ID: uc002xbv.0
GENE: EIF6(5)
chr20:33866960-33867418-


(1)
AGO2.ip 		(7)
B-CELL 		(2)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCCCAGCCTAGCACCATTGCCACCAGCATGCGGGATTCCCTCATTGACAGGTACCTGGGGCCTCTCCTTTCTTCTGCTCAGGGTTGGGGGTTAACTTGCATTTTGAGAGTATGGGGAAAAGATGTCATCTAGAATGGGAGCCTACCAGTTTGTTCTGGTAGCTTCTCGAGTGTGAGAGCATATCTGTACACTGCTGAGCAGATAAGAGCCAGCATATTCAAAAAATATTTCTTGAGCATCTGCTAATCCTCATCTTTGTGGTTTTTCAGGGCTAGGATACTAGAGCAGTAGCTGCTTGAGCAGCTTGTCAGAGCTGGTCCCGGGATGAGGGCTGAGGCAGGCACCTCACTTGAGAGTGAGGTGGGCTCTGTGAAACAGCTACTGACCGTGCGCTTTCCTTTCTCTTCAGCCTCACCTGAGTCACCTTCCAAGTTGTTCCATGGGCTCCTGGCTCTGGAC
.........................................................................................................................................................................................................................................................................................................................((((....((((.(((.((...(((((.(((((((((....)))))))))....(((.....)))...))).))..)).)))))))......))))..................................................
.......................................................................................................................................................................................................................................................................................................................312..............................................................................................409................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAGG..........................................................................................................................21113.0013.002.00-4.00---------1.00-----1.00-1.00--1.00----------------1.00---1.00-1.00---------
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAGGC.........................................................................................................................22112.0012.006.00-1.00-3.00------------------------------1.00------1.00-------------
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAGGCA........................................................................................................................23110.0010.00-----2.00--1.00-----2.001.00---1.00-----------1.00------1.00----------1.00------
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAGGCAA.......................................................................................................................2417.0010.00-----1.00-3.00----1.001.00---------------------------------1.00--------
..................................................................................................................................................................................................................................................................................................................................................................................................CGTGCGCTTTCCTTTCTCTTCAGT.................................................2416.002.00-6.00------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAGGCAG.......................................................................................................................2416.006.00----1.001.00-------1.00----------------1.00-----1.00----------------1.00--
............................................................................................................................................................................................................................................................................................................................GTCCCGGGATGAGGGCTGAG...........................................................................................................................2012.002.00----------2.00---------------------------------------------
................................................................................................................................................................................................................................................................................................................................CGGGATGAGGGCTGAGGCAGGCAC...................................................................................................................2412.002.00--------2.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGAGAGTGAGGTGGGCTCTGTGT......................................................................................232.000.00-----------2.00--------------------------------------------
..............................CGGGATTCCCTCATTGACAGCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................242.000.00---------2.00----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................CGTGCGCTTTCCTTTCTCTTCAG..................................................2312.002.00---2.00----------------------------------------------------
.......CTAGCACCATTGCCATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------
................................................................................................................................CTAGAATGGGAGCCTACCAGTTT....................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------------------------------1.00----
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTTCCAAGTTGTTC.....................1911.001.00-------------------------------------------1.00------------
........................................................................................................................................................................................TGTACACTGCTGAGCAGATAAGA............................................................................................................................................................................................................................................................2311.001.00---------------------------------------------1.00----------
...........................ATGCGGGATTCCCTCATTGACAGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00--------------------------------1.00-----------------------
......................................................................CTTCTGCTCAGGGTTA.....................................................................................................................................................................................................................................................................................................................................................................................161.000.00-------------------------1.00------------------------------
...................................................................................................................................................................................................................................................................GGTTTTTCAGGGCTAGGATACTAGAGC.............................................................................................................................................................................2711.001.00--1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCATGGGCTCCTGG........2011.001.00----------------1.00---------------------------------------
