ID: uc002wwi.2_intron_0_0_chr20_30225766_f.5p
GENE: (1)
chr20:30225716-30225965+


(1)
AGO2.ip
(1)
B-CELL
(7)
BREAST
(6)
CELL-LINE
(8)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
OTHER
(25)
SKIN

Sense strand
GTTGCTCGCTGGGCAGACCCAGGTCGCGCTCCCACTGCCGAGCCCGCGAGGTGAGTGAGTTGGGGGAGGACCCCGCCACCCAAGCCCGCGCGGGTCAGGGGCGCGGCTCGGTCTCCTGCCTTCGCCGCTGGGTCACGCCCCAGTGGTCCCTGTCTTAGAGGGTTGGGGGGCTTCTTGTAGGTTAGAGTTGAAGACTCCTGGGGAGTCTGCATATGTGTGCCATCTCTTTCCCCAAATATAGATTACATCC
....................................................((((.....((((.....))))((..(((..((((....))))..)))..)).)))).............................................................................................................................................
..................................................51........................................................109...........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR189784SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................CGCGCGGGTCAGGGGG....................................................................................................................................................16227.5017.0010.004.003.00-2.50-0.501.000.50-0.50----1.00------1.00-------0.50--0.50------0.50--0.50-0.500.500.50---
......................................................................................CGCGCGGGTCAGGGG.....................................................................................................................................................15217.0017.008.000.501.50-0.50-2.001.000.50-0.50-----------------0.50---0.50-----0.500.50--------0.50--
......................................................................................CGCGCGGGTCAGGGGGCGG.................................................................................................................................................1925.5017.000.50--------0.50--1.00-1.00--------0.50--0.500.50---0.50------------0.50------
......................................................................................CGCGCGGGTCAGGGGGCG..................................................................................................................................................1824.5017.001.50-0.50------0.50-------------0.50-----0.50-------0.50----0.50--------
......................................................................................CGCGCGGGTCAGGGGGC...................................................................................................................................................1723.5017.00--------1.00--------1.00----------------0.500.50-----0.50---------
.TTGCTCGCTGGGCAGACCCAG....................................................................................................................................................................................................................................2111.001.00-------------1.00-------------------------------------
......................................................................................................................................................................................................TGGGGAGTCTGCATATTC..................................181.000.00-----------1.00---------------------------------------
......CGCTGGGCAGACCCAGGTCGCG..............................................................................................................................................................................................................................2211.001.00------------------------1.00--------------------------
.........TGGGCAGACCCAGGTGAG...............................................................................................................................................................................................................................181.000.00---1.00-----------------------------------------------
......................................................GTGAGTTGGGGGAGGACGC.................................................................................................................................................................................191.000.00-------------------1.00-------------------------------
............................CTCCCACTGCCGAGCCTT............................................................................................................................................................................................................181.000.00--------------------1.00------------------------------
......................................................................................CGCGCGGGTCAGGGGGG...................................................................................................................................................1721.0017.00--0.50------0.50-----------------------------------------
.............................................................GGGGGAGGACCCCGCCCCCG.........................................................................................................................................................................201.000.00-----1.00---------------------------------------------
...........................................................................................................TCGGTCTCCTGCCTTACTC............................................................................................................................191.000.00---------------------1.00-----------------------------
.....................................................................................CCGCGCGGGTCAGGGGG....................................................................................................................................................171.000.00-1.00-------------------------------------------------
......................................................................................CGCGCGGGTCAGGGGGTG..................................................................................................................................................1820.5017.00------------------------------------0.50--------------
......................................................GTGAGTTGGGGGAGGA....................................................................................................................................................................................1680.120.12--------------------------------------------------0.12

Antisense strand
GTTGCTCGCTGGGCAGACCCAGGTCGCGCTCCCACTGCCGAGCCCGCGAGGTGAGTGAGTTGGGGGAGGACCCCGCCACCCAAGCCCGCGCGGGTCAGGGGCGCGGCTCGGTCTCCTGCCTTCGCCGCTGGGTCACGCCCCAGTGGTCCCTGTCTTAGAGGGTTGGGGGGCTTCTTGTAGGTTAGAGTTGAAGACTCCTGGGGAGTCTGCATATGTGTGCCATCTCTTTCCCCAAATATAGATTACATCC
....................................................((((.....((((.....))))((..(((..((((....))))..)))..)).)))).............................................................................................................................................
..................................................51........................................................109...........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR189784SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................CCACCCAAGCCCGCGA............................................................................................................................................................... 161.000.00-----1.00---------------------------------------------
.......................................................................................................................................................................................................................TGTGCCATCTCTTTCGGA................. 181.000.00-------------------------1.00-------------------------
.........................................................................................................................................................................................................GGAGTCTGCATATGTTGC............................... 181.000.00------------------1.00--------------------------------
............................................................................GCGCGGGCTTGGGTG............................................................................................................................................................... 1511.001.00----------------1.00----------------------------------
.........................................................................................................................................................................................................GGAGTCTGCATATGTGGCT.............................. 191.000.00---1.00-----------------------------------------------
........................................................................................CGCGGGTCAGGGGCGCGGGC.............................................................................................................................................. 201.000.00-----1.00---------------------------------------------
................................................................................................................................................................GGTTGGGGGGCTTCTTTTC....................................................................... 191.000.00---1.00-----------------------------------------------
.......................................................................CGGGCTTGGGTGGCGGG.................................................................................................................................................................. 1730.330.33-------------------------------------------------0.33-