| (3) B-CELL | (1) BREAST | (8) CELL-LINE | (1) CERVIX | (1) HELA | (2) LIVER | (5) SKIN | (1) TESTES |
| GGAAGCAACACTGCCAACACTTTGATTTTGGACTTCTGACCTCCAGAACTGTGAGAGAAAATAATTTTTATTACTTTAAGCCACTCAGTTTGTTATGGCAAGTGTACTTTATTTATTTATTTTCTTTCAGATAATAAATTTATTATTGTATTATTTCTATTAAAAATAATGTAGTAAACAATTAGTCATAGGGAAAAACTTGTAGGAGGTACCAAGTTTCATCTCATGAAATTTAGTATGAAACTCAGAAATCAAGATAACAGGATACAGACCAGAGATATTCACTCTCAGGAATTTACCCTGCAGAAAGAGGAACTAATGTTTTATAAATTTATGTAACTCACCAATTATCTACAATATTTCCTCGTGGAAATGTATTCATTTTCTACAGCCAAAATCAAAGGAGATTTTCCCTATTATTTTCCTCTGTAGCATTCTAAAAGCTGAGCCTTGGAATTCTGTTTGAAATCACCTACAGAAAA ..........................................................................................................((((((..(((((((.((.....)).)))))))...((((((((((((((.......))))))))))))))..........))))))................................................................................................................................................................................................................................................................................................. ....................................................................................................101...........................................................................................195............................................................................................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM532880(GSM532880) G659T. (cervix) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | TAX577740(Rovira) total RNA. (breast) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR553576(SRX182782) source: Testis. (testes) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................ACTTTATTTATTTATTTTCTTTTG................................................................................................................................................................................................................................................................................................................................................................. | 24 | 13.00 | 0.00 | 2.00 | - | 8.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCG..................................................................................................................................................................................................................................................................................................................................................................... | 20 | 6.00 | 0.00 | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCTTTTG................................................................................................................................................................................................................................................................................................................................................................. | 23 | 3.00 | 0.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................... | 20 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTTAATT................................................................................................................................................................................................................................................................................................................................................................ | 25 | 3.00 | 0.00 | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTAAG.................................................................................................................................................................................................................................................................................................................................................................. | 23 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCTAAG.................................................................................................................................................................................................................................................................................................................................................................. | 22 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTCG...................................................................................................................................................................................................................................................................................................................................................................... | 19 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCG..................................................................................................................................................................................................................................................................................................................................................................... | 19 | 3.00 | 0.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCCTTG.................................................................................................................................................................................................................................................................................................................................................................. | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TACTTTATTTATTTATTTTCTCAG.................................................................................................................................................................................................................................................................................................................................................................. | 24 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCCAAG.................................................................................................................................................................................................................................................................................................................................................................. | 23 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................... | 21 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTTGAG................................................................................................................................................................................................................................................................................................................................................................. | 24 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCAG.................................................................................................................................................................................................................................................................................................................................................................... | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TAATGTAGTAAACAATTAGTCATGG................................................................................................................................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ............................................................ATAATTTTTATTACTTTATTG................................................................................................................................................................................................................................................................................................................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTTCTG................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTCACG..................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................ATTTATTTATTTTCTTTCAG................................................................................................................................................................................................................................................................................................................................................................ | 20 | 2 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................CTTTATTTATTTATTTTCTAATG................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................ATTTTTATTACTTTAATAC................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................TTTATTTATTTATTTTCTTTAACG............................................................................................................................................................................................................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCTTTTCT................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTCAAG.................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................CCTGCAGAAAGAGGATGTG.................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTTTG.................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCCTG................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCTAAAT................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTATTTATTTATTTTCTTTCAGTTGG............................................................................................................................................................................................................................................................................................................................................................ | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................TTTATTTATTTATTTTCTTTCAG................................................................................................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................ACTTTATTTATTTATTTTACG.................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................CCTATTATTTTCCTCCTG.................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................ATTTATTTATTTTCTTTCAGTTA............................................................................................................................................................................................................................................................................................................................................................. | 23 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TTATTTATTTATTTTCTTCAG................................................................................................................................................................................................................................................................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTCCTCTGTCCT................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTCTTG................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................CTTTATTTATTTATTTTCTCAT.................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTATTTATTTATTTTCTTTAACG............................................................................................................................................................................................................................................................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTATTTATTTATTTTCTTTAGC................................................................................................................................................................................................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TACTTTATTTATTTATTCAAG..................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................ACTTTATTTATTTATTTTCTTTCG................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTAGCATTCTA........................................... | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| ..............................................................AATTTTTATTACTTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 7 | 0.14 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGAAGCAACACTGCCAACACTTTGATTTTGGACTTCTGACCTCCAGAACTGTGAGAGAAAATAATTTTTATTACTTTAAGCCACTCAGTTTGTTATGGCAAGTGTACTTTATTTATTTATTTTCTTTCAGATAATAAATTTATTATTGTATTATTTCTATTAAAAATAATGTAGTAAACAATTAGTCATAGGGAAAAACTTGTAGGAGGTACCAAGTTTCATCTCATGAAATTTAGTATGAAACTCAGAAATCAAGATAACAGGATACAGACCAGAGATATTCACTCTCAGGAATTTACCCTGCAGAAAGAGGAACTAATGTTTTATAAATTTATGTAACTCACCAATTATCTACAATATTTCCTCGTGGAAATGTATTCATTTTCTACAGCCAAAATCAAAGGAGATTTTCCCTATTATTTTCCTCTGTAGCATTCTAAAAGCTGAGCCTTGGAATTCTGTTTGAAATCACCTACAGAAAA ..........................................................................................................((((((..(((((((.((.....)).)))))))...((((((((((((((.......))))))))))))))..........))))))................................................................................................................................................................................................................................................................................................. ....................................................................................................101...........................................................................................195............................................................................................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM532880(GSM532880) G659T. (cervix) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | TAX577740(Rovira) total RNA. (breast) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR553576(SRX182782) source: Testis. (testes) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................................................................................................................................................................................TTTTCTACAGCCAAAATCCTG................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................................................................................................................................................................................TTTTCTACAGCCAAAACTG.................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .............................GGACTTCTGACCTCCAGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................................................................................................................................................................TTTCTACAGCCAAAATAC.................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................TAATAAATTTATTATTCA............................................................................................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................ACTTCTGACCTCCAGAACTGTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCTGTTTGAATAGG........... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................................................................................TCGTGGAAATGTATTTCA.................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAACAGAATTCCAAGGCTCA............. | 25 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................CACGAGGAAATATTGTAGATAATTGGTG................................................................................................................. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................ACATTTCCACGAGGAA.......................................................................................................... | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCTGTAGAAAATGAATAC..................................................................................... | 23 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGTAGAAAATGA....................................................................................... | 17 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |