ID: uc002xjy.1_intron_2_0_chr20_39993798_r.5p
GENE: EMILIN3(1)
chr20:39994908-39995157-


(3)
AGO2.ip 		(4)
B-CELL 		(6)
BREAST 		(12)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(3)
UTERUS

Sense strand
AGTCTCTACACGACGGGATGGCGCCCGCGGCTGCGCCCGGGGCCGCACAAGTAAGCGCGGGCGGGCGGCGGGCGGGAAGAGGGAGGGATGGGCCCGCGCGCGTCGCCGCTCCCACCTGCCCGCACCCGCGGGGGGCGTCGAGGCCCCGGGCACCCCGAGGCCGCTGCACAGAGGGGGCGGCGCCCGGGGCCGAGCCCCTGCCCAGGCGAGCGCCCTACGCTCCGGGAGGTTGCGGGGCTGGCGAGGAAAA
............................................................(((((..(((((((((....((((((((((.((....)).)))).))..)))).))))))))).))))).((((((.....((((((((((.((.....(((.((.......)).))))).))))))))))..))))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGGG.................................................19546.000.00331.00211.00-------1.00--1.00----1.001.00---------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGG..................................................188.000.005.002.00-------1.00------------------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGCG.................................................194.000.002.002.00--------------------------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGGT.................................................193.000.001.001.00---------------------------1.00----------------
.........................................................CGGGCGGGCGGCGGGTA................................................................................................................................................................................173.000.00----------1.00--------1.00------------1.00-------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGGC.................................................193.000.001.002.00--------------------------------------------
........................................................GCGGGCGGGCGGCGG...................................................................................................................................................................................1502.002.00----2.00-----------------------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCCGGGG................................................202.000.002.00---------------------------------------------
..................................................................................................................................................................................................................................AGGTTGCGGGGCTGGGGG......181.000.00-----------1.00----------------------------------
.............................................................CGGGCGGCGGGCGGGAAA...........................................................................................................................................................................1811.001.00---1.00------------------------------------------
.................................................................................................................................................................................CGGCGCCCGGGGCCGGGCC......................................................191.000.00-----------------------------------1.00----------
...........................................................GGCGGGCGGCGGGCGGAGG............................................................................................................................................................................191.000.00--1.00-------------------------------------------
........................................................................CGGGAAGAGGGAGGGATGA...............................................................................................................................................................191.000.00-------------------------------------1.00--------
...........................................................GGCGGGCGGCGGGCGGTCG............................................................................................................................................................................191.000.00--1.00-------------------------------------------
..........................................................GGGCGGGCGGCGGGCGAGC.............................................................................................................................................................................191.000.00-----1.00----------------------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCCGGG.................................................191.000.00--------------------1.00-------------------------
...............................................................................................GCGCGCGTCGCCGCTCGAC........................................................................................................................................191.000.00------1.00---------------------------------------
.........................................................CGGGCGGGCGGCGGGAAAA..............................................................................................................................................................................191.000.00---------------------------1.00------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGA..................................................181.000.00-1.00--------------------------------------------
......................................................................GGCGGGAAGAGGGAGTTTT.................................................................................................................................................................191.000.00------------------------------------1.00---------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGG...................................................171.000.00-1.00--------------------------------------------
......................................................................................................................................................................................CCCGGGGCCGAGCCCGGGA.................................................191.000.001.00---------------------------------------------
...........................CGGCTGCGCCCGGGGCCG.............................................................................................................................................................................................................1821.001.00----------------------------------------0.50-0.50---
.............................................CACAAGTAAGCGCGGTGTT..........................................................................................................................................................................................191.000.00--------------------------------------1.00-------
......................................................................................................................................................................................................................................TGCGGGGCTGGCGAGGGAA.191.000.00-1.00--------------------------------------------
........................................................GCGGGCGGGCGGCGGGCGCGGG............................................................................................................................................................................221.000.00----------------------1.00-----------------------
.............................................................................................................................................................................GGGGCGGCGCCCGGGGGA...........................................................181.000.001.00---------------------------------------------
.........................................................CGGGCGGGCGGCGGGCGA...............................................................................................................................................................................181.000.00-------------------------------1.00--------------
............................................................GCGGGCGGCGGGCGGGAA............................................................................................................................................................................1811.001.00----------------------------------1.00-----------
.........................................................CGGGCGGGCGGCGGGAAA...............................................................................................................................................................................181.000.00------------------------1.00---------------------
........................................................GCGGGCGGGCGGCGGGTA................................................................................................................................................................................181.000.00---------------1.00------------------------------
...........................................................GGCGGGCGGCGGGCGGTA.............................................................................................................................................................................181.000.00--1.00-------------------------------------------
.........................................................CGGGCGGGCGGCGGGTGAG..............................................................................................................................................................................191.000.00----------------------------1.00-----------------
.............................................................CGGGCGGCGGGCGGGAA............................................................................................................................................................................1711.001.00---1.00------------------------------------------
.........................................................CGGGCGGGCGGCGGGCGGG..............................................................................................................................................................................1960.330.33-------------------------------------------0.170.17-
........................................................GCGGGCGGGCGGCGGGCGG...............................................................................................................................................................................1940.250.25----0.25-----------------------------------------
............................................................................................................................................AGGCCCCGGGCACCC...............................................................................................1580.120.12---------------------------------------------0.12

