ID: uc002xdz.2_intron_8_0_chr20_34309800_r.5p
GENE: (5)
chr20:34312292-34312541-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
B-CELL
(2)
BRAIN
(6)
BREAST
(19)
CELL-LINE
(3)
HEART
(3)
HELA
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(5)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGTAATTTTTTTGTTGGTTAAGAGTTTGATTATTGGTGGTGTTGAAAGCCTCCTGTTGCATGGTATAGTGCTGTTGTGTTCTGTGACTGCTGCTCATTACGTTGAGTCGGATGTTTTCAGGACTTTTTTTTTTTTTTTAACTTTGCGTTTATTAACATTGATACAGTTTTCTCAAGACTGTCGTCCTGTCGTTTCTCCTTG
..........................................................................................................((((......))))......((((((.(((..(((((((......)))).)))..)))..))))))..............................................................................
...................................................................................................100........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
.........................................................................................................................................................AGTCGGATGTTTTCAGC................................................................................17148.008.00--23.0021.00-3.00------------------1.00--------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTCTCG......................................................2622.000.00----13.00-3.004.002.00------------------------------------
.........................................................................................................................................................AGTCGGATGTTTTCAG.................................................................................1618.008.00-----8.00---------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTGGC......................................................2618.001.005.003.00-------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTTG......................................................266.000.00-1.00--2.00-1.001.001.00------------------------------------
.........................................................................................................................................................AGTCGGATGTTTTCAGT................................................................................1714.008.00--1.001.00-1.00-------------------------------1.00-------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTCCTG......................................................254.000.00------4.00--------------------------------------
.........................................................................................................................................................AGTCGGATGTTTTCAGCA...............................................................................1813.008.00-----2.00---1.00-----------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTTTG.....................................................273.000.00----1.00-1.001.00-------------------------------------
........................................................................................................TTGCATGGTATAGTGCTGTTGTG...........................................................................................................................2313.003.00-----------3.00---------------------------------
.AACTGGCCAACGAGTTTTAGGCGTG................................................................................................................................................................................................................................2513.003.00----------2.00--------------------1.00-------------
.........................................................................................................................................................AGTCGGATGTTTTCAGTT...............................................................................1812.008.00---1.00------------------1.00----------------------
...........................................................................................................................TGTGTTCTGTGACTGCTGC............................................................................................................1912.002.00---------------2.00-----------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTTCAG.................................................................................2112.002.00------------1.00-------1.00------------------------
....................................................................................................................................TGACTGCTGCTCATTACGTTGAGTCGG...........................................................................................2712.002.002.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTGGCAC....................................................2812.001.00-2.00-------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTAAG.......................................................252.000.00--------2.00------------------------------------
.AACTGGCCAACGAGTTTTAGGC...................................................................................................................................................................................................................................2212.002.00------------------1.00------1.00-------------------
..................................................................................................................................................................TTTTCAGGACTTTTTTTTTTTTTTTC..............................................................262.000.002.00--------------------------------------------
......................................................................................................................................................................CAGGACTTTTTTTTTTTTTTTAAAAA..........................................................262.000.00-------------2.00-------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTTATTT................................................................................2212.001.00---------1.00-------1.00---------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTG.......................................................252.000.00-1.00------------1.00------------------------------
.................................................................................................................................................................................TTTTTTTTTTAACTTTGCTAG....................................................212.000.002.00--------------------------------------------
..................................................................................................................................................................TTTTCAGGACTTTTTTTTTTTTTCT...............................................................251.000.001.00--------------------------------------------
..................................................................................................................................................................................TTTTTTTTTAACTTTGCGTTTATTAACATTG.........................................3111.001.00----------------------------------------1.00----
....................................................................................................................................................CGTTGAGTCGGATGTTTT....................................................................................1811.001.00-----------------1.00---------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTATTCC..........................................................251.000.001.00--------------------------------------------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTCCAG......................................................251.000.00----1.00----------------------------------------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTTATC......................................................251.000.00--------1.00------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTCAG.......................................................251.000.00-------1.00-------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTG....................................................................................181.000.00------------1.00--------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTAAGCG..........................................................251.000.001.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACCTAG........................................................241.000.00-------1.00-------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTCCT.....................................................271.000.00------1.00--------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTGC......................................................261.000.00-1.00-------------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTAAGG.................................................................................211.000.00--------------------------------------1.00------