...........................................................................................................................................................................................................................................................................AGGGCTAGGATACTAGAG..............................................................................................................................................................................1811.001.00----------------------------------1.00---------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTTTCCTTTCTCTTCAGT.................................................221.000.00-----------------------------------------1.00--------------
.............CCATTGCCACCAGCATGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------------------1.00----------------
.......CTAGCACCATTGCCATCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------------
......CCTAGCACCATTGCCACCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCATGGGCTC............1611.001.00-------------------------------------1.00------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTTCCAAGTTGTTCCATGGGCTCCTGGC.......3111.001.00----------------------------1.00---------------------------
.............................................................................................................................................................................................................................................................................................................................TCCCGGGATGAGGGCTGAGG..........................................................................................................................2011.001.00---------------1.00----------------------------------------
.....................ACCAGCATGCGGGATTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------------------------1.00---
............................................................................................................................................................................TGAGAGCATATCTGTTGG.............................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00-----
.....................ACCAGCATGCGGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001.00---------------------------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGTTCCATGGGCTC............1811.001.00-----------------1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTCCTGGCTCTGGAC1911.001.00-----------------------------1.00--------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCTCACCTGAGTCACCTTCCAAG...........................2611.001.00------------------------------------------------1.00-------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTTGTTCCATGGGCTC............2011.001.00------------------------1.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................ATGAGGGCTGAGGCAG.......................................................................................................................1650.200.20------------------------------------------------------0.20-

Antisense strand
GCCCAGCCTAGCACCATTGCCACCAGCATGCGGGATTCCCTCATTGACAGGTACCTGGGGCCTCTCCTTTCTTCTGCTCAGGGTTGGGGGTTAACTTGCATTTTGAGAGTATGGGGAAAAGATGTCATCTAGAATGGGAGCCTACCAGTTTGTTCTGGTAGCTTCTCGAGTGTGAGAGCATATCTGTACACTGCTGAGCAGATAAGAGCCAGCATATTCAAAAAATATTTCTTGAGCATCTGCTAATCCTCATCTTTGTGGTTTTTCAGGGCTAGGATACTAGAGCAGTAGCTGCTTGAGCAGCTTGTCAGAGCTGGTCCCGGGATGAGGGCTGAGGCAGGCACCTCACTTGAGAGTGAGGTGGGCTCTGTGAAACAGCTACTGACCGTGCGCTTTCCTTTCTCTTCAGCCTCACCTGAGTCACCTTCCAAGTTGTTCCATGGGCTCCTGGCTCTGGAC
.........................................................................................................................................................................................................................................................................................................................((((....((((.(((.((...(((((.(((((((((....)))))))))....(((.....)))...))).))..)).)))))))......))))..................................................
.......................................................................................................................................................................................................................................................................................................................312..............................................................................................409................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR038861(GSM458544)
MM466. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................................................................................................................................................................................GAGGTGGGCTCTGTGAACCG.................................................................................. 201.000.00---------------------1.00----------------------------------
...............................................................................................................................................................................................................TCAAGAAATATTTTTTGAATATGCTGGC................................................................................................................................................................................................................................ 2811.001.00------1.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACAACTTGGAAGGTGACTCAGG................... 2611.001.00------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................GCATCTGCTAATCCTCATA............................................................................................................................................................................................................. 191.000.00----------------------1.00---------------------------------
...............................................................................................................................................................................................................................AATATTTCTTGAGCAGATG......................................................................................................................................................................................................................... 191.000.00---------------------------------1.00----------------------
.....................................................................................................................................................................................ATCTGTACACTGCTGAGCCGC................................................................................................................................................................................................................................................................. 211.000.00---1.00----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGTGACTCAGGTGAGGCTGAA............................. 2611.001.00------1.00-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGGTGACTCAGGTGAGGCT............................ 2411.001.00------1.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................TGACTCAGGTGAGGC.................................... 1570.140.14-------------------------------------------------------0.14