ID: uc002wdw.1_intron_8_0_chr20_479950_r.3p
GENE: CSNK2A1(5)
chr20:479900-480149-


(5)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(5)
SKIN

Sense strand
TCTTCTGTTTGAAATCCATCCCAAAAATGACCTAAGTGCGGTGATGATCAGAGCGGGGAGGGCTTGTAGCAATAGAGGGTTTCTTACTACTGAGGCGAGGACTGCCAAATTTCACCACGCAGCATCCGCAAACATTGTCCCCATTAAAGCTGTCAGGGCTATTGCTAATGTGTGTTTTTGTTTTTGTTCTTTTCCCCTAGTCACGAACCCCCGCCTTGGTTTTTGAACACGTAAACAACACAGACTTCAA
......................................................(((((((.(((((..((.((((((....))).))).))..)))))......((((...((..(((((.(((..((((.....((((..((.......))..))))..))))..))))))))...))..))))....))))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.................................................................................................................................................................................TTGTTTTTGTTCTTTTGGGG.....................................................204.000.001.002.00-------1.00-------------
...............................................................................................................................................................................TTTTGTTTTTGTTCTTTTGGT......................................................212.000.002.00----------------------
...............................................................................................................................................................................TTTTGTTTTTGTTCTTTGCT.......................................................202.000.00-2.00---------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTTTTAATT.....................................................242.000.002.00----------------------
...........................................ATGATCAGAGCGGGGAGGGCTTGC.......................................................................................................................................................................................242.000.002.00----------------------
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTTGGGG.....................................................232.000.001.001.00---------------------
.CTTCTGTTTGAAATCTG........................................................................................................................................................................................................................................172.000.00---2.00-------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTTTAATT.....................................................252.000.001.001.00---------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTGG.........................................................212.000.00-2.00---------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTGTTG........................................................222.000.002.00----------------------
...............................................................................................................................................................................TTTTGTTTTTGTTCTTTTGGGG.....................................................222.000.002.00----------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTCTC........................................................222.000.00-2.00---------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTTGGGG......................................................241.000.001.00----------------------
..................................................GAGCGGGGAGGGCTTTTC......................................................................................................................................................................................181.000.00-----1.00-----------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTGGAG........................................................221.000.001.00----------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTTTTAAAG.....................................................241.000.00-1.00---------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTAGG........................................................221.000.001.00----------------------
...................................................AGCGGGGAGGGCTTGTAGCAATAGAGGGTCTC.......................................................................................................................................................................321.000.001.00----------------------
.................................................AGAGCGGGGAGGGCTTGTAGCAAC.................................................................................................................................................................................2411.001.001.00----------------------
...............................................................................................................................................................................TTTTGTTTTTGTTCTTTTGGAG.....................................................221.000.001.00----------------------
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTGCT.......................................................211.000.00-1.00---------------------
...............................................................................................................................................................................TTTTGTTTTTGTTCTTTGCC.......................................................201.000.00-1.00---------------------
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTTCCC......................................................2211.001.00-1.00---------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTTTGAGG.....................................................251.000.00-1.00---------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTGGTG........................................................211.000.00-1.00---------------------
.................................................AGAGCGGGGAGGGCTTGTAGCAA..................................................................................................................................................................................2311.001.00-1.00---------------------
........................................................................................................................................................................TGTGTGTTTTTGTTTTTGTTCTTTTCCCC.....................................................2911.001.001.00----------------------
.................................................AGAGCGGGGAGGGCTTGTAGC....................................................................................................................................................................................2111.001.001.00----------------------
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTTCGGTA....................................................241.000.001.00----------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTTGGT.......................................................231.000.001.00----------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTTTCCTT......................................................231.000.00-1.00---------------------
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTTTAAC.....................................................231.000.001.00----------------------
.................................................................................................................................................................................TTGTTTTTGTTCTTTTCAAT.....................................................201.000.00-1.00---------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTTTTGCA......................................................231.000.00-1.00---------------------
.............................................................................................................................................................................GTTTTTGTTTTTGTTCTCG..........................................................191.000.001.00----------------------
................................................................................................................................................................................................................CCCCGCCTTGGTTTTCG.........................171.000.00-----------1.00-----------
.............................................................................................................................................................................................................AACCCCCGCCTTGGTTTTTG.........................2021.001.00----1.00------------------
................................................................................................................................................................................................TCCCCTAGTCACGAACCCCCGCCTTGGTTGAAC.........................331.000.001.00----------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTCCC........................................................221.000.001.00----------------------
.................................................AGAGCGGGGAGGGCTTGTAGCAACAG...............................................................................................................................................................................2611.001.001.00----------------------
..............................................ATCAGAGCGGGGAGGGAAG.........................................................................................................................................................................................191.000.001.00----------------------
..............................................ATCAGAGCGGGGAGGGCTTGTAGCAAAAG...............................................................................................................................................................................291.000.001.00----------------------
............................................................................................................................................................................TGTTTTTGTTTTTGTTCTTTTCCTGGG...................................................271.000.001.00----------------------
........................................................................................................................................................................TGTGTGTTTTTGTTTTTGTTCTCTGG........................................................261.000.00-1.00---------------------
.....................................................................................................................................................................................................................CCTTGGTTTTTGAACTCTG..................191.000.00--------------1.00--------
.......................................................................................................................................................................................................................TTGGTTTTTGAACACGTAAACAACACAGACT....3121.001.00-------------0.50---0.50-----
..............................................................................................................................................................................TTTTTGTTTTTGTTCTTTTCGTCT....................................................241.000.001.00----------------------
..............................................ATCAGAGCGGGGAGGGCTTGTAGC....................................................................................................................................................................................2411.001.00-1.00---------------------
..............................................ATCAGAGCGGGGAGGGTAG.........................................................................................................................................................................................191.000.001.00----------------------
...............................................................................................................................................................................................................................TGAACACGTAAACAACACAGACT....2320.500.50--------------------0.50--
...............................................................................................................................................................................................................................TGAACACGTAAACAACACAGACTTCA.2620.500.50----------------------0.50
...............................................................................................................................................................................................................................TGAACACGTAAACAACACAG.......2020.500.50------------------0.50----
..............................................................................................................................................................................................................................TTGAACACGTAAACAACACAGACT....2420.500.50---------------0.50-------
............................................................................................................................................................................................................................TTTTGAACACGTAAACAACACAGACTT...2720.500.50---------------------0.50-
...............................................................................................................................................................................................................CCCCCGCCTTGGTTTTTG.........................1820.500.50----0.50------------------
............................................................................................................................................................................................................................TTTTGAACACGTAAACAACACAGAC.....2520.500.50-------------------0.50---
.............................................................................................................................................................................................................................TTTGAACACGTAAACAACACAGACTTCA.2820.500.50-------------0.50---------
...........................................................................................................................................................................................................................TTTTTGAACACGTAAACAACACAGACT....2720.500.50----------------0.50------

