ID: uc002wux.1_intron_9_0_chr20_25460904_r.5p
GENE: NINL(14)
chr20:25462404-25462653-


(1)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(1)
BREAST
(22)
CELL-LINE
(1)
CERVIX
(2)
FIBROBLAST
(1)
HEART
(2)
HELA
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(1)
RRP40.ip
(13)
SKIN
(2)
XRN.ip

Sense strand
ATGGAGCCCGGATGGGCGCAGACGGCAGCTCCCTGGACTCGGCCCAGCAGGTAGGAGCCCGTCCCTGGGAGGGGGCTGACCCAAGGCCTGCTGTTGACAACAAGGCCCAGAGCCAGGAAAAGAGAGTGGAGATGATGAAGATGATGATGTTGCTGTGACCTGAAGGGAGGTGGTCTGCTCTGCAGGGACTTTCCAAGGAGGATCCAGGGATGCCACAGGGTGACCTTGCAACACGGAAGGTCACCTGCAG
...................................................((((........(((((..(((......)))..(((((..((....))...))))).....))))).......(((((..((.((.......)).)).)))))....))))........................................................................................
..................................................51.............................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
........................................................................................................................................GAAGATGATGATGTTGCTGTGACCTGAAG.....................................................................................29152.0052.008.0010.00--7.00---2.003.003.00-2.001.002.00---2.001.002.00-----1.00--1.00-1.00------1.001.001.001.00---1.00--1.00--------
........................................................................................................................................GAAGATGATGATGTTGCTGTGA............................................................................................22110.0010.00---8.00------------------------------1.00-1.00--------------------
........................................................................................................................................GAAGATGATGATGTTGCTGTGACCT.........................................................................................2519.009.00--6.00-------------2.00------------------------------------1.00---
..................................................................................................................................................ATGTTGCTGTGACCTGAAGGGAG.................................................................................2318.008.00-----4.004.00--------------------------------------------------
...........................................................................................................................................GATGATGATGTTGCTGTGACCTGAAG.....................................................................................2618.008.006.002.00-------------------------------------------------------
.......................................................................................................................................TGAAGATGATGATGTTGCTGTGACCTGAAG.....................................................................................3013.003.00-----------2.00-----------------------------------1.00---------
...................AGACGGCAGCTCCCTGGACTCGGC...............................................................................................................................................................................................................2412.002.00-------2.00-------------------------------------------------
..................................................GTAGGAGCCCGTCCCTGGGAGGGGG...............................................................................................................................................................................2512.002.002.00--------------------------------------------------------
......................CGGCAGCTCCCTGGACTCGGCCCAGC..........................................................................................................................................................................................................2612.002.00---------------1.00---------------------------------1.00-------
........................................................................................................................................GAAGATGATGATGTTGCTGTGACGT.........................................................................................251.000.00--1.00------------------------------------------------------
........................................................................................................................................GAAGATGATGATGTTGCTGTGACCTGAA......................................................................................2811.001.00--1.00------------------------------------------------------
.....................ACGGCAGCTCCCTGGACTCGGCCCAGCAGGTAGGAG.................................................................................................................................................................................................3611.001.00-------1.00-------------------------------------------------
.................................TGGACTCGGCCCAGCAGGCA.....................................................................................................................................................................................................201.000.00---------------------------1.00-----------------------------
.................................................................................................................................AGATGATGAAGATGAT.........................................................................................................1601.001.00-------------------------------------------1.00-------------
................................................................................................................................................................................................................................CTTGCAACACGGAAGCCG........181.000.00-------------------------1.00-------------------------------
...........................................................................................................................................GATGATGATGTTGCTGTGACCTGAA......................................................................................2511.001.00-1.00-------------------------------------------------------
........................................................................................................................................GAAGATGATGATGTTGCTTTGC............................................................................................221.000.00---------------------------------1.00-----------------------
...................................................TAGGAGCCCGTCCCTATTC....................................................................................................................................................................................191.000.00-----------------------------------1.00---------------------
..........................................................................................................................................AGATGATGATGTTGCTGTGACCTTAAG.....................................................................................271.000.00-----------------------1.00---------------------------------
.........................................................CCCGTCCCTGGGAGGCA................................................................................................................................................................................171.000.00--------1.00------------------------------------------------
