ID: uc002xnu.2_intron_2_0_chr20_43961710_r.5p
GENE: (2)
chr20:43964222-43964471-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(24)
SKIN 		(1)
XRN.ip

Sense strand
GCCCGGGCAGGAATCTGATGACTTTGAGCTGTCTGGCTCTGGAGATCTGGGTACGGAAGGTGTGCTGGGCAGGCGTAGGCACAAAGCTGGAGGGAGTGGTGGCTTCACCAGCCAGGAGGGTGACCATGCCTTGAGACTTGGATTTTTGTGGGACTTTTCCTAGAGTGCCCTTCTTCCTTCTCAAAAAAAGGGGAAACAAAAGTAATGGATTAACCTATTCCATCCCTGAGAGCCCCTGGGGACAAGCTGT
............................................................................(((((....(((((..(((((....))))).))))).....((....)).)))))(((((...(((.......((((((((....))))).)))....))).)))))...................................................................
........................................................................73.............................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.............................................................................GGCACAAAGCTGGAGTACA..........................................................................................................................................................19105.000.00105.00-----------------------------------------------------
.............................................................................GGCACAAAGCTGGAGTAC...........................................................................................................................................................1824.000.0024.00-----------------------------------------------------
.............................................................................GGCACAAAGCTGGAGGACAC.........................................................................................................................................................2010.000.0010.00-----------------------------------------------------
..................................................................................................................................................................GAGTGCCCTTCTTCCTGG......................................................................1810.000.00-2.00----------2.001.00-2.00-----1.001.00---------------1.00---------------
.............................................................................GGCACAAAGCTGGAGTACC..........................................................................................................................................................199.000.009.00-----------------------------------------------------
.............................................................................GGCACAAAGCTGGAGTATT..........................................................................................................................................................195.000.005.00-----------------------------------------------------
..................................................................................................................................................................GAGTGCCCTTCTTCCTGGGA....................................................................204.000.00---------1.00-------------1.001.00--------1.00--------------------
.............................................................................GGCACAAAGCTGGAGGACA..........................................................................................................................................................194.000.004.00-----------------------------------------------------
.............................................................................GGCACAAAGCTGGAGTA............................................................................................................................................................173.000.003.00-----------------------------------------------------
......GCAGGAATCTGATGACTTTGAGCTGTCTGGC.....................................................................................................................................................................................................................3113.003.00-2.00--------------1.00-------------------------------------
....................ACTTTGAGCTGTCTGGCTCTGGAGATCTGGA.......................................................................................................................................................................................................313.000.00-------3.00----------------------------------------------
......................TTTGAGCTGTCTGGCTCTGGAGATCTGGA.......................................................................................................................................................................................................2913.001.00-3.00----------------------------------------------------
.......CAGGAATCTGATGACTTTGAGC.............................................................................................................................................................................................................................2212.002.00-----------2.00------------------------------------------
.............................................................................GGCACAAAGCTGGAGGACAA.........................................................................................................................................................202.000.002.00-----------------------------------------------------
................GATGACTTTGAGCTGTCTGGCTCTG.................................................................................................................................................................................................................2512.002.00----2.00-------------------------------------------------
..................................................................................................................................................................GAGTGCCCTTCTTCCTTG......................................................................182.000.00---2.00--------------------------------------------------
..............CTGATGACTTTGAGCTCTG.........................................................................................................................................................................................................................192.000.00-----2.00------------------------------------------------
.................................TGGCTCTGGAGATCTGG........................................................................................................................................................................................................1722.002.00------------------------------------------------0.50-0.500.500.50-
.............................................................................GGCACAAAGCTGGAGGAC...........................................................................................................................................................182.000.002.00-----------------------------------------------------
.......................TTGAGCTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2712.002.00------2.00-----------------------------------------------
..............CTGATGACTTTGAGCTGTCTGGC.....................................................................................................................................................................................................................2312.002.00--------------1.00---1.00-----------------------------------
.....................CTTTGAGCTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2912.002.00------2.00-----------------------------------------------
...................................................................................................................................................................AGTGCCCTTCTTCCTGGGA....................................................................192.000.00---------------------------------------1.00--1.00-----------
.................ATGACTTTGAGCTGTCTGGCTCTGGAG..............................................................................................................................................................................................................2712.002.00--------2.00---------------------------------------------
