ID: uc002whl.2_intron_0_0_chr20_2854407_f.3p
GENE: (1)
chr20:2891387-2891636+


(1)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGACTACAGGCACCCACCACACGTCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCGGACCTCATGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATCACAGGTGTGAGCCACCGCACCCGGCCTACTTTTTATTTTAACTTTTTTTTTTTTTTTTGTAGAGATGTGGTCTCACTGTGTTGCCCAGGCTGGTCTCAATCTCCTGGGGTCA
............................................................................................................................(((((((((((......((((.....))))...))))))..))))).((((((.((................)).)))))).............................................
...........................................................................................................................124................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTG...........................................................298.000.00--3.004.001.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTTG......................................................3418.003.00--3.001.001.003.00-------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTACGGG...............................................257.000.006.00------------1.00-----------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTAAG...................................................267.000.00--3.004.00---------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTG.......................................................3317.006.00--3.001.001.002.00-------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTG.........................................................3117.001.00--5.001.001.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTG........................................................326.000.00--4.001.001.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTT........................................................3216.006.00--2.001.00-1.002.00------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTATG...................................................264.000.001.00-2.001.00---------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTTTT................................................244.000.001.002.001.00----------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTATG...................................................254.000.00--2.002.00---------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTG............................................................284.000.00--1.001.001.001.00-------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTTTG.....................................................3514.004.00---3.001.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTG..........................................................3014.001.00--1.002.00-1.00-------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTATG.....................................................243.000.00--2.001.00---------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTT..................................................223.000.002.001.00-----------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTT.......................................................3313.003.00--2.001.00---------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCAGGC.......................................................................................283.000.001.002.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTTGAG......................................................................................................203.000.00-3.00-----------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCCGGCCAGGA..................................................................................332.000.00-2.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGACA....................................................................................................252.000.00-2.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGGGAG...................................................................................................2602.001.002.00------------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTTT......................................................3412.002.00--1.001.00---------------------------------------
...................................................................TGTTAGCCAGGATGGTCTCGATCTCCGAGC.........................................................................................................................................................302.000.002.00------------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGTA...................................................................................................262.000.00-2.00-----------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTG..............................................................262.000.00--1.00--1.00-------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTCTTG..................................................262.000.00--1.00--1.00-------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCCACGC...............................................................................................272.000.002.00------------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGGGCG...................................................................................................2602.001.001.00------------1.00-----------------------------
..............................................................................ATGGTCTCGATCTCCGAGC.........................................................................................................................................................192.000.002.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGATG....................................................................................................242.000.00-2.00-----------------------------------------
.........................................TTTTTAGTAGAGACGGGGTTTCACTCACC....................................................................................................................................................................................292.000.00-2.00-----------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCCGGCCGG....................................................................................312.000.001.001.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGGGCG.......................................................................................................222.000.001.001.00-----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTGGAG................................................242.000.00-2.00-----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTTT.................................................232.000.001.00-----1.00------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTACA...................................................252.000.00--2.00----------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTTCTTG..................................................252.000.00----2.00--------------------------------------
..............................................AGTAGAGACGGGGTTTCACTGCTCG...................................................................................................................................................................................252.000.00-2.00-----------------------------------------
.................................................AGAGACGGGGTTTCACTGTGTTAGCCAGGGCGG........................................................................................................................................................................332.000.001.001.00-----------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTTGTTT..................................................251.000.00--1.00----------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTCCCG...................................................241.000.00----1.00--------------------------------------
...........................................................................................................................................................................TATTTTAACTTTTTTTTTTTTTTAATT....................................................271.000.00------1.00------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCCGTGC...............................................................................................271.000.00-1.00-----------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTCTT......................................................341.000.00----1.00--------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCAGCC..........................................................................................251.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGACTAC..................................................................................................261.000.00-1.00-----------------------------------------
............................................................................................................................................................................ATTTTAACTTTTTTTTTTTAACA.......................................................231.000.00----1.00--------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGGGCC.......................................................................................................221.000.001.00------------------------------------------