Antisense strand
AGTCTCTACACGACGGGATGGCGCCCGCGGCTGCGCCCGGGGCCGCACAAGTAAGCGCGGGCGGGCGGCGGGCGGGAAGAGGGAGGGATGGGCCCGCGCGCGTCGCCGCTCCCACCTGCCCGCACCCGCGGGGGGCGTCGAGGCCCCGGGCACCCCGAGGCCGCTGCACAGAGGGGGCGGCGCCCGGGGCCGAGCCCCTGCCCAGGCGAGCGCCCTACGCTCCGGGAGGTTGCGGGGCTGGCGAGGAAAA
............................................................(((((..(((((((((....((((((((((.((....)).)))).))..)))).))))))))).))))).((((((.....((((((((((.((.....(((.((.......)).))))).))))))))))..))))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
......................................................................................................................CCCGCACCCGCGGGGGG................................................................................................................... 173.000.00-2.00-------------------------------1.00------------
............................................................................................................................................................................GGGGGCGGCGCCCGGGGGGG.......................................................... 203.000.002.001.00--------------------------------------------
...................................................................................................................................GGGGCGTCGAGGCCCCGGG.................................................................................................... 192.000.002.00---------------------------------------------
..............................................................................................................................................................................GGGCGGCGCCCGGGGGGA.......................................................... 181.000.00-1.00--------------------------------------------
........................................................................................................................................................CCCCGAGGCCGCTGCCG................................................................................. 171.000.001.00---------------------------------------------
...............................................................................................................CCACCTGCCCGCACCCTT......................................................................................................................... 181.000.00---------------------1.00------------------------
...................................................................GCGGGCGGGAAGAGGGAGTCT.................................................................................................................................................................. 211.000.00------1.00---------------------------------------
..........................................................................GGAAGAGGGAGGGATGCCA............................................................................................................................................................. 191.000.00-------------------------1.00--------------------
.............................................................................................................................................................................GGGGCGGCGCCCGGGGCGGGG........................................................ 211.000.00--------1.00-------------------------------------
......................................................................................................................CCCGCACCCGCGGGGGGG.................................................................................................................. 181.000.00--------1.00-------------------------------------
.........................................................................................................CCGCTCCCACCTGCCCAGG.............................................................................................................................. 191.000.00--------------------------1.00-------------------
...................................CCCGGGGCCGCACAAGTG..................................................................................................................................................................................................... 181.000.00--------------1.00-------------------------------
.....................................................................................................................GCCCGCACCCGCGGGGCGG.................................................................................................................. 191.000.00----------------1.00-----------------------------
............................................................................................................................................................................GGGGGCGGCGCCCGGGCC............................................................ 181.000.00-1.00--------------------------------------------
.....................................................................................................................GCCCGCACCCGCGGGG..................................................................................................................... 161.000.001.00---------------------------------------------
.............................................................CGGGCGGCGGGCGGGTC............................................................................................................................................................................ 171.000.00---1.00------------------------------------------
........................................................................................................CCCCGCGGGTGCGGGCAGGTGGGAGCGGC..................................................................................................................... 2911.001.00-----------------------1.00----------------------
............................................................................................................................................................................GGGGGCGGCGCCCGGGGG............................................................ 181.000.00-------1.00--------------------------------------
....................GCGCCCGCGGCTGCGGCG.................................................................................................................................................................................................................... 181.000.00-------------1.00--------------------------------
.........................................................................................GGGCCCGCGCGCGTCCAA............................................................................................................................................... 181.000.00---------------------------------------1.00------
........................................................GCGGGCGGGCGGCGGGCGGGCCCC.......................................................................................................................................................................... 241.000.00-------1.00--------------------------------------
........................................................................................................................................................................................................CCCAGGCGAGCGCCCAAT................................ 181.000.00-----1.00----------------------------------------
............................................................CCCGCCCGCCGCCCGC.............................................................................................................................................................................. 1601.001.00------------------------------1.00---------------
..................CAGCCGCGGGCGCCA......................................................................................................................................................................................................................... 1520.500.50----------0.50-----------------------------------
...............................................................................................................GGGTGCGGGCAGGTGG........................................................................................................................... 1620.500.50-----------------------------------------0.50----