ID: uc002xcg.2_intron_8_0_chr20_33997271_r.3p
GENE: (1)
chr20:33997221-33997470-


(1)
AGO1.ip 		(1)
AGO2.ip 		(12)
CELL-LINE 		(1)
CERVIX 		(1)
KIDNEY 		(2)
LIVER 		(3)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
AGCCTGGACATTTGATCAGTGGAACTGGACATGCTTATGGTTTTTATGAGTTGTCCTGGGCATTGCTGATCATTTCTGCTTTTCTTTGGAAATAGTAAAAATTGCAGAAAGCCACCCTGTACTTTAGAAAATTAAAAAAAAGTTGTGGTAAAATACATGTAACAAAATTTACCTTTTAAACTTTTTTTTTTTTTTCTGAGACGGAGTTTTGCTCTTGTTGCGCAAGCTGGAGTGCAATGGCGTGATCTTG
......................................................................................................(((((.........)))))..((((((((..(((((((((((..((((((...............)))))).....)))))))))))..))))))))...................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCAAG.................................................2229.000.00--13.006.009.00-1.00--------------
.................................................................................................................................................................................AAACTTTTTTTTTTTTTTCACAG..................................................234.000.00--1.00-2.00--1.00-------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTTTTTATTG.....................................................264.000.00--1.003.00-----------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCTGG.................................................224.000.001.003.00-------------------
..........TTTGATCAGTGGAACTGGACATGCTTATGG..................................................................................................................................................................................................................3013.003.003.00--------------------
..............................................................................................................................................................................TTTAAACTTTTTTTTTTTTTTAATG...................................................253.000.00--1.002.00-----------------
.............................................................................................................................................................................................................GTTTTGCTCTTGTTGAAAA..........................193.000.00---------3.00-----------
.....GGACATTTGATCAGTGGAACTGGACA...........................................................................................................................................................................................................................2613.003.00--------3.00------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTTATTG........................................................233.000.00--1.00-1.00-1.00--------------
............................................................................................................................................................................CTTTTAAACTTTTTTTTTTTTTTAG.....................................................252.000.00---2.00-----------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTTTTG.........................................................222.000.00----1.00-1.00--------------
..........................................................................................................................................................................................TTTTTTTTTCTGAGACGGAGTTTGC.......................................252.000.002.00--------------------
...............................................................................................................................................................................TTAAACTTTTTTTTTTTTTTCTAAG..................................................252.000.00-------2.00-------------
................................................................................................................................................................................TAAACTTTTTTTTTTTTTTCTAG...................................................232.000.00--1.00-1.00----------------
.............................................................................................................................................................................TTTTAAACTTTTTTTTTTTCGTT......................................................232.000.00-2.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCGAG.................................................222.000.00-2.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGTCGG..............................................252.000.001.001.00-------------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTTTTTTATTG....................................................272.000.00---2.00-----------------
.............................................................................................................................................................................TTTTAAACTTTTTTTTTTTTTCAG.....................................................241.000.00------1.00--------------
.................................................................................................................................................................................AAACTTTTTTTTTTTTTTCTGGTA.................................................241.000.00-1.00-------------------
..........................................................................................................................................................................................TTTTTTTTTCTGAGACGGAGTGCGG.......................................251.000.001.00--------------------
..................................................................................................................................................................................................TCTGAGACGGAGTTTTACAG....................................201.000.001.00--------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGGCGT................................................241.000.00-1.00-------------------
.................................................................................................................................................................................AAACTTTTTTTTTTTTTTCTGAGC.................................................241.000.00-1.00-------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGACGGGGCC..........................................271.000.00-1.00-------------------
......................................................................................................TGCAGAAAGCCACCCTGTCAG...............................................................................................................................211.000.00-----------1.00---------
............................................................................................................................................................................................TTTTTTTCTGAGACGGAGGT..........................................201.000.001.00--------------------
....................................................................................................................................................................................CTTTTTTTTTTTTTTCTGAGAGCGG.............................................251.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGACGGAGTCC.........................................301.000.001.00--------------------
...........................................................GCATTGCTGATCATTGGTA............................................................................................................................................................................191.000.00----------1.00----------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGACGGAGGAC.........................................281.000.001.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGACTGAC............................................251.000.001.00--------------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTATTG.........................................................221.000.00---1.00-----------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCAGG.................................................221.000.00-1.00-------------------
......................................................................................................................................................................................TTTTTTTTTTTTTCTGAGACGGGGCC..........................................261.000.001.00--------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGGGC.................................................231.000.00-1.00-------------------
............................................................................................................................................................................................TTTTTTTCTGAGACGGCGTG..........................................201.000.001.00--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGCTGG................................................231.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCCGG.................................................221.000.00-1.00-------------------
........................................................................................................................................................................................TTTTTTTTTTTCTGAGACGGAGTTAG........................................261.000.001.00--------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTCTGG.................................................231.000.001.00--------------------
..........................................................................................................................................................................................TTTTTTTTTCTGAGACGGAGTTTTGCTT....................................281.000.001.00--------------------
........................................................................................................................................................................................TTTTTTTTTTTCTGAGACGGAGTTTTGCCCT...................................311.000.001.00--------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGCTGT................................................241.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGGGTG................................................231.000.001.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGACGGAGTTTTGCCC....................................331.000.001.00--------------------
