ID: uc002web.2_intron_1_0_chr20_634965_r.5p
GENE: (1)
chr20:655913-656162-


(4)
AGO2.ip
(1)
BRAIN
(8)
BREAST
(9)
CELL-LINE
(6)
CERVIX
(4)
HEART
(2)
LIVER
(1)
OTHER
(30)
SKIN
(1)
UTERUS

Sense strand
GGAGACAGCCTACGTGCTGCCTGGCGCCCGGGGGCCTCCCGGGGACAACGGTGAGTGGGACCCGGCGGGGGCGGGGGGTTGGGAGAAGAGGCGAGGGGAGCTGGGGCCCTCCCCAGCTTGGGCCACGAGGAGGGGCGCGTGCGACAGGAAACCCCCGGGAGGAGATCTCTCTGGCCGTGGGCTCCTCCCGGGCTTTCCAAGGGCCGTGCGGGCGGGGCAGGGGCTAGGTCGTACAAAGGGAAAGTCGCGG
............................................................(((.((....)).)))....(((((....(((..((....))...)))))))).........................................................................................................................................
........................................................57......................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925PAZD5GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM532877(GSM532877)
G691N. (cervix)
SRR189782GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189785SRR040031(GSM532916)
G013T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532887(GSM532887)
G761N. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532881(GSM532881)
G696N. (cervix)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................CGGCGGGGGCGGGGGG............................................................................................................................................................................1609.009.008.00------------------------------1.00----------------------------------
.............................................................CCGGCGGGGGCGGGGGTGGG.........................................................................................................................................................................208.000.00----1.00------1.002.00--1.001.00-------------1.00-----1.00-----------------------------
.............................................................CCGGCGGGGGCGGGGGTGG..........................................................................................................................................................................195.000.00-------1.00------1.00-------------1.001.00-------1.00----------------------------
.............................................................CCGGCGGGGGCGGGGGGGGG.........................................................................................................................................................................205.000.00---3.00------1.00---------1.00---------------------------------------------
.............................................................CCGGCGGGGGCGGGGGGGG..........................................................................................................................................................................194.000.00-2.00--------------------1.001.00------------------------------------------
.............................................................CCGGCGGGGGCGGGGGGGGGC........................................................................................................................................................................213.000.00----1.00--------------1.00-------------1.00--------------------------------
..............................................................CGGCGGGGGCGGGGG.............................................................................................................................................................................1503.003.002.001.00----------------------------------------------------------------
................................................................GCGGGGGCGGGGGGT...........................................................................................................................................................................1501.001.00-----------------------------------1.00------------------------------
............................................................CCCGGCGGGGGCGGG...............................................................................................................................................................................1501.001.00----------1.00-------------------------------------------------------
..................................................................GGGGGCGGGGGGTTGG........................................................................................................................................................................1601.001.00-1.00----------------------------------------------------------------
............................................................CCCGGCGGGGGCGGGGGGCCGG........................................................................................................................................................................221.000.00-----------1.00------------------------------------------------------
..........................................................................................GCGAGGGGAGCTGGGTACG.............................................................................................................................................191.000.00---------------------1.00--------------------------------------------
...........................................................ACCCGGCGGGGGCGGGGGT............................................................................................................................................................................191.000.00-1.00----------------------------------------------------------------
..................................................................GGGGGCGGGGGGTTGGGCG.....................................................................................................................................................................191.000.00--------------------------1.00---------------------------------------
..............................................................CGGCGGGGGCGGGGGGTTGGT.......................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------------
.................................................................................................................................GAGGGGCGCGTGCGATAA.......................................................................................................181.000.00---------------------------1.00--------------------------------------
...................................................................GGGGCGGGGGGTTGGACGA....................................................................................................................................................................191.000.00---------1.00--------------------------------------------------------
...............................................................GGCGGGGGCGGGGGGTCGAG.......................................................................................................................................................................201.000.00------1.00-----------------------------------------------------------
.................................................GGTGAGTGGGACCCGAG........................................................................................................................................................................................171.000.00----------------------------------------1.00-------------------------
.............................................................CCGGCGGGGGCGGGGGGGGGG........................................................................................................................................................................211.000.00------------------------1.00-----------------------------------------
..............................................................CGGCGGGGGCGGGGGGTTGG........................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------
.............................................................CCGGCGGGGGCGGGGGGGGGT........................................................................................................................................................................211.000.00-------1.00----------------------------------------------------------
..........................CCCGGGGGCCTCCCGGGG..............................................................................................................................................................................................................1811.001.00-------------1.00----------------------------------------------------
..............................................................CGGCGGGGGCGGGGGGT...........................................................................................................................................................................1780.380.380.120.12------------------------------------------------0.12---------------
.........................................................GGACCCGGCGGGGGCGG................................................................................................................................................................................1740.250.25-------------------------------------------0.25----------------------