.............................................................................GGCACAAAGCTGGAGTACT..........................................................................................................................................................192.000.002.00-----------------------------------------------------
.....GGCAGGAATCTGATGACTTTGAG..............................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00-------
...................................GCTCTGGAGATCTGGATGA....................................................................................................................................................................................................191.000.00--1.00---------------------------------------------------
............ATCTGATGACTTTGAGCTGTC.........................................................................................................................................................................................................................2111.001.00-------------------------------1.00----------------------
....................ACTTTGAGCTGTCTGGC.....................................................................................................................................................................................................................1711.001.00----------1.00-------------------------------------------
....GGGCAGGAATCTGATGACTTTG................................................................................................................................................................................................................................2211.001.00-----1.00------------------------------------------------
........................TGAGCTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2611.001.00------------------------------------1.00-----------------
.................................TGGCTCTGGAGATCTGGATGA....................................................................................................................................................................................................2121.002.00---0.50---------------------------------------------0.50----
.....................CTTTGAGCTGTCTGGCTCTGGAGATCTGGATG.....................................................................................................................................................................................................3211.002.00---------------------------------------------1.00--------
.....GGCAGGAATCTGATGACT...................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00---------
..................................................................................................................................................................GAGTGCCCTTCTTCCTGGG.....................................................................191.000.00-----------------------------1.00------------------------
.............................................................................GGCACAAAGCTGGAGCACT..........................................................................................................................................................191.000.001.00-----------------------------------------------------
....GGGCAGGAATCTGATGACTTTGA...............................................................................................................................................................................................................................2311.001.00----1.00-------------------------------------------------
..........................AGCTGTCTGGCTCTGGAGATC...........................................................................................................................................................................................................2111.001.00--1.00---------------------------------------------------
...CGGGCAGGAATCTGATGACTTTGAG..............................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------------
..............................GTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2011.001.00-----------------------------------------1.00------------
............ATCTGATGACTTTGAGCTG...........................................................................................................................................................................................................................1911.001.00-1.00----------------------------------------------------
.............................TGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2111.001.00-------------------1.00----------------------------------
...........................GCTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2311.001.00---1.00--------------------------------------------------
...........................GCTGTCTGGCTCTGGAGATC...........................................................................................................................................................................................................2011.001.00---1.00--------------------------------------------------
...........................................................................................................................................GGATTTTTGTGGGACTCTG............................................................................................191.000.00-------------------------------------1.00----------------
.............TCTGATGACTTTGAGCTG...........................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------
..........................AGCTGTCTGGCTCTGGAG..............................................................................................................................................................................................................1811.001.00--1.00---------------------------------------------------
....................................................................................AGCTGGAGGGAGTGGCGTG...................................................................................................................................................191.000.00--------1.00---------------------------------------------
............................CTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2211.001.00----------------------------------------1.00-------------
........AGGAATCTGATGACTTTGAGC.............................................................................................................................................................................................................................2111.001.00-1.00----------------------------------------------------
...................GACTTTGAGCTGTCTGGCT....................................................................................................................................................................................................................1911.001.00---------------------------1.00--------------------------
..............................GTCTGGCTCTGGAGATC...........................................................................................................................................................................................................1711.001.00--1.00---------------------------------------------------
.............................................................................GGCACAAAGCTGGAGGACCC.........................................................................................................................................................201.000.001.00-----------------------------------------------------
...............TGATGACTTTGAGCTGTCTGGCTCTGA................................................................................................................................................................................................................271.000.00-------------------------1.00----------------------------
