ID: uc002xak.2_intron_9_0_chr20_33030109_f.3p
GENE: ITCH(10)
chr20:33032892-33033141+


(2)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
LIVER 		(3)
OTHER 		(4)
SKIN

Sense strand
AAGAACCTGACTAATGCATCTTATGAACTTTCAAGAAATAAATTTTTAGAAACATTTCTCTTAAGTTCACTTACAAACTATTTAAAAATACATAAAAGACTCCAGATAAATCAAAAGTAGTTTCTCAAGGTAAAATATTCTATCTGTTTCACAAGTATTTGTTGAATTAGCTTGTTTTTTTTTTTTTTTTTCTGATTTAGCTGGGAACGGCGGGTTGACAACATGGGACGTATTTATTATGTTGACCATT
...................................................................................(((((.....(((((((...((.(((.(((((((((.((.....(((((........))))).......)).))))).)))).))).)).))))))).....)))))............................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................................................................GGGACGTATTTATTAGA.........173.000.00-----------------1.001.00-1.00--
........................................................................ACAAACTATTTAAAAATCCAG.............................................................................................................................................................212.000.00--------2.00--------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGCG......................................................242.000.002.00----------------------
...........................................................................................................................................................................TTGTTTTTTTTTTTTTTTTTCTTGG......................................................252.000.002.00----------------------
................................................................................................................................................................................................................................GGGACGTATTTATTAG..........162.000.00------2.00----------------
....................................................................................................................................................................................................................GGTTGACAACATGGGACGTA..................2012.002.00----2.00------------------
......................................................................................................................................................................TTAGCTTGTTTTTTTTTTTTCTTC............................................................241.000.001.00----------------------
..............................................................................................................................................................................................................ACGGCGGGTTGACAACATGGGAT.....................231.000.00----------------1.00------
......................................................................................................................................................................TTAGCTTGTTTTTTTTTTTATA..............................................................221.000.00--1.00--------------------
...........................................................................................................................................................................TTGTTTTTTTTTTTTTTTTTCTTTGC.....................................................261.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCCGG.......................................................231.000.001.00----------------------
..........................................................................................................................................................................CTTGTTTTTTTTTTTTTTTTCTTG........................................................241.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTCGAG............................................................231.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTAC...........................................................231.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTGTT..........................................................251.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTCTC...........................................................241.000.00-1.00---------------------
............................................................................................................................................................................................................................ACATGGGACGTATTTATTATGTTG......2411.001.00-1.00---------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTCGT............................................................221.000.00----------1.00------------
.....................................................................................................................................................................ATTAGCTTGTTTTTTATGT..................................................................191.000.00-----1.00-----------------
...........................................................................................................................................................................TTGTTTTTTTTTTTTTTTTTCTAATT.....................................................261.000.00--1.00--------------------
................................................................................................................................................................................................................GGCGGGTTGACAACATGGGACG....................2211.001.00---------------------1.00-
.........................................................................................................................................................................GCTTGTTTTTTTTTTTTTTTTTGTTT.......................................................261.000.00--1.00--------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTTCTAC........................................................261.000.001.00----------------------
.........................................................................................................................................................................GCTTGTTTTTTTTTTTGAGG.............................................................201.000.00-1.00---------------------
....................................................................................................................................................................................TTTTTTTTTTTCTGATTTAGCCGGG.............................................251.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTTCGG.....................................................251.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTTTTGA........................................................271.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTCGG..........................................................241.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCCCTC......................................................241.000.00-1.00---------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTTCCTG........................................................261.000.001.00----------------------
..........................................................................................................................................................................CTTGTTTTTTTTTTTTTTTTTCTCGAT.....................................................271.000.00--1.00--------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTCTGATTAGG..................................................251.000.00-1.00---------------------
................................................................................................................................................................................................................................GGGACGTATTTATTAGATC.......191.000.00-----------1.00-----------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGTTAC....................................................261.000.00-1.00---------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTTCCCC........................................................261.000.001.00----------------------
...........................................................................................................................................................................TTGTTTTTTTTTTTTTTTTTCTTGGC.....................................................261.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTTTCTTTAG.....................................................291.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTTGGC.........................................................251.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTTTTA.....................................................251.000.001.00----------------------
..................................................................................................................................................................................TTTTTTTTTTTTTCTGATTTAG..................................................2221.001.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTCCTT..........................................................241.000.00-1.00---------------------
................................................................................................................................................................................................TGATTTAGCTGGGAAGAGC.......................................191.000.00------------1.00----------
.........................................................................................................................................................................GCTTGTTTTTTTTTTTTTTTTTCCA........................................................251.000.00--1.00--------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTTGGT.....................................................251.000.001.00----------------------
.........................................................................................................................................................................GCTTGTTTTTTTTTTTCGTT.............................................................201.000.00-------------------1.00---
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTCCT............................................................221.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTGGG..........................................................251.000.001.00----------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTTCTG.........................................................261.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGCAG.....................................................251.000.00-1.00---------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTCTTT.........................................................251.000.001.00----------------------
.................................................AAACATTTCTCTTAAGTTCACTTACA...............................................................................................................................................................................2611.001.00----------------------1.00
........................................................................................................................................................................AGCTTGTTTTTTTTTTTGG...............................................................191.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGTTG.....................................................251.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTTTGT.....................................................251.000.00-1.00---------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGCCCG....................................................261.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTAGTA.....................................................251.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTCCCC............................................................221.000.00-1.00---------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTGTCC.....................................................251.000.001.00----------------------
........................................................................................................................................................................AGCTTGTTTTTTTTTTTTTTTGTC..........................................................241.000.00-1.00---------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTATAG.....................................................251.000.00-1.00---------------------
...............................................................................................................................................................TGTTGAATTAGCTTGTTTAT.......................................................................201.000.00---------------1.00-------
.................................................................................................................................................................................TTTTTTTTTTTTTTCTGATTTGCCC................................................251.000.00-1.00---------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTAAGC.....................................................251.000.00-1.00---------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTTTGG.........................................................261.000.001.00----------------------
..................................................................................................................................................................................................................CGGGTTGACAACATGGGACGAA..................2211.001.00-------------1.00---------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTAC...........................................................241.000.00-1.00---------------------
........................................................................................................................................................................................................................GACAACATGGGACGTATTTA..............2011.001.00--------------1.00--------
.........................................................................................................................................................................GCTTGTTTTTTTTTTTTTTCG............................................................211.000.00--1.00--------------------
.......................................................................................................................................................................TAGCTTGTTTTTTTTTTTTTTTTTTTAC.......................................................281.000.001.00----------------------
............................................................................................................................................................................TGTTTTTTTTTTTTTTTTTCTTAGC.....................................................251.000.00-1.00---------------------
.........................................................................................................................................................................GCTTGTTTTTTTTTTTTTTTTTCAAAG......................................................271.000.00--1.00--------------------
..................................................................................................................................................................................................................CGGGTTGACAACATGGGACG....................2011.001.00----1.00------------------
..............................TCAAGAAATAAATTTTT...........................................................................................................................................................................................................1790.110.11--0.11--------------------