....................................................................................................................................................CGTTGAGTCGGATGTTTTCATCA...............................................................................231.000.00---------1.00-----------------------------------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTCATG......................................................251.000.00-------1.00-------------------------------------
......................................................................................................................................................TTGAGTCGGATGTTTGTG..................................................................................181.000.00-----------------------------1.00---------------
.....................................................................................................................................................................TCAGGACTTTTTTTTTTTTTTTGGC............................................................251.000.001.00--------------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTGCAA.................................................................................211.000.00---------1.00-----------------------------------
.....................................................................................................................................................................TCAGGACTTTTTTTTTTTTCTTT..............................................................231.000.00-1.00-------------------------------------------
.........................................................................................................................................................AGTCGGATGTTTTCAGA................................................................................1711.008.00-----1.00---------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTAAAG......................................................261.000.00------1.00--------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACCCG.........................................................231.000.00------1.00--------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTGAAA.................................................................................211.000.00------------1.00--------------------------------
.....................................................................................................................................................................TCAGGACTTTTTTTTTTTTTTCAG.............................................................241.000.001.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTCCCG......................................................261.000.00----1.00----------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTG........................................................2411.001.00-------1.00-------------------------------------
....................................................................................................................................................................TTCAGGACTTTTTTTTTTTTTTTTA.............................................................251.000.00--------1.00------------------------------------
...........................................................................................................................................TGCTCATTACGTTGAG...............................................................................................1611.001.00-1.00-------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACCGG.........................................................231.000.00------1.00--------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTGTG.......................................................251.000.00-1.00-------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTAGG.......................................................251.000.00-1.00-------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTATC............................................................231.000.001.00--------------------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTAACTTTGCGTTTAT.................................................2811.001.00-1.00-------------------------------------------
....................................................................................................................GTGCTGTTGTGTTCTGTGACTGCTGC............................................................................................................2611.001.00---------------------1.00-----------------------
..................................................GTAATTTTTTTGTTGGTTAAG...................................................................................................................................................................................2111.001.00-----------------------1.00---------------------
.............................................................................................................................TGTTCTGTGACTGCTGC............................................................................................................1711.001.00---------------------------------------1.00-----
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTAACTTTCC.......................................................281.000.001.00--------------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTAA...................................................................................191.000.00----------------------------------1.00----------
......................................................................................................................................................................CAGGACTTTTTTTTTTTTTTTCCCG...........................................................251.000.001.00--------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTACTT...........................................................241.000.001.00--------------------------------------------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTTGGC......................................................251.000.00-1.00-------------------------------------------
...................AGGCGTGCCAATCATAGTACAGGCATCA...........................................................................................................................................................................................................2811.001.00---------------------------------1.00-----------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACGGAC........................................................241.000.00-1.00-------------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTGCAG.................................................................................211.000.00---------1.00-----------------------------------
...............................................................TGGTTAAGAGTTTGATTATTGGTGG..................................................................................................................................................................2511.001.00----------1.00----------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTATG.....................................................271.000.00-------1.00-------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTGGCA.....................................................2711.001.00-1.00-------------------------------------------
...................................................................................................................................GTGACTGCTGCTCATTACGT...................................................................................................2011.001.00-------------------1.00-------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTACA..................................................................................201.000.00----------------1.00----------------------------
..........................................................................................................GCATGGTATAGTGCTGTTGTGTTC........................................................................................................................2411.001.00-----------------------------------1.00---------
....................................................................................................................................................CGTTGAGTCGGATGTTTGCA..................................................................................201.000.00------------------------------1.00--------------
................................................................................................................................................................TGTTTTCAGGACTTTTTTTTTTTTTTCT..............................................................281.000.00-1.00-------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTCCGC...........................................................241.000.001.00--------------------------------------------
