------
.........................................AGGGCCGAGGTGAGTGGGT..............................................................................................................................................................................................1911.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
.........................................................................................AGGCTGGGGGGCCGGGGC...............................................................................................................................................1820.500.50-------------0.50------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................CCCCTGCCCCTCCCCGG.................................................................1740.250.25--------------0.25-----------------------------------------------------------------------------------------------------------------------------
....................................................................................................CCGGGGCTGGAGAAGG......................................................................................................................................1650.200.20-------------------------------------------------------------------------------------------------------------------------------------------0.20

Antisense strand
GCCTCGCACTTCCGGTGGGGAGATTCCGGCCTGGAGCTCCCAGGGCCGAGGTGAGTGGGTGTGCGGCCGGCCTCCCGGCGCACTCCCAGAGGCTGGGGGGCCGGGGCTGGAGAAGGGAAGCGGGCTCCCCACCCGGGATCTGCGCGGGTTGACATGGGGCACGCCACGCCCCTGCCCCTCCCCGGGCCTCAGTTTCGCCGTCTGTGGAGGGGGCAGGGGTCTCCAAGCGCCCTCCTGCAAGGCACCTGCC
...................................................................((((((((((((...(((...)))))))))))))))..(((..........))).................................................................................................................................
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SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR189782SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
..................................AGCTCCCAGGGCCGAGG....................................................................................................................................................................................................... 171.000.00---------------------------------------------------------------1.00----------------------------------------------------------------------------
................................................................................................GGGGCCGGGGCTGGAGAGCG...................................................................................................................................... 201.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-----------
........................................................................................................................CGGGCTCCCCACCCGGGGCGG............................................................................................................. 211.000.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................CGCCCCTGCCCCTCCCCCCTT............................................................... 211.000.00--------------------------------1.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................CGGGCTCCCCACCCGGC................................................................................................................. 171.000.00---------------------------------------------------------------------------------------------------------------------------1.00----------------
..............................................................GCGGCCGGCCTCCCGGGCC......................................................................................................................................................................... 191.000.00----------------------------------------------------------------------------------------------------1.00---------------------------------------
....................................................................................................................................................................................................CCCCTGCCCCCTCCACAGACGGC............................... 2311.001.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------
.........................................................................................AGGCTGGGGGGCCGGGGGAGT............................................................................................................................................ 211.000.00-----------------------------------------------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................CGCCCCTGCCCCTCCACC.................................................................. 181.000.00---------------------1.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGAGGGGCAGGGGCGTG..................................................................... 1720.500.50----------------------------------------------------------------------------------------------------------------------------------------0.50---
....................................................................................................................................................................................................CCCTCCACAGACGGC....................................... 1540.500.50---------------------------------------------0.25--------------------------------------------------------------------------------------------0.25-