ID: uc002wzu.3_intron_5_0_chr20_32268223_r.5p
GENE: (1)
chr20:32273610-32273859-


(4)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(5)
BREAST
(16)
CELL-LINE
(7)
CERVIX
(1)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
XRN.ip

Sense strand
CGCCCCGGCCCACACCCAGTGCGCCGCGGCCCGCGCTCGGCCGCCCGCCGGTACGGACCCCAGGGACGCCGCGCCGACAGCGCCGCCTGTGCCCCCCGCGCAGACCCGGGAGGGCGCCGTGTTTGGCCTGGAGGCGGCAGGGGGCGGGGGAGGGGTTGACTGAGGCGCCCAGGCTGGGCGGTGCAGAGCCGGGGTTGGGCCTCCGGGCCCCGCCCTGGGGTGCGGGGTGACCTCGGGCCGGTCCCTGTTT
.......................................................((((((.........((((.....))))..(((.(((((((........(((....))).(((((.(((.....))).))))).))))))).))).)))))).............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040027(GSM532912)
G220T. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040020(GSM532905)
G699N_2. (cervix)
.....................................................................................................................................GCGGCAGGGGGCGGGGGGGCC................................................................................................218.000.003.003.00-2.00---------------------------------------------
.....................................................................................................................................GCGGCAGGGGGCGGGGGGGG.................................................................................................208.000.004.001.00-2.001.00--------------------------------------------
.....................................................................................................................................GCGGCAGGGGGCGGGGGGGGC................................................................................................216.000.003.00--1.001.00--------------------1.00-----------------------
....................................................................................................................................GGCGGCAGGGGGCGGCGGC...................................................................................................196.000.00--6.00----------------------------------------------
....................................................................................................................................GGCGGCAGGGGGCGGGGGGG..................................................................................................204.000.00-3.00------------------------------------1.00----------
...........................................CCCGCCGGTACGGACCCCAGGGACGC.....................................................................................................................................................................................2612.002.00-----2.00-------------------------------------------
........................................................................................................................................GCAGGGGGCGGGGGAGGGCG..............................................................................................201.000.00-1.00-----------------------------------------------
..........................................................CCCAGGGACGCCGCGCC...............................................................................................................................................................................1711.001.00---------------1.00---------------------------------
.....................................................................................................................................................................................................GGCCTCCGGGCCCCGCGT...................................181.000.00---------------------------------1.00---------------
.......................................................................................................................................................................CCCAGGCTGGGCGGTTAAA................................................................191.000.00----------------1.00--------------------------------
........................................................................................................................................................GGGTTGACTGAGGCGCC.................................................................................1711.001.00----------------------------1.00--------------------
...................................................................................................................................AGGCGGCAGGGGGCGGGGGAGGGGTTG............................................................................................2711.001.00---------1.00---------------------------------------
................................................................................................................................................................TGAGGCGCCCAGGCTGGGCGGTGCAG................................................................2611.001.00----------1.00--------------------------------------
..............................................GCCGGTACGGACCCCAGGGACG......................................................................................................................................................................................2211.001.00------------1.00------------------------------------
.........................................CGCCCGCCGGTACGGACCCCAGGGACGC.....................................................................................................................................................................................2811.001.00------------------------------1.00------------------
.....................................................................................................................................GCGGCAGGGGGCGGGGGC...................................................................................................181.000.00------------------1.00------------------------------
...............................................................................................................................CTGGAGGCGGCAGGGCAC.........................................................................................................181.000.00-------------------------------------------1.00-----
...............................................CCGGTACGGACCCCAGGGACGCC....................................................................................................................................................................................2311.001.00-----------------------------------------1.00-------
....................................................................................................................................GGCGGCAGGGGGCGGGGGGGGG................................................................................................221.000.00------------------------------------------1.00------
...............................................................................................CCGCGCAGACCCGGGT...........................................................................................................................................161.000.00----------------------------------------1.00--------
..........CACACCCAGTGCGCCGCGGCCCGC........................................................................................................................................................................................................................2411.001.00--------------------------------1.00----------------
......................................................................................................................................................................GCCCAGGCTGGGCGGTGCTTGA..............................................................221.000.00--------------1.00----------------------------------
.......................................................................................................................................................................................................................TGGGGTGCGGGGTGACCTC................1911.001.00-----------------1.00-------------------------------
......................................................................................CTGTGCCCCCCGCGCGTC..................................................................................................................................................181.000.00----------------------------------1.00--------------
....................................................................................................................................GGCGGCAGGGGGCGGCGG....................................................................................................181.000.00--1.00----------------------------------------------
.....................................................................................................................................GCGGCAGGGGGCGGGGGGTC.................................................................................................201.000.00----------1.00--------------------------------------
......................................................................................................................................CGGCAGGGGGCGGGG.....................................................................................................1501.001.001.00------------------------------------------------
..............................................GCCGGTACGGACCCCAGGGACGCC....................................................................................................................................................................................2411.001.00------------------------------------1.00------------
....................................................................................................................................GGCGGCAGGGGGCGGCGGG...................................................................................................191.000.00--1.00----------------------------------------------
....................................................................................................................................GGCGGCAGGGGGCGGAGG....................................................................................................181.000.00---------------------------------------1.00---------
.............................................................................................................................................................................................CGGGGTTGGGCCTCCGGG...........................................1811.001.00--------1.00----------------------------------------
.....................................................................................................................................GCGGCAGGGGGCGGGG.....................................................................................................1601.001.00-1.00-----------------------------------------------
............................................................................................................................................................................................................................TGCGGGGTGACCTCGGGCCGGTCCCCTGC.291.000.00---------1.00---------------------------------------
......................................................................................................................................CGGCAGGGGGCGGGGGAGGGG...............................................................................................2130.330.33-0.33-----------------------------------------------
......................................................................................................................................................................................................................................CCTCGGGCCGGTCCCCC...1730.330.33--------------------------------------------0.33----
.....................................................................................................................................GCGGCAGGGGGCGGGGGAG..................................................................................................1930.330.33----------------------------------------------0.33--
......................................................................................................................................................................................................................................CCTCGGGCCGGTCCC.....1530.330.33---------------------------------------------0.33---
......................................................................................................................................................................................................................................CCTCGGGCCGGTCCCCCC..1830.330.33--------------------------------------------0.33----
.....................................................................................................................................................GAGGGGTTGACTGAG......................................................................................1580.250.25-----------------------------------------------0.25-
......................................................................................................................................CGGCAGGGGGCGGGGGAGG.................................................................................................1950.200.20------------------------------------------------0.20
.....................................................................................................................................................GAGGGGTTGACTGAGCGTA..................................................................................1980.120.25------------0.12------------------------------------