Antisense strand
AAGAACCTGACTAATGCATCTTATGAACTTTCAAGAAATAAATTTTTAGAAACATTTCTCTTAAGTTCACTTACAAACTATTTAAAAATACATAAAAGACTCCAGATAAATCAAAAGTAGTTTCTCAAGGTAAAATATTCTATCTGTTTCACAAGTATTTGTTGAATTAGCTTGTTTTTTTTTTTTTTTTTCTGATTTAGCTGGGAACGGCGGGTTGACAACATGGGACGTATTTATTATGTTGACCATT
...................................................................................(((((.....(((((((...((.(((.(((((((((.((.....(((((........))))).......)).))))).)))).))).)).))))))).....)))))............................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..........................................................................................................................TCTCAAGGTAAAATATTC.............................................................................................................. 186.000.00---6.00-------------------
.....................................................................................................................................................................ATTAGCTTGTTTTTTCTTC.................................................................. 191.000.00---------1.00-------------
..................................GAAATAAATTTTTAGAAACCAG.................................................................................................................................................................................................. 221.000.00-----1.00-----------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTCTGATGT.................................................... 241.000.00-------1.00---------------
...........................................................................................................................................................................TTGTTTTTTTTTTTTTTTTTCTGTGT..................................................... 261.000.00-------1.00---------------