................................................TAGAGACGGGGTTTCACTGAT.....................................................................................................................................................................................211.000.00-1.00-----------------------------------------
.............................................TAGTAGAGACGGGGTTTCACTGTGTTCCG................................................................................................................................................................................291.000.00-1.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGCAACC................................................................................................291.000.00-1.00-----------------------------------------
.................................................................................................................................................TGAGCCACCGCACCCGGCCTACTTTGCG.............................................................................281.000.001.00------------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTGTGATC................................................281.000.00------1.00------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCTCTG...............................................................................................291.000.001.00------------------------------------------
......................................GTATTTTTAGTAGAGACGGGGTTTCACTGTGG....................................................................................................................................................................................321.000.00---------1.00---------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCCGGG.......................................................................................281.000.001.00------------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCGGCC...............................................................................................201.000.001.00------------------------------------------
................................................................................................................................................................................TAACTTTTTTTTTTTTTTTTGTT...................................................231.000.00------1.00------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGCGACC................................................................................................291.000.001.00------------------------------------------
...........................................................................................................................................................CACCCGGCCTACTTTTTATTTTAACTTTTTTTG..............................................................331.000.00---1.00---------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCCACGTGC.............................................................................................291.000.001.00------------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTT..........................................................3011.001.00---1.00---------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTGAG................................................241.000.001.00------------------------------------------
......................................................................................................................CCTCCCAAAGTGCTGGGATCACAGGTGTGCGC....................................................................................................321.000.001.00------------------------------------------
...............................................................................................................................................TGTGAGCCACCGCACCCGGCCTACTTTGC..............................................................................291.000.001.00------------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTT...........................................................2911.001.00--1.00----------------------------------------
.................................................AGAGACGGGGTTTCACTGCCC....................................................................................................................................................................................211.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTAGCC....................................................................................................241.000.001.00------------------------------------------
....................................................................................................................................................................................................................ACTGTGTTGCCCAGGCTGGTCCTAT.............251.000.00-1.00-----------------------------------------
..........................................TTTTAGTAGAGACGGGGTTTCACTGTGAC...................................................................................................................................................................................291.000.00-1.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGTGCT...................................................................................................2601.001.001.00------------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTATT...................................................261.000.00----1.00--------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTATTT..................................................261.000.00----1.00--------------------------------------
...................................................................................................................................................................CTACTTTTTATTTTAACTTTTTTTTTTTG..........................................................291.000.00---1.00---------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTCTTG.......................................................3311.001.00------1.00------------------------------------
.................................................................TGTGTTAGCCAGGATGGTCTCGATCTCCGAC..........................................................................................................................................................311.000.001.00------------------------------------------
................................................................................................................................................................................................................TCTCACTGTGTTGCCCAGGCTGGTCCG...............271.000.00-1.00-----------------------------------------
..............................................AGTAGAGACGGGGTTTCACTGCCC....................................................................................................................................................................................241.000.00-1.00-----------------------------------------
............................................................................................................................................................................ATTTTAACTTTTTTTTTTTTTTTATTT...................................................271.000.00----1.00--------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGGGAG.................................................................................................281.000.00-1.00-----------------------------------------
....................................................................................................................................................................................................................ACTGTGTTGCCCAGGCTGGGACC...............231.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGGCAG.................................................................................................271.000.00-1.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCACTG................................................................................................2601.001.00-1.00-----------------------------------------
................................................TAGAGACGGGGTTTCACTGTGTTTATC...............................................................................................................................................................................271.000.00-1.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGTGG..................................................................................................241.000.00-1.00-----------------------------------------
....................................................................................................................................................................................................................ACTGTGTTGCCCAGGCTGGTCCTGC.............251.000.001.00------------------------------------------
...................................................................................................................................................................................................................CACTGTGTTGCCCAGGCTGGTAAG...............241.000.00----------------------------------------1.00--