Antisense strand
CGCCCCGGCCCACACCCAGTGCGCCGCGGCCCGCGCTCGGCCGCCCGCCGGTACGGACCCCAGGGACGCCGCGCCGACAGCGCCGCCTGTGCCCCCCGCGCAGACCCGGGAGGGCGCCGTGTTTGGCCTGGAGGCGGCAGGGGGCGGGGGAGGGGTTGACTGAGGCGCCCAGGCTGGGCGGTGCAGAGCCGGGGTTGGGCCTCCGGGCCCCGCCCTGGGGTGCGGGGTGACCTCGGGCCGGTCCCTGTTT
.......................................................((((((.........((((.....))))..(((.(((((((........(((....))).(((((.(((.....))).))))).))))))).))).)))))).............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040027(GSM532912)
G220T. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040020(GSM532905)
G699N_2. (cervix)
.........................................................GTCGGCGCGGCGTCCCTGGGG............................................................................................................................................................................ 2112.002.00------2.00------------------------------------------
....................GCGCCGCGGCCCGCGCGG.................................................................................................................................................................................................................... 182.000.00-------------1.00-----1.00-----------------------------
.........................................................................CCGACAGCGCCGCCTGTGGG............................................................................................................................................................. 201.000.00-----------------------------1.00-------------------
............................................................................................CCCGGGTCTGCGCGGGGG............................................................................................................................................ 1811.001.00---------------------1.00---------------------------
.....................CGAGCGCGGGCCGCGGCG................................................................................................................................................................................................................... 1811.001.00--------------------------1.00----------------------
.....................................................................GCACAGGCGGCGCTGTCGGCGCG.............................................................................................................................................................. 2311.001.00-------------------------------------1.00-----------
.................................................................................................................................GGAGGCGGCAGGGGGCGGTGGG................................................................................................... 221.000.00-----------------------1.00-------------------------
.............................................................................................................................................................................................................GGCCCCGCCCTGGGGTTATC......................... 201.000.00-----------1.00-------------------------------------
....................GCGCCGCGGCCCGCGCGCGG.................................................................................................................................................................................................................. 201.000.00--------------------1.00----------------------------
........................................................................AGGCGGCGCTGTCGGC.................................................................................................................................................................. 1611.001.00-----------------------------------1.00-------------
....................GCGCCGCGGCCCGCGCCGGC.................................................................................................................................................................................................................. 201.000.00--1.00----------------------------------------------
......................................................................................CTGTGCCCCCCGCGCAGATC................................................................................................................................................ 201.000.00--------1.00----------------------------------------
...............................................................................................................................................................................................CCCGGAGGCCCAACCC........................................... 1611.001.00-------1.00-----------------------------------------
........................................................................................GTGCCCCCCGCGCAGGGGC............................................................................................................................................... 191.000.00----------------------1.00--------------------------
........................................................................................GTGCCCCCCGCGCAGGCGC............................................................................................................................................... 191.000.00----1.00--------------------------------------------
...........................................................................GACAGCGCCGCCTGTTTCG............................................................................................................................................................ 191.000.00-----1.00-------------------------------------------
...................................CTCGGCCGCCCGCCGGGGC.................................................................................................................................................................................................... 191.000.00------------------------1.00------------------------
.........................................................................................CCCGGGTCTGCGCGGGGGGCA............................................................................................................................................ 2111.001.00------1.00------------------------------------------
..................................................................................................................................................................................................TTGGGCCTCCGGGCCTGG...................................... 181.000.00---------------------------1.00---------------------
........................................................................CAGGCGGCGCTGTCGGC................................................................................................................................................................. 1711.001.00-------1.00-----------------------------------------
...................................CTCGGCCGCCCGCCGGG...................................................................................................................................................................................................... 171.000.00-------------------------------1.00-----------------
......................GCCGCGGCCCGCGCTCTGGT................................................................................................................................................................................................................ 201.000.00-----------1.00-------------------------------------