ID: uc002wpj.2_intron_1_0_chr20_16729652_f.3p
GENE: (2)
chr20:16730348-16730597+


(1)
B-CELL
(1)
BRAIN
(5)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
RRP40.ip
(5)
SKIN
(1)
XRN.ip

Sense strand
ACAGTAGATGCACAATTCCTGCGGGTTAACTTAGTGCTCCAAGTAAACTTCGGATTTGCCGCAGCGCCCCCTGGACCCCGGAGTGAAAGGGAGGTATTGGCAGCTATGATTCTCACTATCAGCAAAGAGGACGCCTGCGAGTTTCTCAGAAGACACTCAGCATCAGCTTTTTCCTGATTGCTATTCTTCTGGGCACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGGTTATTTCCCCAG
................................................................................(((((.....((((.(((.((((...((.(((((............))))))).)))).))).))))......))))).((....))...................................................................................
.........................................................................74..............................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040027(GSM532912)
G220T. (cervix)
..............................................................................CGGAGTGAAAGGGAGTCGG.........................................................................................................................................................1928.000.007.004.00-1.00-2.001.00-1.00---2.001.001.001.001.001.00--1.00-1.00-1.001.00---1.00
.............................................................................CCGGAGTGAAAGGGAGTCGG.........................................................................................................................................................20123.001.004.004.004.001.00-1.001.00-1.00-2.002.00---------1.00-1.00---1.00--
..............................................................................CGGAGTGAAAGGGAGTC...........................................................................................................................................................178.000.004.001.00-1.001.00----1.00--------------------
..............................................................................CGGAGTGAAAGGGAGTCG..........................................................................................................................................................186.000.001.003.00-------1.00------------------1.00-
.............................................................................CCGGAGTGAAAGGGAGTC...........................................................................................................................................................1815.001.00-2.00-----2.00----------1.00-----------
.............................................................................CCGGAGTGAAAGGGAGT............................................................................................................................................................1713.001.001.00---2.00-------------------------
.............................................................................CCGGAGTGAAAGGGAGTCG..........................................................................................................................................................1912.001.002.00-----------------------------
...................................................................CCCCTGGACCCCGGACTC.....................................................................................................................................................................181.000.00--------------------------1.00---
.............................................................................CCGGAGTGAAAGGGAG.............................................................................................................................................................1611.001.00------1.00-----------------------
.....................................................................................................................................................AAGACACTCAGCATCCC....................................................................................171.000.00-------------------1.00----------

Antisense strand
ACAGTAGATGCACAATTCCTGCGGGTTAACTTAGTGCTCCAAGTAAACTTCGGATTTGCCGCAGCGCCCCCTGGACCCCGGAGTGAAAGGGAGGTATTGGCAGCTATGATTCTCACTATCAGCAAAGAGGACGCCTGCGAGTTTCTCAGAAGACACTCAGCATCAGCTTTTTCCTGATTGCTATTCTTCTGGGCACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGGTTATTTCCCCAG
................................................................................(((((.....((((.(((.((((...((.(((((............))))))).)))).))).))))......))))).((....))...................................................................................
.........................................................................74..............................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040027(GSM532912)
G220T. (cervix)