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGCCTTGC...............................................................................................301.000.001.00------------------------------------------
...................................................................................................................................................AGCCACCGCACCCGGCCTACTAGC...............................................................................241.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGGGAG.................................................................................................271.000.00-1.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGATTC...................................................................................................261.000.001.00------------------------------------------
.........................................................................CCAGGATGGTCTCGATCTCCGTCC.........................................................................................................................................................241.000.00-1.00-----------------------------------------
................................TTTTTTGTATTTTTAGTAGAGACGGGGTCAC...........................................................................................................................................................................................311.000.001.00------------------------------------------
.................................................AGAGACGGGGTTTCACTGTGTTAGCCACGG...........................................................................................................................................................................301.000.00-1.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGC....................................................................................................2201.001.00----------------1.00--------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTGGTC................................................241.000.00-1.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCCACCGCAGCC..........................................................................................321.000.001.00------------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTCAG.....................................................231.000.00----1.00--------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTTCTGG..................................................251.000.001.00------------------------------------------
....................................................................................................ATGATCCACCTGCCTTGGCCCA................................................................................................................................221.000.00-1.00-----------------------------------------
............................................................................................................................................................................ATTTTAACTTTTTTTTTTTTTTAATT....................................................261.000.00-----1.00-------------------------------------
........................................................................................TCTCCGGACCTCATGATCTCTG............................................................................................................................................221.000.00---------------------1.00---------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCCACCGCACA...........................................................................................311.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCACCGCAG............................................................................................321.000.001.00------------------------------------------
..........................................................................................................................................................................TTATTTTAACTTTTTTTTTTCG..........................................................221.000.00-----1.00-------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTCTTG......................................................3411.001.00-----1.00-------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGCACCC................................................................................................2601.001.001.00------------------------------------------
...........................................................................................................................................................................TATTTTAACTTTTTTTTTTTTTTTTAT....................................................271.000.00-----1.00-------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGGTC........................................................................................................211.000.00-------------------1.00-----------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGAA...................................................................................................261.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCTG.................................................................................................271.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCAAAG................................................................................................281.000.00-1.00-----------------------------------------
................................................................................................................................TGCTGGGATCACAGGTGTGAGGGAG.................................................................................................251.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCACCTG..............................................................................................301.000.001.00------------------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTTTTTTTGTTTTT................................................251.000.001.00------------------------------------------
..........................................................................................................CACCTGCCTTGGCCTCCCAAAGTTTCA.....................................................................................................................271.000.00----------------------------------1.00--------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTGAGCCACCCTC.............................................................................................321.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGACCCC..................................................................................................261.000.00-1.00-----------------------------------------
...............................................GTAGAGACGGGGTTTCACTGTAT....................................................................................................................................................................................231.000.00-----------1.00-------------------------------
...............................................GTAGAGACGGGGTTTCAGCA.......................................................................................................................................................................................201.000.00----------1.00--------------------------------
........................................................................................................................................................................TTTTATTTTAACTTTTTTCTCG............................................................221.000.00----1.00--------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTGGGGA.................................................271.000.00-1.00-----------------------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGTAGAGGGTC............................................251.000.001.00------------------------------------------
.......................................................................AGCCAGGATGGTCTCGATCTCCGACCC........................................................................................................................................................271.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGACCC.................................................................................................271.000.001.00------------------------------------------
................................................TAGAGACGGGGTTTCACTGTGTCCG.................................................................................................................................................................................251.000.00-1.00-----------------------------------------
................................TTTTTTGTATTTTTAGTAGAGACGGGGTGC............................................................................................................................................................................................301.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGGACA.......................................................................................................211.000.001.00------------------------------------------