....................................................................................................................................................................................................CAAAAGTAATGGATTTCT....................................181.000.00-----------------1.00------------------------------------
.........................GAGCTGTCTGGCTCTGGAGATCTGGATGA....................................................................................................................................................................................................291.000.00---1.00--------------------------------------------------
.........................GAGCTGTCTGGCTCTGGAGATC...........................................................................................................................................................................................................2211.001.00------------------------------1.00-----------------------
.......................................................................................................................................................................CCCTTCTTCCTTCTCATGA................................................................191.000.00--------------------------1.00---------------------------
...CGGGCAGGAATCTGATGACTTTGAGC.............................................................................................................................................................................................................................2611.001.00--------------------------------1.00---------------------
..CCGGGCAGGAATCTGATGACTTTGAG..............................................................................................................................................................................................................................2611.001.00----------------1.00-------------------------------------
......................TTTGAGCTGTCTGGCTCTGGAGATCTGG........................................................................................................................................................................................................2811.001.00---------1.00--------------------------------------------
.......CAGGAATCTGATGACTTTGAGCTGTCTG.......................................................................................................................................................................................................................2811.001.00-----------------------------------1.00------------------
.........................GAGCTGTCTGGCTCTGGAGATCTGGAT......................................................................................................................................................................................................271.000.00-------------------------------------------1.00----------
..............CTGATGACTTTGAGCTGTC.........................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00------
............................CTGTCTGGCTCTGGAGATCTGGATG.....................................................................................................................................................................................................2511.001.00----------1.00-------------------------------------------
.............................TGTCTGGCTCTGGAGATCT..........................................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------
.............................................................................GGCACAAAGCTGGAGGAAAC.........................................................................................................................................................201.000.001.00-----------------------------------------------------
.............................................................................GGCACAAAGCTGGAGCACA..........................................................................................................................................................191.000.001.00-----------------------------------------------------
................GATGACTTTGAGCTGTCTGGC.....................................................................................................................................................................................................................2111.001.00--------------1.00---------------------------------------
......................TTTGAGCTGTCTGGCTCTGGAGATC...........................................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------
.............................................................................GGCACAAAGCTGGAGTAAA..........................................................................................................................................................191.000.001.00-----------------------------------------------------
...........AATCTGATGACTTTGAGCTGTCTGGCTCTGG................................................................................................................................................................................................................3111.001.00-----1.00------------------------------------------------
................................................................................................................................................TTTGTGGGACTTTTCATGC.......................................................................................191.000.00-------------1.00----------------------------------------
...................................................TACGGAAGGTGTGCTAG......................................................................................................................................................................................171.000.00--------------------1.00---------------------------------
........................................................................................................................................................................................................................................CCCCTGGGGACAAGCTGT1820.500.50-----------------------------------------------------0.50
................................................................................................................................................................................CTTCTCAAAAAAAGGG..........................................................1630.330.33----0.33-------------------------------------------------
.....................CTTTGAGCTGTCTGG......................................................................................................................................................................................................................1580.250.25---0.12--------------------------------------------0.12-----
............................................................................AGGCACAAAGCTGGAG..............................................................................................................................................................1690.110.11-----0.11------------------------------------------------

Antisense strand
GCCCGGGCAGGAATCTGATGACTTTGAGCTGTCTGGCTCTGGAGATCTGGGTACGGAAGGTGTGCTGGGCAGGCGTAGGCACAAAGCTGGAGGGAGTGGTGGCTTCACCAGCCAGGAGGGTGACCATGCCTTGAGACTTGGATTTTTGTGGGACTTTTCCTAGAGTGCCCTTCTTCCTTCTCAAAAAAAGGGGAAACAAAAGTAATGGATTAACCTATTCCATCCCTGAGAGCCCCTGGGGACAAGCTGT
............................................................................(((((....(((((..(((((....))))).))))).....((....)).)))))(((((...(((.......((((((((....))))).)))....))).)))))...................................................................
........................................................................73.............................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................CAAAAAAAGGGGAAACAT................................................... 181.000.00-----------------1.00------------------------------------
..................................................................................AAAGCTGGAGGGAGTGGCT..................................................................................................................................................... 191.000.00----------------------------1.00-------------------------