ID: uc002xgh.1_intron_5_0_chr20_35539737_r.3p
GENE: (10)
chr20:35539687-35539936-


(14)
B-CELL
(3)
BRAIN
(17)
BREAST
(3)
CELL-LINE
(2)
CERVIX
(2)
LIVER
(3)
OTHER
(7)
SKIN

Sense strand
GCGACAGTGCCTGGAACACAGTAAGCATGGCAGCTCACAGCTTACCAAGCACAAATTTAGTACGGTGGAGAAGCAGTTGTCTTTAGAACACTGTGCCTCATTATTTTGTTTCCCTAAAGTAGAAAGATTTCCTTAAGTAAGACATAAGGCAAATATTCAAAATTTCTCATAAACATAAATTTTTGCAAAATGATTTTTAGGATTACAGATGCTTTCCTCAAAGCAGATGACTACATAGAGATTACAGGTG
....................................................((((((.((((((((.(((.((....)).)))....))))))))....((((((((......))))))))..))))))........................................................................................................................
..................................................51.................................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................CCCTAAAGTAGAAAGCACT........................................................................................................................1945.000.008.006.00-2.002.001.001.001.002.00-2.00-1.002.00-----1.001.00-1.00-1.00-1.001.001.00-1.001.00---1.00--1.00--1.001.001.001.00-1.001.00---
................................................................................................................CCTAAAGTAGAAAGAACTA.......................................................................................................................193.000.00---1.00--------1.00--------------------1.00-----------------
..............................................................................................................TCCCTAAAGTAGAAAGCACT........................................................................................................................202.000.00-------------------------------------1.00-------1.00-----
...............................................................................................................CCCTAAAGTAGAAAGCAC.........................................................................................................................182.000.00-------1.00-------------------------------1.00-----------
.......................................................................................................................................................................................................................................TACATAGAGATTACAGGTG1912.002.00-------------------------1.00----------------------1.00--
....................................................................................................TTATTTTGTTTCCCTAAATAC.................................................................................................................................211.000.00------------------------------------1.00--------------
................................................................................................................................................................................AAATTTTTGCAAAATGATTTTTAGGATTACAGA.........................................3311.001.00---------------1.00-----------------------------------
.................................................................................................................................................................................................TTTTTAGGATTACAGATGCTTTC..................................2311.001.00------1.00--------------------------------------------
...............................................................................................................CCCTAAAGTAGAAAGCA..........................................................................................................................171.000.00-----1.00---------------------------------------------
...................................................................................................................AAAGTAGAAAGATTTCCAAG...................................................................................................................201.000.00----------------------------------1.00----------------
..............................................................................................................TCCCTAAAGTAGAAAGCACA........................................................................................................................201.000.00--------------------------------1.00------------------
................................................................GTGGAGAAGCAGTTGTCTT.......................................................................................................................................................................1911.001.00-----------1.00---------------------------------------
...............................................................................................................................................................................TAAATTTTTGCAAAAAAT.........................................................181.000.00-----------------1.00---------------------------------
............................................................................................................................................................................................................ACAGATGCTTTCCTCAAAGCAG........................2211.001.00-----------------------1.00---------------------------
......................................................................................AACACTGTGCCTCATTATT.................................................................................................................................................1911.001.00--------------1.00------------------------------------
...............................................................................................................CCCTAAAGTAGAAAGCCCT........................................................................................................................191.000.00---------1.00-----------------------------------------
..............................................................................................................TCCCTAAAGTAGAAAGCCGT........................................................................................................................201.000.00---------1.00-----------------------------------------
.......................................................TTTAGTACGGTGGAGAAGC................................................................................................................................................................................1911.001.00----------------1.00----------------------------------
.......................................................................................................................................................................................TGCAAAATGATTTTTAGGAT...............................................2011.001.00----------------------------------------1.00----------
..................................................................................................................TAAAGTAGAAAGATTTCCTTAAGTAAG.............................................................................................................2711.001.00-----------1.00---------------------------------------
.CGACAGTGCCTGGAACACAGTAAGC................................................................................................................................................................................................................................2511.001.00---------------------1.00-----------------------------
...............................................................................................CCTCATTATTTTGTTTCC.........................................................................................................................................1820.500.50--------------0.50------------------------------------
........................................................................................................................................................................................................................CTCAAAGCAGATGACT..................1660.170.17-------------------------------------------------0.17-
..................................................................................................................................................................................................TTTTAGGATTACAGAT........................................1690.110.11--------------------------------------------------0.11

Antisense strand
GCGACAGTGCCTGGAACACAGTAAGCATGGCAGCTCACAGCTTACCAAGCACAAATTTAGTACGGTGGAGAAGCAGTTGTCTTTAGAACACTGTGCCTCATTATTTTGTTTCCCTAAAGTAGAAAGATTTCCTTAAGTAAGACATAAGGCAAATATTCAAAATTTCTCATAAACATAAATTTTTGCAAAATGATTTTTAGGATTACAGATGCTTTCCTCAAAGCAGATGACTACATAGAGATTACAGGTG
....................................................((((((.((((((((.(((.((....)).)))....))))))))....((((((((......))))))))..))))))........................................................................................................................
..................................................51.................................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................TGAGGCACAGTGTTCTAAAG...................................................................................................................................................... 2011.001.00--1.00------------------------------------------------
....................................................................................AGAACACTGTGCCTCACTCG.................................................................................................................................................. 201.000.00--1.00------------------------------------------------
........................................................................................CACTGTGCCTCATTATCTA............................................................................................................................................... 191.000.00------------------1.00--------------------------------
.....................................................................................GAACACTGTGCCTCACATG.................................................................................................................................................. 191.000.00--1.00------------------------------------------------
...................................................................................TAGAACACTGTGCCTCACCG................................................................................................................................................... 201.000.00--1.00------------------------------------------------
...................................................................................TAGAACACTGTGCCTCACAAA.................................................................................................................................................. 211.000.00--1.00------------------------------------------------
......................................................................................................................................................AAATATTCAAAATTTCTAGC................................................................................ 201.000.00-----------------------------1.00---------------------