......................................................................................................GATCCACCTGCCTTGGCCTCCCAAAGTTAGG.....................................................................................................................311.000.001.00------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTGTAGAGATGTCG..........................................211.000.00--------------------1.00----------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTAT....................................................251.000.00----1.00--------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTAGACTG..............................................261.000.00---1.00---------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTCATG....................................................251.000.00----1.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTCTG.........................................................311.000.00----1.00--------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTTGT................................................241.000.00-1.00-----------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCAGAC.......................................................................................281.000.001.00------------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTCAAG...................................................261.000.00-----1.00-------------------------------------
..............................................AGTAGAGACGGGGTTTCACTCGTG....................................................................................................................................................................................241.000.001.00------------------------------------------
..............................................................................................................................................................................TTTAACTTTTTTTTTTTTTTTTGTCGAG................................................281.000.00------1.00------------------------------------
.................................................AGAGACGGGGTTTCACTGTGTTAGCCAGCCGG.........................................................................................................................................................................321.000.00-1.00-----------------------------------------
.................................................................TGTGTTAGCCAGGATGGTCTGACC.................................................................................................................................................................241.000.001.00------------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTACG...................................................261.000.00--1.00----------------------------------------
.....................................................................TTAGCCAGGATGGTCTCGACCCT..............................................................................................................................................................231.000.001.00------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTCAC................................................241.000.00-1.00-----------------------------------------
............................................................................................................................AAAGTGCTGGGATCACAGGTGTGGGAG...................................................................................................271.000.001.00------------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTTCC....................................................251.000.001.00------------------------------------------
........................................ATTTTTAGTAGAGACGGGGTTTGCCG........................................................................................................................................................................................261.000.001.00------------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGGACG.......................................................................................................221.000.00-1.00-----------------------------------------
................................................................................................................................................................................................................TCTCACTGTGTTGCCCAGGCTGGTCTGGG.............291.000.001.00------------------------------------------
..........................................................................................................CACCTGCCTTGGCCTCCCAAAGTTAG......................................................................................................................261.000.00---------------1.00---------------------------
............................................................TTCACTGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................271.000.001.00------------------------------------------
............................................TTAGTAGAGACGGGGTTTCACTGTAGCT..................................................................................................................................................................................281.000.00------------1.00------------------------------
.......................................................................................ATCTCCGGACCTCATGATCTCTG............................................................................................................................................231.000.00------------------------------------------1.00
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTA...........................................................291.000.00--1.00----------------------------------------
...................................................AGACGGGGTTTCACTGTGTTAGCCAGGAAC.........................................................................................................................................................................301.000.00-1.00-----------------------------------------
..........................................TTTTAGTAGAGACGGGGTTTCACTTTGC....................................................................................................................................................................................281.000.00-1.00-----------------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTTTTTTTGTGGGT................................................251.000.001.00------------------------------------------
................................................TAGAGACGGGGTTTCACTGTGTTAGCCTCG............................................................................................................................................................................301.000.00-1.00-----------------------------------------
..........................................................................................................................................ACAGGTGTGAGCCACCGCACCCGGCAGC....................................................................................281.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGACG....................................................................................................241.000.00-1.00-----------------------------------------
.............................................................TCACTGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................261.000.001.00------------------------------------------
.....................................TGTATTTTTAGTAGAGACGGGGTTTGTAG........................................................................................................................................................................................291.000.00------------------1.00------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCACCCCAC............................................................................................321.000.001.00------------------------------------------
.............................................................................................................................................................................TTTTAACTTTTTTTTTTTTTTTATT....................................................251.000.00-----1.00-------------------------------------
...........................................................................................................................................................................TATTTTAACTTTTTTTTTTTTTAAG......................................................251.000.00--1.00----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTGG.................................................231.000.00---1.00---------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGTG.......................................................................................................2201.001.00---------------------------1.00---------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCAAAC................................................................................................281.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCACCGCCC............................................................................................321.000.001.00------------------------------------------