.........................................................................................................................................................................................TTTTTTTTTTCTGAGACGGAGTTTTACAG....................................291.000.00-------1.00-------------
...........................................................................................................................................................................CCTTTTAAACTTTTTTTTTTTATTG......................................................251.000.00---1.00-----------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGACTGAG............................................271.000.001.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGACGGAGCCCC........................................291.000.001.00--------------------
........................................................................................................................................................................................TTTTTTTTTTTCTGAGACGGAGGCGG........................................261.000.001.00--------------------
................................................AGTTGTCCTGGGCATTGCT.......................................................................................................................................................................................1911.001.00----------1.00----------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCTGAGAGGCC.............................................241.000.001.00--------------------
....................................................................................................................................................................................................TGAGACGGAGTTTTGCTCTTGTACCC............................261.000.001.00--------------------
..........................................................................................................................................................................................TTTTTTTTTCTGAGACGGAGATC.........................................231.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGATGG................................................231.000.001.00--------------------
.............................................................................................................................................................................................TTTTTTCTGAGACGGAGTTTGCTC.....................................241.000.00-1.00-------------------
............................................................................................................................................................................................TTTTTTTCTGAGACGGAGTGCT........................................221.000.00-1.00-------------------
......................................................................................................................................................................................TTTTTTTTTTTTTCTGAGACGGAGCA..........................................261.000.00-1.00-------------------
.............................................................................................................................................................................................TTTTTTCTGAGACGGAGTTTTGCCC....................................251.000.001.00--------------------
............................................................................................................................................................................................TTTTTTTCTGAGACGGAGGGC.........................................211.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGACGGAGTTC.........................................301.000.00-1.00-------------------
........................................................................................................................................................................................TTTTTTTTTTTCTGAGACGGAGTTTTGCTTT...................................311.000.001.00--------------------
....................................................................................................................................................................................................TGAGACGGAGTTTTGCTCTTGTAAA.............................251.000.00---------------1.00-----
.........................................................GGGCATTGCTGATCAATG...............................................................................................................................................................................181.000.00--------------1.00------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGGTGG................................................231.000.00----------------1.00----
......................................................................................................................................................................................TTTTTTTTTTTTTCTGAGACGGAGTTGCTC......................................301.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCCG..................................................211.000.00----1.00----------------
..................................................................................................................................................................................................TCTGAGACGGAGTTTTGCCTTG..................................221.000.00-1.00-------------------
...............................................................................................................................................................................TTAAACTTTTTTTTTTTATG.......................................................201.000.00---1.00-----------------
...........................................................................................................................................................................................................................................AATGGCGTGATCTTGTTT181.000.00------------------1.00--
...........................................................................................................................................................................................TTTTTTTTCTGAGACGGAGTTTTGCCC....................................271.000.001.00--------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGACGG................................................241.000.001.00--------------------
..............................................................................................................................................................................TTTAAACTTTTTTTTTTTTCATT.....................................................231.000.00-------1.00-------------
.................................................................................................................................................................................AAACTTTTTTTTTTTTTTCTTGCC.................................................241.000.00-1.00-------------------
...........................................................................................................................................................................................TTTTTTTTCTGAGACGGAGTTTTGCC.....................................261.000.001.00--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGGCGG..............................................251.000.001.00--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCTTC.................................................221.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGGTAG................................................231.000.00-1.00-------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGAAGAG...............................................251.000.001.00--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGGAGG..............................................251.000.00-1.00-------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAAAC................................................231.000.00-1.00-------------------
.........................................................................................................................................................................................TTTTTTTTTTCTGAGACGGAGTTTTTGC.....................................281.000.001.00--------------------
..........................................................................................................................................................................ACCTTTTAAACTTTTATTG.............................................................191.000.00------1.00--------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTACG..................................................221.000.00----1.00----------------
..............................................................................................................................................................................TTTAAACTTTTTTTTTTTTTGTTT....................................................241.000.00-------1.00-------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTCAAT.................................................221.000.00---1.00-----------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGGCG.................................................221.000.001.00--------------------
.......................................................................................................................................................................TTTACCTTTTAAACTTTTTTTTTTTG.........................................................261.000.00------1.00--------------
........................................................................................................................................................................................TTTTTTTTTTTCTGAGACGGAGTTTTGG......................................281.000.00-1.00-------------------
