ID: uc002xnu.2_intron_3_0_chr20_43964561_r.5p
GENE: (1)
chr20:43976765-43977014-


(1)
AGO2.ip
(3)
B-CELL
(1)
BRAIN
(14)
BREAST
(15)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(3)
HELA
(1)
KIDNEY
(9)
LIVER
(3)
OTHER
(1)
RRP40.ip
(36)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CCCGTCTGTTCGCGCTGCTGCTGTTCTTCGTAGGCGGAGTCGCCGAGTCGGTGGGTGCTTGGAGGTTCCCGGGCTGGGGGCGAAGCGGGGGCGCAGGCCGGTGCCTCCTTTGTTCGTCGGAGCGTGGGATGGGGGGGGGCAGATCGGGGGTACGCTACCCCCAACCGGACACCGAGGCCCGGGAAACTTTGTTGGAAACTTTGCTCCGGGGTCACGGGCCAGCCTCCGGGATGGCTTCACGCGCCGTGCG
.................................................................((((((((((..(((((((..((((((((......))))))))))))))).((((....(((..((((((..(((..((.....))..))).)))))).)))....)))))))))))))).................................................................
................................................................65......................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
TAX577741(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
.....................................................................CGGGCTGGGGGCGAAGCGG..................................................................................................................................................................19118.0018.005.00-2.00---2.00--1.00------1.00-1.00--------------1.00--1.00------------1.00----1.00--------------1.00----1.00----------------------
.....................................................................CGGGCTGGGGGCGAAGCGGG.................................................................................................................................................................20114.0014.00-----5.001.00-1.001.00-------1.001.00---------------1.00----------1.00--------------------1.00--------------1.00---------------
.......................................................................GGCTGGGGGCGAAGCGGG.................................................................................................................................................................18111.0011.006.00-----------------1.00----------------1.00---------------1.00---------------------1.00----------1.00------------
.....................................................................CGGGCTGGGGGCGAAGCGGGGC...............................................................................................................................................................2216.004.00---------1.002.00---1.00-------------------1.00----------------------------------------1.00---------------------
.........................................................................CTGGGGGCGAAGCGGGGC...............................................................................................................................................................1824.001.00-----------------------2.00---------------------------------------1.00----1.00----------------------------
.....................................................................CGGGCTGGGGGCGAAGCGGGG................................................................................................................................................................2114.004.00------------------------------------------1.001.00---1.00----------1.00--------------------------------------
......................................................................GGGCTGGGGGCGAAGCGG..................................................................................................................................................................1814.004.00--1.00------------------2.00------------------------------1.00--------------------------------------------
...............................AGGCGGAGTCGCCGAGTCGGTGGG...................................................................................................................................................................................................2413.003.00---3.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................ACCGGACACCGAGGCATC.....................................................................183.000.00---------------3.00---------------------------------------------------------------------------------
.....................................................................CGGGCTGGGGGCGAAGCG...................................................................................................................................................................1812.002.00-----------------------------------------------------------------------------------1.00--1.00----------
...................................................................CCCGGGCTGGGGGCGAAGCGG..................................................................................................................................................................2112.002.00-------------2.00-----------------------------------------------------------------------------------
......................................................................GGGCTGGGGGCGAAGCGGGGC...............................................................................................................................................................2112.002.00------------------------------1.00----------------------------1.00-------------------------------------
.....................................................................CGGGCTGGGGGCGAAGC....................................................................................................................................................................1712.002.00----------------------------------------1.00-------1.00------------------------------------------------
.....................................................................CGGGCTGGGGGCGAAGCGGGGCTG.............................................................................................................................................................2412.004.00---------------------------2.00---------------------------------------------------------------------
...............................................................GGTTCCCGGGCTGGGGG..........................................................................................................................................................................1712.002.00----1.00-----------1.00--------------------------------------------------------------------------------
......................................................................GGGCTGGGGGCGAAGCGGGG................................................................................................................................................................2012.002.00------------------------------1.00-----1.00------------------------------------------------------------
...................................................................CCCGGGCTGGGGGCGAAGCGGGGGC..............................................................................................................................................................2512.002.00-1.00------------------------------------------------1.00----------------------------------------------
....................CTGTTCTTCGTAGGCGGA....................................................................................................................................................................................................................1812.002.00--------------1.00-----------------------1.00----------------------------------------------------------
...................GCTGTTCTTCGTAGGCGGAG...................................................................................................................................................................................................................2012.002.00--------1.00--1.00-------------------------------------------------------------------------------------
..............................................................AGGTTCCCGGGCTGGGGGC.........................................................................................................................................................................1912.002.00-1.00------------------------1.00----------------------------------------------------------------------
