ID: uc002xhr.2_intron_6_0_chr20_36770602_r.3p
GENE: (6)
chr20:36770552-36770801-


(1)
B-CELL
(3)
BRAIN
(9)
BREAST
(7)
CELL-LINE
(11)
CERVIX
(5)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(3)
SKIN
(1)
UTERUS

Sense strand
ACTGTGATGTGAGGGGCATAGAATGGACATGGGGTGACCAGAGAGGTGGGCGCCATTGTCCCGGCAGGAAGGGCTGGCTCATGTTCTCAGCACTTGGACAGCAGGTACAGTGTTCCCTGGAATGCAGATGGGCAGGTGGAGGCCCAGAGCAGGGCGGATGTCTCCAGGACCTCACCCCGCTTTCCACTCCTCTCCAACAGTGCTGAGGTGCCTGGGCATCCCTACCCGCGTCGTGACCAACTACAACTCG
...................................................................................................................((((((.(((...(((((........)))))..))).(((....)))))))))..................................................................................
...................................................................................................100...................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormTAX577744(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
TAX577739(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR040012(GSM532897)
G648N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040015(GSM532900)
G623T. (cervix)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189787
........................................................................................................GTACAGTGTTCCCTGGAATCCCT...........................................................................................................................2318.006.002.00---2.00-1.00-1.00---1.00--1.00----------------------------
........................................................................................................GTACAGTGTTCCCTGGAAT...............................................................................................................................1916.006.001.005.00------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGTGT...............................................................................................................................195.000.00-2.001.00-----------1.00-----------1.00-----------------
........................................................................................................GTACAGTGTTCCCTGGATT...............................................................................................................................194.000.001.00--------2.00----1.00-----------------------------
........................................................................................................GTACAGTGTTCCCTGGAATCC.............................................................................................................................2113.006.00--------1.00-------------------1.00--1.00------------
........................................................................................................GTACAGTGTTCCCTGGAATCCTT...........................................................................................................................2313.006.001.00-----1.00---1.00---------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATCCC............................................................................................................................2213.006.001.00-1.00------------1.00----------------------------
........................................................................................................GTACAGTGTTCCCTGGATTCC.............................................................................................................................213.000.001.00-1.00-----------------------------1.00-----------
........................................................................................................GTACAGTGTTCCCTGGAGT...............................................................................................................................192.000.00-2.00------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATC..............................................................................................................................2012.006.00-1.00-----------1.00------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATCCT............................................................................................................................2212.006.001.00-----1.00-------------------------------------
.....................................................................................................................................................................................................................GGGCATCCCTACCCGCGTCGTGACC............2512.002.00-----2.00--------------------------------------
........................................................................................................GTACAGTGTTCCCTGGTTT...............................................................................................................................192.000.00--1.00----------1.00------------------------------
........................................................................................................GTACAGTGTTCCCTGGACT...............................................................................................................................192.000.00--2.00-----------------------------------------
...............................................................................................................................................................................................................................ACCCGCGTCGTGACC............1512.002.00-----1.00-1.00------------------------------------
..............................................................................................................................................................................................................................TACCCGCGTCGTGACCAACT........2011.001.00------------------1.00-------------------------
........................................................................................................GTACAGTGTTCCCTGGAATTCTT...........................................................................................................................2311.006.00--------1.00-----------------------------------
..................................................................................................................................................GAGCAGGGCGGATGTATTG.....................................................................................191.000.00-----------------------1.00--------------------
........................................................................................................GTACAGTGTTCCCTGGATTCA.............................................................................................................................211.000.00------1.00-------------------------------------
........................................................................................................GTACAGTGTTCCCTGTATT...............................................................................................................................191.000.00-----------1.00--------------------------------
....................................................................................................................................................................................................................TGGGCATCCCTACCCGCGTCGTGACC............2611.001.00-------1.00------------------------------------
...GTGATGTGAGGGGCATAGAATG.................................................................................................................................................................................................................................2211.001.00-------------------------1.00------------------
........................................................................................................GTACAGTGTTCCCTGGAATCTCT...........................................................................................................................2311.006.001.00-------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGTGTT..............................................................................................................................201.000.00------------1.00-------------------------------
........................................................................................................GTACAGTGTTCCCTGGAAGGCC............................................................................................................................221.000.00----------1.00---------------------------------
.................................................................................................................................................................................................................................CCGCGTCGTGACCAAC.........1611.001.00-----1.00--------------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATCCCG...........................................................................................................................2311.006.001.00-------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGATAA..............................................................................................................................201.000.001.00-------------------------------------------
.............................................................................................................................................................................................................................CTACCCGCGTCGTGACCAACTACAAA...261.000.00----------------------------------1.00---------
........................................................................................................GTACAGTGTTCCCTGTAAT...............................................................................................................................191.000.00-----------1.00--------------------------------
........................................................................................................GTACAGTGTTCCCTGGAAA...............................................................................................................................191.000.001.00-------------------------------------------
.......................................................................................CAGCACTTGGACAGCAG..................................................................................................................................................1711.001.00------------------------------1.00-------------
........................................................................................................GTACAGTGTTCCCTGGCATC..............................................................................................................................201.000.00-----------------1.00--------------------------
.............................................................................................................................................GCCCAGAGCAGGGCGGT............................................................................................171.000.00---------------------1.00----------------------
........................................................................................................GTACAGTGTTCCCTGGAATTCT............................................................................................................................2211.006.00-------------------------------------1.00------
.............................................................................................................................................................................................................................CTACCCGCGTCGTGACCAACTAC......2311.001.00--------------------------------------1.00-----
..................................................................................................................................................................................................................................CGCGTCGTGACCAACTACA.....1911.001.00----------------------1.00---------------------
......................................................................................................................................................................................................AGTGCTGAGGTGCCTGGG..................................1811.001.00------------------------1.00-------------------
..............................................................................................................................................................................................................................TACCCGCGTCGTGACCAACTAC......2211.001.00-------1.00------------------------------------
...............................................................................................................................................................................................................................ACCCGCGTCGTGACCAACT........1911.001.00-------------------1.00------------------------
........................................................................................................GTACAGTGTTCCCTGGAATGCTTT..........................................................................................................................241.000.00----1.00---------------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATAT.............................................................................................................................2111.006.00----1.00---------------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATACCT...........................................................................................................................2311.006.00---------1.00----------------------------------
........................................................................................................GTACAGTGTTCCCTGGAATCTTA...........................................................................................................................2311.006.001.00-------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGCAT...............................................................................................................................191.000.00-1.00------------------------------------------
........................................................................................................GTACAGTGTTCCCTGGATTA..............................................................................................................................201.000.001.00-------------------------------------------
........................................................................................................GTACAGTGTTCCCTGTGAT...............................................................................................................................191.000.00-----------------------------------------1.00--
........................................................................................................GTACAGTGTTCCCTGGTAT...............................................................................................................................191.000.00-1.00------------------------------------------
.............................................................................................................................................................................................................................CTACCCGCGTCGTGACCA...........1811.001.00------------------------------------1.00-------
........................................................................................................GTACAGTGTTCCCTGGAATGCTT...........................................................................................................................231.000.001.00-------------------------------------------
......................................................................................................................................................................................................................GGCATCCCTACCCGCGTCGTGACCA...........2511.001.00-----------------------------------1.00--------

