ID: uc002xai.2_intron_0_0_chr20_32868972_r.3p
GENE: (9)
chr20:32868922-32869171-


(4)
B-CELL 		(8)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(4)
CERVIX 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
GCATGGTTCCCTTTTGAGGGGGGCTGGGCAGCCAAAACAACACATTAACTGAGGCTGGGTGTGAGGATAGAAAGAGTTAACATGAGTACCACACATGGCAGAAACCCTAACAGAACACTTCTGCCTCTATTGGCAGCCAGACGCGTGTAGGGGTCCCAGAAAATGGCACTGATTCCCGGTCTTCCTTTGTTTCTCCCCAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGCAAGCTGAATGTGAAGTT
.....................................................................................................................................................((((....(((((..((.((((.....))))...))....)))))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040037(GSM532922)
G243T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189786SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)
.............................................................................................................................................CGCGTGTAGGGGTCCAAA...........................................................................................18102.000.0080.005.006.005.004.00--------1.00------1.00----------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCAA...........................................................................................1811.000.002.009.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCAAC...........................................................................................1811.000.004.007.00-----------------------------------------
..........................................................................................................................................................CCCAGAAAATGGCACTCTCA............................................................................2011.000.00-----3.00-1.00---2.002.00-----------1.00-1.00---1.00------------
.............................................................................................................................................CGCGTGTAGGGGTCCGAA...........................................................................................1810.000.004.005.00--------------------------1.00--------------
.............................................................................................................................................CGCGTGTAGGGGTCCACA...........................................................................................189.000.001.007.00----------------1.00------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCTAA...........................................................................................185.000.004.00------------------------1.00-----------------
.............................................................................................................................................CGCGTGTAGGGGTCCAAT...........................................................................................184.000.002.002.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCAC...........................................................................................184.000.00-4.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCAGA...........................................................................................183.000.002.001.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCGCA...........................................................................................183.000.00-3.00-----------------------------------------
.....................................................................................................................................................................GCACTGATTCCCGGTCTTCCTTTGTT...........................................................2612.002.00------2.00------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCATA...........................................................................................182.000.001.001.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCGCT...........................................................................................182.000.00-2.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCAAG...........................................................................................182.000.002.00------------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCGAC...........................................................................................182.000.001.001.00-----------------------------------------
................................................................................................................................................................................................................................CACCTGGGCAAGCTGAATGTGAAGT.2511.001.00---------1.00---------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCATC...........................................................................................181.000.00-1.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCACAC..........................................................................................191.000.00-1.00-----------------------------------------
.......................................................................................................................................................GGTCCCAGAAAATGGGGAG................................................................................191.000.00---------------1.00---------------------------
............................................................................................................................................................................TTCCCGGTCTTCCTTTGTTTCTC.......................................................2311.001.00-----------------------------1.00-------------
.............................................................................................................................................CGCGTGTAGGGGTCCCCC...........................................................................................181.000.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................ACCTGGGCAAGCTGAATGTGAAG..2311.001.00-------------------1.00-----------------------
..............................................................................................................................................................................................TTCTCCCCAGCTGGACTAC.........................................191.000.00----------------1.00--------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCGA...........................................................................................181.000.001.00------------------------------------------
....................................................................................................................................................................................................................GTGGCTGAAGCCCACGTTC...................191.000.00--------1.00----------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCAAGC.........................................................................................201.000.001.00------------------------------------------
..........................................................................................................................................................CCCAGAAAATGGCACTCGCA............................................................................201.000.00---------------------1.00---------------------
................................................................................................................................................................................................................................CACCTGGGCAAGCTGAATGTGAAG..2411.001.00---------------------------1.00---------------
..........................................................................................................................................................CCCAGAAAATGGCACTATCA............................................................................201.000.00--------------1.00----------------------------
....................................................................................................................................................................................................................................TGGGCAAGCTGAATGTGAAGTT2211.001.00---------1.00---------------------------------
..............TGAGGGGGGCTGGGCAGTGGC.......................................................................................................................................................................................................................211.000.00----------1.00--------------------------------
