ID: uc002xdi.2_intron_14_0_chr20_34220846_r.3p
GENE: (2)
chr20:34220796-34221045-


(3)
AGO2.ip 		(1)
AGO3.ip 		(11)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(16)
CELL-LINE 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(13)
SKIN 		(1)
XRN.ip

Sense strand
CCATCTTCTGTGCCAGTGAGCTCACCTAGGGGTGGAGGGGTTTGGAGGCTATGAGGCCTTCTCTTCCTTGGGTGTCACGGGGGTGGACGTATGCTCAGCCCTGCCTGGGTGATGCCTGCTGGCCTTCCCAAGCTGGGACCTGTAGTCGGGGAAGGGGAGAGAAGGCTCCCTGGTGCTTGACCCAGCTCCTTTTCCCTCAGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCCTGTGACCATCT
............................................................(((((((((((.((.((.(((((((......)))))..(((.((.((((....(((....)))...)))).)).))).)))))).)))))))))))..............................................................................................
...........................................................60...............................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGAT.................................................................................................24113.009.00-4.003.001.002.00----1.00-------------------------1.00-----1.00-------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGA..................................................................................................2319.009.00-----2.00----2.00---1.00------1.00----1.00---1.00-----1.00------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGG....................................................................................................2117.007.00------1.00-2.00---1.00------------------------1.00-----1.00---1.00-
.................................................................................................................................AAGCTGGGACCTGTAGTCGG.....................................................................................................2015.005.004.00-----------------------1.00------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGG...................................................................................................2212.002.00---------------------------1.00-----------------1.00---
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGA...................................................................................................2212.007.00------------1.00------------1.00-----------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGT..................................................................................................2312.002.00----------------------------1.00-------------1.00------
............................................................................................................................................TGTAGTCGGGGAAGGGGAGAGAAGGC....................................................................................2612.002.00-----------------------1.00---------------1.00---------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGAAA................................................................................................2512.001.00----------------2.00--------------------------------
................................................................TCCTTGGGTGTCACGGGGG.......................................................................................................................................................................1912.002.00-----------------1.00-----------1.00-------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGAA.................................................................................................2411.001.00--------------------------------1.00----------------
......................................................................................................................................GGGACCTGTAGTCGGGG...................................................................................................1711.001.00-------------------1.00-----------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGA....................................................................................................2111.005.00-------1.00-----------------------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGAT..................................................................................................2311.007.00----------------------1.00--------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGAATT...............................................................................................2611.001.00----------------------------------------1.00--------
............................................................................................................................................................................................................CCCACTGCGTGACCTTGGTTCAGCTGTCC.................2911.001.00-----------1.00-------------------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGATA................................................................................................2511.009.00---------1.00---------------------------------------
.................................................................CCTTGGGTGTCACGGGGG.......................................................................................................................................................................1811.001.00---------------1.00---------------------------------
.............................................................TCTTCCTTGGGTGTCACGGGGG.......................................................................................................................................................................2211.001.00---------------1.00---------------------------------
..............AGTGAGCTCACCTAGGGGTGGAGGGGT.................................................................................................................................................................................................................2711.001.00-----------1.00-------------------------------------
...........................................................................................................................................................................................CCTTTTCCCTCAGATAGTC............................................191.000.00----------------------------------------------1.00--
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGAAT................................................................................................2511.001.00--------------------------------------------1.00----
.................................................................................................................................AAGCTGGGACCTGTAGT........................................................................................................1711.001.00------------------1.00------------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGATTT...............................................................................................2611.009.00---1.00---------------------------------------------
..............AGTGAGCTCACCTAGGGGTGGAGGGGTCTGG.............................................................................................................................................................................................................3111.001.00---------------------------------1.00---------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGAAA.................................................................................................2411.007.00--------------1.00----------------------------------
..................................................................................................................................AGCTGGGACCTGTAGTCGGGGAT.................................................................................................231.000.00------1.00------------------------------------------
................................................................................................................................CAAGCTGGGACCTGTAGTCGGGG...................................................................................................2311.001.00--------------------------------------1.00----------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGGATG................................................................................................2511.009.00-------------------------------1.00-----------------
............................................................................................................................TTCCCAAGCTGGGACCT.............................................................................................................1711.001.00--------------------1.00----------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGT....................................................................................................2111.005.00---1.00---------------------------------------------
.................................................................................................................................AAGCTGGGACCTGTAGTCGGGT...................................................................................................2211.007.00-------------1.00-----------------------------------
.....................................................................................................................................TGGGACCTGTAGTCGGGGAAGGGGAGAGAAGGC....................................................................................3311.001.00----------------------------------1.00--------------

Antisense strand
CCATCTTCTGTGCCAGTGAGCTCACCTAGGGGTGGAGGGGTTTGGAGGCTATGAGGCCTTCTCTTCCTTGGGTGTCACGGGGGTGGACGTATGCTCAGCCCTGCCTGGGTGATGCCTGCTGGCCTTCCCAAGCTGGGACCTGTAGTCGGGGAAGGGGAGAGAAGGCTCCCTGGTGCTTGACCCAGCTCCTTTTCCCTCAGATGGCCCACTGCGTGACCTTGGTTCAGCTGTCCATTTCCTGTGACCATCT
............................................................(((((((((((.((.((.(((((((......)))))..(((.((.((((....(((....)))...)))).)).))).)))))).)))))))))))..............................................................................................
...........................................................60...............................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormGSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................CTGGGTGATGCCTGCAGG................................................................................................................................ 181.000.00-------1.00-----------------------------------------
...............................................................................................................................................................................................................................AGGAAATGGACAGCTGA.......... 1711.001.00-------------1.00-----------------------------------
.............................................................................................................................................................................................GCCATCTGAGGGAAAA............................................. 1660.170.17------------------------------------------------0.17
.......................................................CCAAGGAAGAGAAGGC................................................................................................................................................................................... 1690.110.11-----------------0.11-------------------------------