...............................................................ACTGTGTTAGCCAGGATGGTCTCGATCTCGGG...........................................................................................................................................................321.000.00-1.00-----------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTTTTT.....................................................3511.002.00--1.00----------------------------------------
............................................................................................................................................AGGTGTGAGCCACCGCACCCGGCGCC....................................................................................261.000.001.00------------------------------------------
............................................................................................................................AAAGTGCTGGGATCACAGGTGTGTGAG...................................................................................................271.000.00-1.00-----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTTTG................................................241.000.001.00------------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTTCTG......................................................341.000.00----1.00--------------------------------------
..................................................................................................................................................................CCTACTTTTTATTTTAACTTTTTTTTTTTTCTTT......................................................3411.001.00--1.00----------------------------------------
.................................................................................................................................................TGAGCCACCGCACCCGGCCTACTTTGCT.............................................................................281.000.001.00------------------------------------------
.......................................................................AGCCAGGATGGTCTCGATCTCCGACA.........................................................................................................................................................261.000.001.00------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTAGAGAGAG............................................281.000.00-1.00-----------------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTGTAGAGATGTGGTCCC......................................271.000.001.00------------------------------------------
...........................................TTTAGTAGAGACGGGGTTTCACTGTAGTT..................................................................................................................................................................................291.000.00------------1.00------------------------------
...............................................................ACTGTGTTAGCCAGGATGGTCTCGACCCC..............................................................................................................................................................291.000.001.00------------------------------------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCGCCC.......................................................................................281.000.001.00------------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGATCTG..................................................................................................261.000.00-1.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTGGGGG.....................................................................................................2401.001.001.00------------------------------------------
...................................................................................................................................................................CTACTTTTTATTTTAACTTTTTTTTTTTTTG........................................................311.000.00--1.00----------------------------------------
...................................................AGACGGGGTTTCACTGTGTCAGG................................................................................................................................................................................231.000.00-1.00-----------------------------------------
.............................................TAGTAGAGACGGGGTTTCAGCTC......................................................................................................................................................................................231.000.00-1.00-----------------------------------------
.......................................................................AGCCAGGATGGTCTCGATCTCCGACCA........................................................................................................................................................271.000.001.00------------------------------------------
.................................................................TGTGTTAGCCAGGATGGTCCGG...................................................................................................................................................................221.000.001.00------------------------------------------
.....................................................ACGGGGTTTCACTGTGTTAGAAA..............................................................................................................................................................................231.000.00------------------------------1.00------------
.......................................................................................................................................ATCACAGGTGTGAGCCACCGCACCCGGCCTGCC..................................................................................331.000.00-1.00-----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTAAG................................................241.000.001.00------------------------------------------
.....................................................ACGGGGTTTCACTGTGTTAGCCAGGATGAGC......................................................................................................................................................................311.000.00-1.00-----------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCCACCCCT.............................................................................................311.000.001.00------------------------------------------
.....................................................ACGGGGTTTCACTGTGTTAGCCAGGATGACT......................................................................................................................................................................311.000.00-1.00-----------------------------------------
.............................................................................................................................AAGTGCTGGGATCACAGGTG.........................................................................................................2001.001.00---------------------------------1.00---------
..................................................................................................................................................................................................................TCACTGTGTTGCCCAGGCTGGG..................221.000.00---------1.00---------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTTTTA................................................241.000.00------1.00------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTTGGCGG.................................................261.000.001.00------------------------------------------
............................................................................................................................................................................ATTTTAACTTTTTTTTTTTTTTAATG....................................................261.000.00----1.00--------------------------------------
...........................................................................AGGATGGTCTCGATCTCCGGACCCCG.....................................................................................................................................................261.000.00-1.00-----------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTTTTTTGTCAAG................................................241.000.00---1.00---------------------------------------
..............................................................................................................................AGTGCTGGGATCACAGGTGTGAGCAACC................................................................................................281.000.001.00------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTTTTTTTCCAG..................................................251.000.00----1.00--------------------------------------

Antisense strand
GGACTACAGGCACCCACCACACGTCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCGGACCTCATGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATCACAGGTGTGAGCCACCGCACCCGGCCTACTTTTTATTTTAACTTTTTTTTTTTTTTTTGTAGAGATGTGGTCTCACTGTGTTGCCCAGGCTGGTCTCAATCTCCTGGGGTCA
............................................................................................................................(((((((((((......((((.....))))...))))))..))))).((((((.((................)).)))))).............................................