Antisense strand
ACTGTGATGTGAGGGGCATAGAATGGACATGGGGTGACCAGAGAGGTGGGCGCCATTGTCCCGGCAGGAAGGGCTGGCTCATGTTCTCAGCACTTGGACAGCAGGTACAGTGTTCCCTGGAATGCAGATGGGCAGGTGGAGGCCCAGAGCAGGGCGGATGTCTCCAGGACCTCACCCCGCTTTCCACTCCTCTCCAACAGTGCTGAGGTGCCTGGGCATCCCTACCCGCGTCGTGACCAACTACAACTCG
...................................................................................................................((((((.(((...(((((........)))))..))).(((....)))))))))..................................................................................
...................................................................................................100...................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormTAX577744(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
TAX577739(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
TAX577742(Rovira)
total RNA. (breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR040012(GSM532897)
G648N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040015(GSM532900)
G623T. (cervix)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189787
.......................................................................................................................................................................................................................GCATCCCTACCCGCGAAA................. 186.000.00---5.00-----------------------------------1.00----
.......................................................................................................................................................................................................................GCATCCCTACCCGCGACA................. 181.000.00---------------------------1.00----------------
................................................................................................................................................................................................CCTCAGCACTGTTGGA.......................................... 1611.001.00----------------------------------------1.00---
.......................................AGAGAGGTGGGCGCCTA.................................................................................................................................................................................................. 171.000.00---------------------------------1.00----------
.......................................................................................................................................GTGGAGGCCCAGAGCAGGT................................................................................................ 191.000.00----------------1.00---------------------------
.......................................................................................................................................................................................................................GCATCCCTACCCGCGACC................. 181.000.00-----------------------------1.00--------------
.......................................................................................................................................................GGGCGGATGTCTCCACGGG................................................................................ 191.000.00----1.00---------------------------------------
..........................................................................................................................................................................................CTCCTCTCCAACAGTGCA.............................................. 181.000.00--------------------1.00-----------------------
.......................................................................................................................................................................................................................GCATCCCTACCCGCGGCA................. 181.000.00---1.00----------------------------------------
....................................................................................................................................................................................TTTCCACTCCTCTCCACA.................................................... 181.000.00-1.00------------------------------------------
....................................................................................................................................................................................TTGGAGAGGAGTGGAAA..................................................... 1750.200.20------------------------------------------0.20-
.............................................................................................................................................................................................AGCACTGTTGGAGAG.............................................. 1590.110.11-------------------------------------------0.11