.......................................................................GGCTGGGGGCGAAGCGGGGC...............................................................................................................................................................2012.002.00--------------------1.00------------1.00---------------------------------------------------------------
.......................................................................GGCTGGGGGCGAAGCGGGG................................................................................................................................................................1912.002.00-----------------2.00-------------------------------------------------------------------------------
..............................................................AGGTTCCCGGGCTGGGGG..........................................................................................................................................................................1812.002.00----1.00---------------------1.00----------------------------------------------------------------------
..................................................................TCCCGGGCTGGGGGCGAAG.....................................................................................................................................................................1912.002.00------------------------------------------------------------1.00---1.00--------------------------------
......................................................................GGGCTGGGGGCGAAGCGGG.................................................................................................................................................................1912.002.00-----------------------------2.00-------------------------------------------------------------------
..........................................................................TGGGGGCGAAGCGGGGC...............................................................................................................................................................1731.330.67--------0.33------------0.33---------------------0.33----------------------------------------------0.33------
.........................................................................................................................................GGCAGATCGGGGGTACGCT..............................................................................................1911.001.00----------------------------------------------------------------------1.00--------------------------
....................................................................................................................................GGGGGGGCAGATCGGGGGTAGTG...............................................................................................231.000.00-------------------------1.00-----------------------------------------------------------------------
.................CTGCTGTTCTTCGTAGGCGGAGTCGCC..............................................................................................................................................................................................................2711.001.00----------------------------------------------1.00--------------------------------------------------
...........................................................................................................................GTGGGATGGGGGGGGGACTG...........................................................................................................201.000.00--------------------------------1.00----------------------------------------------------------------
.....................................................................CGGGCTGGGGGCGAAGCGGGGT...............................................................................................................................................................2211.004.00---------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................GCAGATCGGGGGTAC.................................................................................................1521.001.00-------------------------------------------------------------1.00-----------------------------------
...............................AGGCGGAGTCGCCGAGTCGG.......................................................................................................................................................................................................2011.001.00-----------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................GGGGCAGATCGGGGGTCT.................................................................................................181.000.00--1.00----------------------------------------------------------------------------------------------
...................................................................CCCGGGCTGGGGGCGAAGCGGG.................................................................................................................................................................2211.001.00--------1.00----------------------------------------------------------------------------------------
....TCTGTTCGCGCTGCTGCTGTTCT...............................................................................................................................................................................................................................2311.001.00--1.00----------------------------------------------------------------------------------------------
...GTCTGTTCGCGCTGCTGCTGTTCT...............................................................................................................................................................................................................................2411.001.00-----------------------------------------1.00-------------------------------------------------------
.........................................................................CTGGGGGCGAAGCGGGG................................................................................................................................................................1721.001.00---------------------------------------------------------------------------------------0.500.50--------
.........................................................................................................TCCTTTGTTCGTCGGAGCG..............................................................................................................................1911.001.00--------1.00----------------------------------------------------------------------------------------
..............CTGCTGCTGTTCTTCGTAGGCG......................................................................................................................................................................................................................2211.001.00----------1.00--------------------------------------------------------------------------------------
.....CTGTTCGCGCTGCTGCTGTTCTTCGTAGGC.......................................................................................................................................................................................................................3011.001.00----------------------------1.00--------------------------------------------------------------------
...................................................................CCCGGGCTGGGGGCGAAGAGAG.................................................................................................................................................................221.000.00-----------------------------------------------------1.00-------------------------------------------
........................................CGCCGAGTCGGTGGGTGCT...............................................................................................................................................................................................1911.001.00----------------------1.00--------------------------------------------------------------------------