...........................................................................................................................124................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
...............................................................................................ACCTCATGATCCACCTGCCTTAAA................................................................................................................................... 244.000.00-------4.00-----------------------------------
............................................................................................................................................................................................................GTGGTCTCACTGTGTTGCCCAGGCTGGTCTCACC............ 343.000.002.001.00-----------------------------------------
.GACTACAGGCACCCACAGA...................................................................................................................................................................................................................................... 192.000.00-------2.00-----------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTTTTTTTGTGT.................................................. 232.000.00--------------2.00----------------------------
...........................................................................................................................................................................................................TGTGGTCTCACTGTGTTGCCCAGGCTGGTCCTC.............. 332.000.00-2.00-----------------------------------------
.GACTACAGGCACCCACCACTCAG.................................................................................................................................................................................................................................. 232.000.00--------2.00----------------------------------
.........................................................................................................................................................................................................................GTTGCCCAGGCTGGTCTCAATGCTG........ 251.000.00-1.00-----------------------------------------
......................................................................................................................................................................................................................................GTCTCAATCTCCTGGGGGTAA 211.000.00--------------------------------------1.00----
....................................................GACGGGGTTTCACTGTGTCACT................................................................................................................................................................................ 221.000.001.00------------------------------------------
.................................................................................................................................................TGAGCCACCGCACCCGGCCTGGTC................................................................................. 241.000.001.00------------------------------------------
...........................................................................................................................................CAGGTGTGAGCCACCGCACCCGGCCTCAAC................................................................................. 301.000.00-1.00-----------------------------------------
..................................................................................................TCATGATCCACCTGCTTT...................................................................................................................................... 181.000.00-----------------------------1.00-------------
....................................................................................................................................................GCCACCGCACCCGGCCTACTTCC............................................................................... 231.000.00-1.00-----------------------------------------
.....................................................................................................................................................CCACCGCACCCGGCCTACTTGGC.............................................................................. 231.000.00-1.00-----------------------------------------
...................AAAAATTAGCTGGACGTG..................................................................................................................................................................................................................... 1801.001.00----------------------1.00--------------------
...........................................................................................................................................................................................................TGTGGTCTCACTGTGTTGCCCAGGCTC.................... 271.000.001.00------------------------------------------
..........................................................................CAGGATGGTCTCGATCTCCCCTA......................................................................................................................................................... 231.000.00-------------------------------------1.00-----
.................................................................................................................................................................................................................CTCACTGTGTTGCCCAGGCTGGTCTCACCTC.......... 311.000.00-1.00-----------------------------------------
......................................................................................................................ACCTGTGATCCCAGCACTTTGGGAGG.......................................................................................................... 2601.001.00----------1.00--------------------------------
...........ACCCACCACACGTCCATTG............................................................................................................................................................................................................................ 191.000.00----------------------------1.00--------------
.........................................................................................................................................................................................................................GTTGCCCAGGCTGGTCTCAATCGGGG....... 261.000.001.00------------------------------------------
............................................................................GGATGGTCTCGATCTCGCC........................................................................................................................................................... 191.000.00------------------------1.00------------------
...............................................................................................ACCTCATGATCCACCTGTAGG...................................................................................................................................... 211.000.00-------------------------1.00-----------------
.........................................................................................................................................................................................................................GTTGCCCAGGCTGGTCTCAATCTGGC....... 261.000.00-1.00-----------------------------------------
......................................................................................................................................................................................................................TGTGTTGCCCAGGCTGGTCTCGAG............ 241.000.001.00------------------------------------------