......................CGGCAGCTCCCTGGACTCGG................................................................................................................................................................................................................2011.001.00-------------------1.00-------------------------------------
.......................................................................................................................................................................AGGTGGTCTGCTCTGCTGG................................................................191.000.00-----------------1.00---------------------------------------
...................................................................................................................GGAAAAGAGAGTGGAGATGATGAAGATGATGA.......................................................................................................3211.001.00-------------1.00-------------------------------------------
................................................................................................................................................................................GCTCTGCAGGGACTTGTG........................................................181.000.00---------------------1.00-----------------------------------
..........GATGGGCGCAGACGGCAGCTCCCTGGACTC..................................................................................................................................................................................................................3011.001.00----------------------------1.00----------------------------
.................................TGGACTCGGCCCAGCAG........................................................................................................................................................................................................1711.001.00--------------------------------1.00------------------------
.....................................................................................................................AAAAGAGAGTGGAGATATT..................................................................................................................191.000.00-------------------------------------1.00-------------------
.................GCAGACGGCAGCTCCCTGGACTC..................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00----------
.................................................................................................................................AGATGATGAAGATGATGTTA.....................................................................................................201.000.00----------------------1.00----------------------------------
.....................................................................................................................................GATGAAGATGATGATGTTGCT................................................................................................2111.001.00--------------------------------------------------1.00------
.................................................................................................................................AGATGATGAAGATGATGACA.....................................................................................................201.000.00---------------------------------------------------1.00-----
.............................TCCCTGGACTCGGCCCAGCAGGCA.....................................................................................................................................................................................................241.000.00---------------1.00-----------------------------------------
....................................................................................................................................................GTTGCTGTGACCTGAGAAC...................................................................................191.000.00------------------------------------------1.00--------------
...............................................................................................................................................ATGATGTTGCTGTGACCTGAAGGGAGG................................................................................2711.001.00--------------------------------------------1.00------------
........................................................................................................................................GAAGATGATGATGTTGCTGTGATCT.........................................................................................2511.0010.00----------------------------------------------------1.00----
...................................................................................................................................ATGATGAAGATGATGATGTT...................................................................................................2040.500.50-------------------------------------------------------0.50-
.............................................................................................................................GTGGAGATGATGAAGATG...........................................................................................................1820.500.50------------------------------------------------------0.50--
....................................................................................................................................TGATGAAGATGATGATGTT...................................................................................................1960.330.33--------------------------------------------------------0.33

Antisense strand
ATGGAGCCCGGATGGGCGCAGACGGCAGCTCCCTGGACTCGGCCCAGCAGGTAGGAGCCCGTCCCTGGGAGGGGGCTGACCCAAGGCCTGCTGTTGACAACAAGGCCCAGAGCCAGGAAAAGAGAGTGGAGATGATGAAGATGATGATGTTGCTGTGACCTGAAGGGAGGTGGTCTGCTCTGCAGGGACTTTCCAAGGAGGATCCAGGGATGCCACAGGGTGACCTTGCAACACGGAAGGTCACCTGCAG
...................................................((((........(((((..(((......)))..(((((..((....))...))))).....))))).......(((((..((.((.......)).)).)))))....))))........................................................................................
..................................................51.............................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
.....................................................................................................................AAAAGAGAGTGGAGAGTCC.................................................................................................................. 191.000.00-----------------1.00---------------------------------------
......CTGCGCCCATCCGGG..................................................................................................................................................................................................................................... 1511.001.00------------------------------1.00--------------------------
...................................................................................................................................ATGATGAAGATGATGATTGTC.................................................................................................. 211.000.00------------------------1.00--------------------------------