...........................................................................................................................................................................................TTTTTTTTCTGAGACGGAGTTGCTC......................................251.000.001.00--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGCAGA................................................231.000.001.00--------------------
..............................................................................................................................................................................................TTTTTCTGAGACGGAGTTTTGG......................................221.000.001.00--------------------
......................................................................................................................................................................................TTTTTTTTTTTTTCTGAGACGGAGCCC.........................................271.000.001.00--------------------
............................................................................................................................................................................................TTTTTTTCTGAGACGGAGTGC.........................................211.000.00-1.00-------------------
..................................................................................................................................................................................................................GCTCTTGTTGCGCAATCGG.....................191.000.00------------1.00--------
...................TGGAACTGGACATGCTTATG...................................................................................................................................................................................................................2011.001.00-----------------1.00---
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGAGACGG..............................................2680.380.38-0.38-------------------
..............................................................................................................................................................................TTTAAACTTTTTTTTTTTTTTCTTTT..................................................2630.330.33-------0.33-------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGAGACGGAG............................................2860.330.33-0.33-------------------
..............................................................................................................................................................................TTTAAACTTTTTTTTTTTTTTCT.....................................................2330.330.33-------0.33-------------
........................................................TGGGCATTGCTGATC...................................................................................................................................................................................1540.250.25-------------------0.25-
.................................................................................................................................................................................AAACTTTTTTTTTTTTTTCTGAGACGG..............................................2740.250.250.25--------------------
...................................................................................................................................................................................ACTTTTTTTTTTTTTTCTGAGACGGAGTTT.........................................3050.200.20-0.20-------------------
..................................................................................................................................................................................AACTTTTTTTTTTTTTTCTGAGACG...............................................2590.110.11-0.11-------------------
..............................................TGAGTTGTCCTGGGC.............................................................................................................................................................................................1590.110.11--------------------0.11

Antisense strand
AGCCTGGACATTTGATCAGTGGAACTGGACATGCTTATGGTTTTTATGAGTTGTCCTGGGCATTGCTGATCATTTCTGCTTTTCTTTGGAAATAGTAAAAATTGCAGAAAGCCACCCTGTACTTTAGAAAATTAAAAAAAAGTTGTGGTAAAATACATGTAACAAAATTTACCTTTTAAACTTTTTTTTTTTTTTCTGAGACGGAGTTTTGCTCTTGTTGCGCAAGCTGGAGTGCAATGGCGTGATCTTG
......................................................................................................(((((.........)))))..((((((((..(((((((((((..((((((...............)))))).....)))))))))))..))))))))...................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
..............................................................................................................................................................................................................................CAAGCTGGAGTGCAATGCC......... 1910.000.00-----10.00---------------
.............................................................................................................................AGAAAATTAAAAAAAAGTTG......................................................................................................... 206.000.00--3.003.00-----------------
..............................................................................................................................................................................................................................CAAGCTGGAGTGCAATTC.......... 184.000.00-----4.00---------------
..............................................................................................................................GAAAATTAAAAAAAAGTG.......................................................................................................... 182.000.00----1.00-1.00--------------
.............................................................................................................................AGAAAATTAAAAAAAAGTG.......................................................................................................... 192.000.00---1.00--1.00--------------
.................................................................................................................................AATTAAAAAAAAGTTGTAG...................................................................................................... 192.000.00--1.00-1.00----------------
..................................................................................................................................ATTAAAAAAAAGTTGTATG..................................................................................................... 192.000.00--2.00------------------
.......................................................CTGGGCATTGCTGATAACG................................................................................................................................................................................ 191.000.00-------------1.00-------
..............ATCAGTGGAACTGGAGTG.......................................................................................................................................................................................................................... 181.000.001.00--------------------
.........................................................................................................................................AAAAGTTGTGGTAAACTGC.............................................................................................. 191.000.00-------1.00-------------
............................................................................................................................................................................................................................CGCAAGCTGGAGTGCAATC........... 191.000.00-----1.00---------------
................................................................................................................................AAATTAAAAAAAAGTTCAAG...................................................................................................... 201.000.00--1.00------------------
.....................................................................................TTGGAAATAGTAAAAATG................................................................................................................................................... 181.000.00------1.00--------------
..............................................................................................................................................................................................................................CAAGCTGGAGTGCAATGGC......... 191.000.00-----1.00---------------
............................................................................................................................TAGAAAATTAAAAAAAAGTG.......................................................................................................... 201.000.00--1.00------------------
.............................................................................................................................AGAAAATTAAAAAAAAGTC.......................................................................................................... 191.000.00-1.00-------------------
...........................................................................................................................................................................................................................TTGCACTCCAGCTTGCGC............. 1870.290.29-----0.29---------------
..........................................................................................................................................................................................................................ATTGCACTCCAGCTTGCGCA............ 2070.290.29----------0.29----------
...............................................................................................................................ACAACTTTTTTTTAATTTT........................................................................................................ 1950.200.20---0.20-----------------