..........................................................................CAGGATGGTCTCGATCTCCCC........................................................................................................................................................... 211.000.00-1.00-----------------------------------------
..............................................................CACTGTGTTAGCCAGGATGGTCTCGGTTG............................................................................................................................................................... 291.000.00-----------------------------------1.00-------
..................................................................................................................................................GAGCCACCGCACCCGGCCGGC................................................................................... 211.000.00-----------1.00-------------------------------
.......................................................................................................................CTCCCAAAGTGCTGGGATCACAGGTGTCCCG.................................................................................................... 311.000.001.00------------------------------------------
............................................................................GGATGGTCTCGATCTCCGGACCTGGCC................................................................................................................................................... 271.000.001.00------------------------------------------
...............................................................................................ACCTCATGATCCACCTGCCTTGGAAA................................................................................................................................. 261.000.00---------------------------------------1.00---
....................................................................................................................................................................................................................ACTGTGTTGCCCAGGCTGGTCTTGG............. 251.000.001.00------------------------------------------
..................................................................................................................................................GAGCCACCGCACCCGGTGG..................................................................................... 191.000.00-----------------------1.00-------------------
..............................................................................ATGGTCTCGATCTCCGTTT......................................................................................................................................................... 191.000.00-------------------------------1.00-----------
............................................................................................................................................................................................................GTGGTCTCACTGTGTTGCCCAGGCTGGTCTCATG............ 341.000.00-1.00-----------------------------------------
.........................................................................................................................................................................................................................GTTGCCCAGGCTGGTCTCAATCGGTG....... 261.000.001.00------------------------------------------
.................................................................................................CTCATGATCCACCTGCCTTTAA................................................................................................................................... 221.000.00------------------------------------1.00------
.......................................................................................................................................................................................................................GTGTTGCCCAGGCTGGTCTCAATCGCA........ 271.000.00-1.00-----------------------------------------
................................................................................................................................................GTGAGCCACCGCACCCGGCCTATTG................................................................................. 251.000.00-1.00-----------------------------------------
...................................................AGACGGGGTTTCACTGTGTTTTA................................................................................................................................................................................ 231.000.00-----------------------------------------1.00-
......................................................................................................................................................................CTTTTTATTTTAACTTTTCTTG.............................................................. 221.000.00--------------------------------1.00----------
....................................................GACGGGGTTTCACTGTGTTAGCCACCTG.......................................................................................................................................................................... 281.000.001.00------------------------------------------
..........................................................................................AAGGCAGGTGGATCATGAGGTCCGGA...................................................................................................................................... 2611.001.00--------------------------1.00----------------
...............................................................................................................................................TGTGAGCCACCGCACCCGGCCTAT................................................................................... 241.000.00-----------------1.00-------------------------
................................................................................................CCTCATGATCCACCTGCCTCAGG................................................................................................................................... 231.000.00-1.00-----------------------------------------
...........................................................................................................................................................................................................................TGCCCAGGCTGGTCTCAATCTCC........ 231.000.00-1.00-----------------------------------------
............................................................................................................................................................................................................................ACCCCAGGAGATTGAGACCAGCCTGGGC.. 2820.500.500.50------------------------------------------
................................................................................................................................................................................................................ATTGAGACCAGCCTGGGCAACACAGTGAGA............ 3040.500.50-0.50-----------------------------------------
.........................................................................................AGGCAGGTGGATCATGAGGTCCGGAG....................................................................................................................................... 2670.140.14-0.14-----------------------------------------
.......................................................................................................................................................................................................ACCAGCCTGGGCAACACAGTGAGACCACATCTC.................. 3370.140.14-0.14-----------------------------------------
.........................................................................................................................................................................................................ACCAGCCTGGGCAACACAGTGAGACCACATC.................. 3190.110.110.11------------------------------------------