........................................................................................................CTCCTTTGTTCGTCGGAG................................................................................................................................1811.001.00-------------1.00-----------------------------------------------------------------------------------
.........................................................................................................TCCTTTGTTCGTCGGAGCGT.............................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------------
................................GGCGGAGTCGCCGAGTCGG.......................................................................................................................................................................................................1911.001.00-----------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGGAAACTTTGTTGG.......................................................1611.001.00------------------------1.00------------------------------------------------------------------------
..............................................................AGGTTCCCGGGCTGGGGGCGA.......................................................................................................................................................................2111.001.00--------------------------------------1.00----------------------------------------------------------
......................GTTCTTCGTAGGCGGAGTCGCCGAGTCGG.......................................................................................................................................................................................................2911.001.00-------------------1.00-----------------------------------------------------------------------------
...........................................................TGGAGGTTCCCGGGCTGT.............................................................................................................................................................................181.000.00-------------------------------------1.00-----------------------------------------------------------
...........................TCGTAGGCGGAGTCGCCGAGT..........................................................................................................................................................................................................2111.001.00----------------1.00--------------------------------------------------------------------------------
...............................................................................................................GTTCGTCGGAGCGTGGATC........................................................................................................................191.000.00-------------------------------1.00-----------------------------------------------------------------
...............................AGGCGGAGTCGCCGAGTCGGTG.....................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------1.00-------------------
.CCGTCTGTTCGCGCTGCTGCTGT..................................................................................................................................................................................................................................2311.001.00-------1.00-----------------------------------------------------------------------------------------
...............TGCTGCTGTTCTTCGTAGG........................................................................................................................................................................................................................1911.001.00------------1.00------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GCTCCGGGGTCACGGGCCAGC...........................2111.001.00----------------------------1.00--------------------------------------------------------------------
.........................................GCCGAGTCGGTGGGTGCTTGG............................................................................................................................................................................................2111.001.00----------1.00--------------------------------------------------------------------------------------
........TTCGCGCTGCTGCTGTTCTTCGTAGGCGGA....................................................................................................................................................................................................................3011.001.00----1.00--------------------------------------------------------------------------------------------
.....................................................................CGGGCTGGGGGCGAAGCGT..................................................................................................................................................................1911.002.00------------------------1.00------------------------------------------------------------------------
..........CGCGCTGCTGCTGTTCTTCG............................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------1.00----------------------------------
..................................................GTGGGTGCTTGGAGGTTCCCGG..................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------1.00-----------------
................................................................GTTCCCGGGCTGGGGGCGAAGCGGGGGCGCAGGC........................................................................................................................................................3411.001.00------------------------------------------------------------------------------1.00------------------
..............................................................AGGTTCCCGGGCTGGGG...........................................................................................................................................................................1711.001.00-------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................TACGCTACCCCCAACCGGAC................................................................................2011.001.00----------------------------------------------------------------------------------1.00--------------
......................................................................................................GCCTCCTTTGTTCGTCGGAG................................................................................................................................2011.001.00--------------1.00----------------------------------------------------------------------------------
...........................................................................................................................GTGGGATGGGGGGGGTGT.............................................................................................................181.000.00-------------------------------1.00-----------------------------------------------------------------
......................................................................................................GCCTCCTTTGTTCGTCGGAGCG..............................................................................................................................2211.001.00----------------------1.00--------------------------------------------------------------------------
..CGTCTGTTCGCGCTGCTG......................................................................................................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................CGAGGCCCGGGAAACTTT............................................................1811.001.00--------------------------------------------------------------------------------1.00----------------
......................................GTCGCCGAGTCGGTGGGTG.................................................................................................................................................................................................1911.001.00-------------------------------------1.00-----------------------------------------------------------