Antisense strand
GGAGACAGCCTACGTGCTGCCTGGCGCCCGGGGGCCTCCCGGGGACAACGGTGAGTGGGACCCGGCGGGGGCGGGGGGTTGGGAGAAGAGGCGAGGGGAGCTGGGGCCCTCCCCAGCTTGGGCCACGAGGAGGGGCGCGTGCGACAGGAAACCCCCGGGAGGAGATCTCTCTGGCCGTGGGCTCCTCCCGGGCTTTCCAAGGGCCGTGCGGGCGGGGCAGGGGCTAGGTCGTACAAAGGGAAAGTCGCGG
............................................................(((.((....)).)))....(((((....(((..((....))...)))))))).........................................................................................................................................
........................................................57......................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925PAZD5GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM532877(GSM532877)
G691N. (cervix)
SRR189782GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189785SRR040031(GSM532916)
G013T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532887(GSM532887)
G761N. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532881(GSM532881)
G696N. (cervix)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................CCCGGCGGGGGCGGGGGGGG.......................................................................................................................................................................... 203.000.00--2.00----------1.00----------------------------------------------------
.............................................................CCGGCGGGGGCGGGGGGT........................................................................................................................................................................... 182.000.00-----2.00------------------------------------------------------------
........................................................GGGACCCGGCGGGGGCGGG............................................................................................................................................................................... 191.330.00-----0.11--------0.220.22--------------------------0.11------0.11--0.110.11-----0.11--0.110.11--
........................................................GGGACCCGGCGGGGGCCGG............................................................................................................................................................................... 191.220.00----------------0.11------------------------0.110.11-0.11-0.110.110.11--0.11----0.11---0.11---0.11-
................................................................................GGGAGAAGAGGCGAGCC......................................................................................................................................................... 171.000.00-------------------------1.00----------------------------------------
...............................................................................................................................................................CCACGGCCAGAGAGATCTCCT...................................................................... 2111.001.00--------------------------------------1.00---------------------------
.....................................................................................................................TTGGGCCACGAGGAGTGG................................................................................................................... 181.000.00--------------------------------1.00---------------------------------
...........................................GACAACGGTGAGTGGGATTTA.......................................................................................................................................................................................... 211.000.00------------------1.00-----------------------------------------------
...............................................................................TGGGAGAAGAGGCGAGGGGT....................................................................................................................................................... 201.000.00------1.00-----------------------------------------------------------
............................................................................................................................................................................GGCCGTGGGCTCCTCTAG............................................................ 181.000.00---------1.00--------------------------------------------------------
......................GGCGCCCGGGGGCCTCCCCC................................................................................................................................................................................................................ 201.000.00-----------------1.00------------------------------------------------
............................................................CCCGGCGGGGGCGGGGGGGA.......................................................................................................................................................................... 201.000.00--1.00---------------------------------------------------------------
............................................................CCCGGCGGGGGCGGGGGGG........................................................................................................................................................................... 191.000.00--1.00---------------------------------------------------------------
......................................................GTGGGACCCGGCGGGGGGGG................................................................................................................................................................................ 201.000.00--------1.00---------------------------------------------------------
.........................................................................................................CCCAAGCTGGGGAGGGC................................................................................................................................ 1711.001.00---------------------------------------1.00--------------------------
......................................................GTGGGACCCGGCGGGGCCCG................................................................................................................................................................................ 201.000.00--------1.00---------------------------------------------------------
.......................GCGCCCGGGGGCCTCCGCCG............................................................................................................................................................................................................... 201.000.00----------------------------------1.00-------------------------------
........................................................GGGACCCGGCGGGGGCCCC............................................................................................................................................................................... 190.560.00-----------------0.11--------------------------0.11--0.11------0.11----------0.11
........................................................GGGACCCGGCGGGGGCGG................................................................................................................................................................................ 180.330.00----0.11-------------------------------------0.11-----0.11-----------------
........................................................GGGACCCGGCGGGGGCGC................................................................................................................................................................................ 180.220.00---------------------------------------------0.22--------------------
........................................................GGGACCCGGCGGGGGCG................................................................................................................................................................................. 170.220.00--------------0.11-------------------------------------------0.11-------
......................................................................TCTCCCAACCCCCCGC.................................................................................................................................................................... 1650.200.20-----------------------------------------0.20------------------------
........................................................GGGACCCGGCGGGGGCCC................................................................................................................................................................................ 180.110.00-------------------------------------------------0.11----------------
........................................................GGGACCCGGCGGGGGTCGG............................................................................................................................................................................... 190.110.00------------------0.11-----------------------------------------------
...........................................................CCGCCCCCGCCGGGT................................................................................................................................................................................ 1590.110.11----------------------------------------------0.11-------------------
........................................................CCCCCGCCGGGTCCC................................................................................................................................................................................... 1590.110.11--0.11---------------------------------------------------------------
........................................................GGGACCCGGCGGGGGGTC................................................................................................................................................................................ 180.110.00-------------------------------------------------------------0.11----
........................................................GGGACCCGGCGGGGGCCCG............................................................................................................................................................................... 190.110.00-------------------------------------------------------0.11----------
........................................................GGGACCCGGCGGGGGCGAC............................................................................................................................................................................... 190.110.00-----------------------------------------0.11------------------------
........................................................GGGACCCGGCGGGGGTGGG............................................................................................................................................................................... 190.110.00---------------------------------------------------------0.11--------