...................................................................................................................................................................................................................................CTGGGCAAGCTGAATGTGAAG..2111.001.00-----------------------1.00-------------------
..........................................................................................................................................................CCCAGAAAATGGCACTCCCC............................................................................201.000.00-------1.00-----------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCTAC...........................................................................................181.000.00-1.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCTAT...........................................................................................181.000.00-1.00-----------------------------------------
..............................................AACTGAGGCTGGGTGGTA..........................................................................................................................................................................................181.000.00--------1.00----------------------------------
.................................................................................................................................................................................GGTCTTCCTTTGTTTAAT.......................................................181.000.00----------------------1.00--------------------
..............................................................................................................................................GCGTGTAGGGGTCCCAATCG........................................................................................201.000.001.00------------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCCA...........................................................................................181.000.00-1.00-----------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCCAAT..........................................................................................191.000.001.00------------------------------------------
.............................................................................................................................................CGCGTGTAGGGGTCCTTA...........................................................................................181.000.001.00------------------------------------------
...............GAGGGGGGCTGGGCAGTCG........................................................................................................................................................................................................................191.000.00-----------------1.00-------------------------
............................................................................................................................................ACGCGTGTAGGGGTCCCAA...........................................................................................191.000.001.00------------------------------------------
.................................................................................................................................................................................................................GCAGTGGCTGAAGCCCACCTGGG..................2320.500.50---------------------------------0.50---------
.........................................................................................................................................................................................................................TGAAGCCCACCTGGGCAAGCTGAAT........2520.500.50--------------------------------0.50----------
..............................................................................................................................................................................................................................CCCACCTGGGCAAGCTGAATGT......2220.500.50-------------------------------0.50-----------
...........................................................................................................................................................................................................................AAGCCCACCTGGGCAAGCTGAATGTGA....2720.500.50----------------------------------0.50--------
......................................................................................................................................................................................................AGCTGGATGAGGCAGTGGCTGAAGC...........................2530.330.33-------------------------------0.33-----------
..............................................................................................................................................................................................................................CCCACCTGGGCAAGCTGAA.........1930.330.33-----------------------------------0.33-------
...........................................................................................................................................................................................................................AAGCCCACCTGGGCAAGCTG...........2030.330.33------------------------------------0.33------
.......................................................................................................................................................................................................GCTGGATGAGGCAGTGGCTGAAGC...........................2430.330.33-------------------------------------0.33-----
..........................................................................................................................................................................................................GGATGAGGCAGTGGCTGAAG............................2040.250.25--------------------------------0.25----------
.....................................................................................................................................................................................................................TGGCTGAAGCCCACCTGGGCAAG..............2340.250.25--------------------------------------0.25----
..............................................................................................................................................................................................................GAGGCAGTGGCTGAAGC...........................1750.200.20-----------------------------------------0.20-
............................................................................................................................................................................................................ATGAGGCAGTGGCTGAAG............................1850.200.20----------------------------------------0.20--
.......................................................TGGGTGTGAGGATAG....................................................................................................................................................................................1550.200.20---------------------------------------0.20---
.........................................................................................................................................................................................................TGGATGAGGCAGTGGCT................................1760.170.17------------------------------------------0.17

Antisense strand
GCATGGTTCCCTTTTGAGGGGGGCTGGGCAGCCAAAACAACACATTAACTGAGGCTGGGTGTGAGGATAGAAAGAGTTAACATGAGTACCACACATGGCAGAAACCCTAACAGAACACTTCTGCCTCTATTGGCAGCCAGACGCGTGTAGGGGTCCCAGAAAATGGCACTGATTCCCGGTCTTCCTTTGTTTCTCCCCAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGCAAGCTGAATGTGAAGTT
.....................................................................................................................................................((((....(((((..((.((((.....))))...))....)))))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040037(GSM532922)
G243T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189786SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)
..................................................................................................................................................................................................................................CCTGGGCAAGCTGAAAAG...... 181.000.00----------1.00--------------------------------