.........................................GCCGAGTCGGTGGGTGC................................................................................................................................................................................................1711.001.00-1.00-----------------------------------------------------------------------------------------------
............................................................................................................TTTGTTCGTCGGAGCGTGGGATGG......................................................................................................................2411.001.00------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................ACGCTACCCCCAACCGGACACCGAGG.........................................................................2611.001.00------------1.00------------------------------------------------------------------------------------
.....CTGTTCGCGCTGCTGCTGT..................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00-----------------------------------------
.......................................................................................................................GAGCGTGGGATGGGGGAG.................................................................................................................181.000.00--------------------------------------------------------1.00----------------------------------------
......................................................................GGGCTGGGGGCGAAGCGGGGCA..............................................................................................................................................................2211.002.00-------------------------------------------------------------------------------------1.00-----------
..................TGCTGTTCTTCGTAGGCGGAGTCG................................................................................................................................................................................................................2411.001.00------1.00------------------------------------------------------------------------------------------
............................................................................................GCAGGCCGGTGCCTCCTTTGTTCGTC....................................................................................................................................2611.001.00-1.00-----------------------------------------------------------------------------------------------
..................................CGGAGTCGCCGAGTCGG.......................................................................................................................................................................................................1711.001.00----1.00--------------------------------------------------------------------------------------------
...............................AGGCGGAGTCGCCGAGTCGGT......................................................................................................................................................................................................2111.001.00--1.00----------------------------------------------------------------------------------------------
....................................................................................................................TCGGAGCGTGGGATGGGGGGGGCAGA............................................................................................................261.000.00---------------------------------------1.00---------------------------------------------------------
...............................................................................................................................................................................................TTGGAAACTTTGCTCCAGGG.......................................201.000.00-------------------------1.00-----------------------------------------------------------------------
..................................CGGAGTCGCCGAGTC.........................................................................................................................................................................................................1511.001.00----------------------------------------------------------------------------1.00--------------------
........TTCGCGCTGCTGCTGTTCTTCGTAGGCGGAGTCG................................................................................................................................................................................................................3411.001.00-1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TTGGAAACTTTGCTCCGGGGTCACGGG................................2711.001.00-----------1.00-------------------------------------------------------------------------------------
..CGTCTGTTCGCGCTGCTGCTGC..................................................................................................................................................................................................................................221.000.00--------------------1.00----------------------------------------------------------------------------
......................................................................GGGCTGGGGGCGAAGCGGGGCT..............................................................................................................................................................2211.002.00-----------------------------------------------------------------------1.00-------------------------
..........................................................................TGGGGGCGAAGCGGGGCT..............................................................................................................................................................1830.670.67----------------------------------------0.330.33-------------------------------------------------------
..........................................................................TGGGGGCGAAGCGGGG................................................................................................................................................................1630.670.67------------------------------------------0.33------------------------------------------------0.33-----
..........................................................................TGGGGGCGAAGCGGGGCTGG............................................................................................................................................................2030.670.67-------------------0.67-----------------------------------------------------------------------------
........................................................................GCTGGGGGCGAAGCGGG.................................................................................................................................................................1720.500.50-----------------------------------------------------------------------------------------0.50-------
................................................................GTTCCCGGGCTGGGGG..........................................................................................................................................................................1620.500.50----0.50--------------------------------------------------------------------------------------------
................................................................GTTCCCGGGCTGGGGGC.........................................................................................................................................................................1720.500.50-0.50-----------------------------------------------------------------------------------------------
........................TCTTCGTAGGCGGAG...................................................................................................................................................................................................................1520.500.50-0.50-----------------------------------------------------------------------------------------------