Antisense strand
TCTTCTGTTTGAAATCCATCCCAAAAATGACCTAAGTGCGGTGATGATCAGAGCGGGGAGGGCTTGTAGCAATAGAGGGTTTCTTACTACTGAGGCGAGGACTGCCAAATTTCACCACGCAGCATCCGCAAACATTGTCCCCATTAAAGCTGTCAGGGCTATTGCTAATGTGTGTTTTTGTTTTTGTTCTTTTCCCCTAGTCACGAACCCCCGCCTTGGTTTTTGAACACGTAAACAACACAGACTTCAA
......................................................(((((((.(((((..((.((((((....))).))).))..)))))......((((...((..(((((.(((..((((.....((((..((.......))..))))..))))..))))))))...))..))))....))))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................................................................................................................................................AACAACACAGACTTCATTT 191.000.00----------1.00------------
......................................CTCTGATCATCACCG..................................................................................................................................................................................................... 1511.001.00--1.00--------------------
...........................................................................................................................................................................................................CGAACCCCCGCCTTGAAGG............................ 191.000.00--------1.00--------------
.........................................................................................................................................................................................GTTCTTTTCCCCTAGTTCTG............................................. 201.000.00------------1.00----------
.......................................................................................................................CAGCATCCGCAAACAGTG................................................................................................................. 181.000.00-------1.00---------------
........................................................................................................................................................................................TGTTCTTTTCCCCTATTTG............................................... 191.000.00--1.00--------------------
..................................................................................................................................................................................................CCCTAGTCACGAACCCCG...................................... 181.000.00------1.00----------------