................TTTAGGCGTGCCAATCATAGTT....................................................................................................................................................................................................................221.000.00------------------------------------1.00--------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTGG.......................................................2511.001.00-1.00-------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTCAAG..............................................................211.000.00-1.00-------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTAGGC......................................................261.000.001.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTTTCG.....................................................271.000.00--------1.00------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTAACTTTGCGTT....................................................3111.001.001.00--------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTAACGGAG........................................................271.000.001.00--------------------------------------------
................................................................................................................................................................TGTTTTCAGGACTTTTTTTTTTTTTAAC..............................................................281.000.001.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTATAG......................................................261.000.00-1.00-------------------------------------------
............................................................................................................................................................CGGATGTTTTCAGGACTTTTTTTTTTTTTCT...............................................................311.000.00-1.00-------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTCCGG...........................................................241.000.001.00--------------------------------------------
.........................................................................................................................................................................GACTTTTTTTTTTTTTTTAACTTTGTG......................................................271.000.00-1.00-------------------------------------------
....................................................................................................................................................................TTCAGGACTTTTTTTTTTTTTTTTCA............................................................261.000.00-1.00-------------------------------------------
.......................................................................................................................................................................AGGACTTTTTTTTTTTTTTTCTGG...........................................................241.000.001.00--------------------------------------------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTAACTTTGGAG.....................................................2711.001.00-1.00-------------------------------------------
....................................................................................................................................................CGTTGAGTCGGATGTTTGCGG.................................................................................211.000.00----------------------------1.00----------------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTAACTTTAGG......................................................251.000.00--------1.00------------------------------------
....TGGCCAACGAGTTTTAAC....................................................................................................................................................................................................................................181.000.00----------1.00----------------------------------
......................CGTGCCAATCATAGT.....................................................................................................................................................................................................................1520.500.50---------------------------0.50-----------------
.AACTGGCCAACGAGTTTTAG.....................................................................................................................................................................................................................................2020.500.50------------------0.50--------------------------
...........................CAATCATAGTACAGGCATC............................................................................................................................................................................................................1920.500.50---------------------------0.50-----------------
........................................................................................................................................................................................................................TTTCTCAAGACTGTCG..................1620.500.50------------------------------------------0.50--
.AACTGGCCAACGAGT..........................................................................................................................................................................................................................................1520.500.50-----------------------------------------0.50---
.................................TAGTACAGGCATCACAG........................................................................................................................................................................................................1720.500.50-------------------------------------------0.50-
...........................................................TTGTTGGTTAAGAGT................................................................................................................................................................................1570.140.14--------------------------------------------0.14
...................................................................................................................................................................TTTCAGGACTTTTTTTTTTTTTTT...............................................................2490.110.11-0.11-------------------------------------------
...................................................................................................................................................................TTTCAGGACTTTTTTTTTTTTTTTCAC............................................................2790.110.11-0.11-------------------------------------------

Antisense strand
TAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGTAATTTTTTTGTTGGTTAAGAGTTTGATTATTGGTGGTGTTGAAAGCCTCCTGTTGCATGGTATAGTGCTGTTGTGTTCTGTGACTGCTGCTCATTACGTTGAGTCGGATGTTTTCAGGACTTTTTTTTTTTTTTTAACTTTGCGTTTATTAACATTGATACAGTTTTCTCAAGACTGTCGTCCTGTCGTTTCTCCTTG
..........................................................................................................((((......))))......((((((.(((..(((((((......)))).)))..)))..))))))..............................................................................
...................................................................................................100........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
.........................................................................................................................................................AGTCGGATGTTTTCAG................................................................................. 161.000.00--------------1.00------------------------------
.........................................................................................................................................................................GACTTTTTTTTTTTTTTTAACGTGT........................................................ 251.000.00--------------------------------1.00------------
........................................................................................................................................................................................TTTAACTTTGCGTTTTGG................................................ 181.000.00----------------1.00----------------------------
..........................................................................................................................................................................................TAACTTTGCGTTTATTAGA............................................. 191.000.00--------------------------1.00------------------