...........................................................................GGGGGCGAAGCGGGG................................................................................................................................................................1550.400.40--------------------0.20------------------------------------------------------------------------0.20---
...................................................................................AGCGGGGGCGCAGGC........................................................................................................................................................1550.400.40----------------------------------------------------------------------------------------------0.200.20-
..........................................................................TGGGGGCGAAGCGGGGCTG.............................................................................................................................................................1930.330.67--------------------------------------------------------------------------------------------0.33----
...........................................................................GGGGGCGAAGCGGGGCTGG............................................................................................................................................................1950.200.40----------------------0.20--------------------------------------------------------------------------
...........................................................................GGGGGCGAAGCGGGGCA..............................................................................................................................................................1750.200.40---------------------------------------0.20---------------------------------------------------------
...........................................................................GGGGGCGAAGCGGGGCT..............................................................................................................................................................1750.200.40------------0.20------------------------------------------------------------------------------------
...........................................................................GGGGGCGAAGCGGGGC...............................................................................................................................................................1650.200.40---------------------------------------0.20---------------------------------------------------------
...................................................................................AGCGGGGGCGCAGGCTGGG....................................................................................................................................................1950.200.40--------------------------------------------0.20----------------------------------------------------
..........................................................................TGGGGGCGAAGCGGGCC...............................................................................................................................................................1760.170.17---------------------------------------------0.17---------------------------------------------------
..........................................................................TGGGGGCGAAGCGGG.................................................................................................................................................................1560.170.17--------------------0.17----------------------------------------------------------------------------

Antisense strand
CCCGTCTGTTCGCGCTGCTGCTGTTCTTCGTAGGCGGAGTCGCCGAGTCGGTGGGTGCTTGGAGGTTCCCGGGCTGGGGGCGAAGCGGGGGCGCAGGCCGGTGCCTCCTTTGTTCGTCGGAGCGTGGGATGGGGGGGGGCAGATCGGGGGTACGCTACCCCCAACCGGACACCGAGGCCCGGGAAACTTTGTTGGAAACTTTGCTCCGGGGTCACGGGCCAGCCTCCGGGATGGCTTCACGCGCCGTGCG
.................................................................((((((((((..(((((((..((((((((......))))))))))))))).((((....(((..((((((..(((..((.....))..))).)))))).)))....)))))))))))))).................................................................
................................................................65......................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
TAX577741(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...TACGAAGAACAGCAGCAGCGCGAACAGAC.......................................................................................................................................................................................................................... 2912.002.00-------2.00-----------------------------------------------------------------------------------------
..........................................................................................................................CCCCCCCCCATCCCACG............................................................................................................... 1711.001.00-------1.00-----------------------------------------------------------------------------------------
...............................................TCGGTGGGTGCTTGGTCA......................................................................................................................................................................................... 181.000.00---------------------------------------------------------1.00---------------------------------------
....TCTGTTCGCGCTGCTGTCT................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------------1.00-------------------------------
..............CTGCTGCTGTTCTTCGG........................................................................................................................................................................................................................... 171.000.00-----------------------------------1.00-------------------------------------------------------------
..............................................................................................AGGCCGGTGCCTCCTTGG.......................................................................................................................................... 181.000.00--------------------------------------------1.00----------------------------------------------------
...........................................................................GGGGGCGAAGCGGGGGGCC............................................................................................................................................................ 1951.000.00-------------------------------------------------------------------1.00-----------------------------
................................GGCGGAGTCGCCGAGCC......................................................................................................................................................................................................... 171.000.00------------------------------------------------------------------------1.00------------------------
....TCTGTTCGCGCTGCTGTCTG.................................................................................................................................................................................................................................. 201.000.00--------------------------------1.00----------------------------------------------------------------
.........................................................................................................................CCCCCCATCCCACGC.................................................................................................................. 1520.500.50-------0.50-----------------------------------------------------------------------------------------
...........................................................................................................................CCCCCCCCATCCCAC................................................................................................................ 1590.110.11------------------------------------------------------------------------------------------------0.11